RNA–Protein interactions for RNA: ENST00000624354.3

VCL-207, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 3,307 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-207ENST00000624354 GOLGA2Q08379 1002 aa11.34□□□□□ -0.59
VCL-207ENST00000624354 DUSP27Q5VZP5 1158 aa11.34□□□□□ -0.59
VCL-207ENST00000624354 PLPPR3Q6T4P5 718 aa11.34□□□□□ -0.59
VCL-207ENST00000624354 DUOX2Q9NRD8 1548 aa11.33□□□□□ -0.6
VCL-207ENST00000624354 KDM2BQ8NHM5 1336 aa11.33□□□□□ -0.6
VCL-207ENST00000624354 PLXNC1O60486 1568 aa11.33□□□□□ -0.6
VCL-207ENST00000624354 PLEKHH1Q9ULM0 1364 aa11.32□□□□□ -0.6
VCL-207ENST00000624354 DAXXQ9UER7 740 aaPredicted RBP11.32□□□□□ -0.6
VCL-207ENST00000624354 MAGI2Q86UL8 1455 aa11.32□□□□□ -0.6
VCL-207ENST00000624354 WDR7Q9Y4E6 1490 aa11.32□□□□□ -0.6
VCL-207ENST00000624354 AMER1Q5JTC6 1135 aaPredicted RBP11.32□□□□□ -0.6
VCL-207ENST00000624354 CLASP1Q7Z460 1538 aa11.31□□□□□ -0.6
VCL-207ENST00000624354 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.31□□□□□ -0.62e-6■■■■□ 23.9
VCL-207ENST00000624354 TTC37Q6PGP7 1564 aa11.31□□□□□ -0.6
VCL-207ENST00000624354 ZNF521Q96K83 1311 aa11.31□□□□□ -0.6
VCL-207ENST00000624354 STAC3Q96MF2 364 aa11.3□□□□□ -0.6
VCL-207ENST00000624354 MYO5CQ9NQX4 1742 aa11.3□□□□□ -0.6
VCL-207ENST00000624354 FAM161AQ3B820 660 aa11.3□□□□□ -0.6
VCL-207ENST00000624354 GLIPR1L2Q4G1C9 344 aa11.3□□□□□ -0.6
VCL-207ENST00000624354 AFAP1Q8N556 730 aa11.3□□□□□ -0.6
VCL-207ENST00000624354 EFCAB2Q5VUJ9 269 aa11.29□□□□□ -0.6
VCL-207ENST00000624354 RNF17Q9BXT8 1623 aaKnown RBP11.29□□□□□ -0.6
VCL-207ENST00000624354 SLFN5Q08AF3 891 aa11.29□□□□□ -0.6
VCL-207ENST00000624354 TRHP20396 242 aaPredicted RBP11.28□□□□□ -0.6
VCL-207ENST00000624354 PIK3C2GO75747 1445 aa11.28□□□□□ -0.6
VCL-207ENST00000624354 SCAF11Q99590 1463 aaKnown RBP11.28□□□□□ -0.6
VCL-207ENST00000624354 FRAT1Q92837 279 aaPredicted RBP11.28□□□□□ -0.6
VCL-207ENST00000624354 ASXL1Q8IXJ9 1541 aa11.27□□□□□ -0.6
VCL-207ENST00000624354 FAM43AQ8N2R8 423 aa11.27□□□□□ -0.61
VCL-207ENST00000624354 NPC1L1Q9UHC9 1359 aa11.27□□□□□ -0.61
VCL-207ENST00000624354 NFKBIBQ15653 356 aa11.26□□□□□ -0.61
VCL-207ENST00000624354 EIF3AQ14152 1382 aaKnown RBP11.26□□□□□ -0.61
VCL-207ENST00000624354 PLCH2O75038 1416 aa11.26□□□□□ -0.61
VCL-207ENST00000624354 SYNMO15061 1565 aa11.26□□□□□ -0.61
VCL-207ENST00000624354 C8orf34Q49A92 452 aa11.26□□□□□ -0.61
VCL-207ENST00000624354 CCDC146Q8IYE0 955 aa11.26□□□□□ -0.61
VCL-207ENST00000624354 SCAPERQ9BY12 1400 aa11.26□□□□□ -0.61
VCL-207ENST00000624354 SLC4A3P48751 1232 aa11.25□□□□□ -0.61
VCL-207ENST00000624354 RGS3P49796 1198 aa11.25□□□□□ -0.61
VCL-207ENST00000624354 APAF1O14727 1248 aa11.25□□□□□ -0.61
VCL-207ENST00000624354 SLC24A1O60721 1099 aa11.25□□□□□ -0.61
VCL-207ENST00000624354 TRMT2AQ8IZ69 625 aaKnown RBP11.25□□□□□ -0.61
VCL-207ENST00000624354 MADDQ8WXG6 1647 aa11.25□□□□□ -0.61
VCL-207ENST00000624354 SHROOM2Q13796 1616 aa11.24□□□□□ -0.61
VCL-207ENST00000624354 ABCC2Q92887 1545 aa11.24□□□□□ -0.61
VCL-207ENST00000624354 SPAG9O60271 1321 aaKnown RBP11.24□□□□□ -0.61
VCL-207ENST00000624354 E9PSI1 815 aa11.24□□□□□ -0.61
VCL-207ENST00000624354 FAM69CQ0P6D2 419 aa11.24□□□□□ -0.61
VCL-207ENST00000624354 NKTRP30414 1462 aaKnown RBP11.24□□□□□ -0.61
VCL-207ENST00000624354 RAPGEF3O95398 923 aa11.24□□□□□ -0.61
VCL-207ENST00000624354 NGEFQ8N5V2 710 aa11.24□□□□□ -0.61
VCL-207ENST00000624354 IQGAP1P46940 1657 aa11.23□□□□□ -0.61
VCL-207ENST00000624354 TRAPPC8Q9Y2L5 1435 aa11.23□□□□□ -0.61
VCL-207ENST00000624354 TRPM2O94759 1503 aa11.22□□□□□ -0.61
VCL-207ENST00000624354 SPINK5Q9NQ38 1064 aaPredicted RBP11.22□□□□□ -0.61
VCL-207ENST00000624354 BCAR3O75815 825 aa11.22□□□□□ -0.61
VCL-207ENST00000624354 PTPRTO14522 1441 aa11.22□□□□□ -0.61
VCL-207ENST00000624354 MLECQ14165 292 aa11.21□□□□□ -0.62
VCL-207ENST00000624354 ABCC1P33527 1531 aa11.2□□□□□ -0.62
VCL-207ENST00000624354 CGNL1Q0VF96 1302 aa11.2□□□□□ -0.62
VCL-207ENST00000624354 RTEL1-TNFRSF6BF6WH68 1400 aa11.2□□□□□ -0.62
VCL-207ENST00000624354 KANK1Q14678 1352 aa11.2□□□□□ -0.62
VCL-207ENST00000624354 PDE3AQ14432 1141 aa11.19□□□□□ -0.62
VCL-207ENST00000624354 VSIG10Q8N0Z9 540 aa11.19□□□□□ -0.62
VCL-207ENST00000624354 SPHKAPQ2M3C7 1700 aa11.19□□□□□ -0.62
VCL-207ENST00000624354 CANXP27824 592 aaKnown RBP11.19□□□□□ -0.62
VCL-207ENST00000624354 CFAP70Q5T0N1 1121 aa11.18□□□□□ -0.62
VCL-207ENST00000624354 ARXQ96QS3 562 aa11.18□□□□□ -0.62
VCL-207ENST00000624354 ZMYND15Q9H091 742 aa11.18□□□□□ -0.62
VCL-207ENST00000624354 CENPJQ9HC77 1338 aaPredicted RBP11.18□□□□□ -0.62
VCL-207ENST00000624354 NINLQ9Y2I6 1382 aa11.18□□□□□ -0.62
VCL-207ENST00000624354 CLTCL1P53675 1640 aa11.17□□□□□ -0.62
VCL-207ENST00000624354 IGHDP01880 384 aa11.17□□□□□ -0.62
VCL-207ENST00000624354 CLUAP1Q96AJ1 413 aa11.17□□□□□ -0.62
VCL-207ENST00000624354 CARD14Q9BXL6 1004 aa11.17□□□□□ -0.62
VCL-207ENST00000624354 MAPK8IP3Q9UPT6 1336 aa11.17□□□□□ -0.62
VCL-207ENST00000624354 DMRT2Q9Y5R5 561 aa11.16□□□□□ -0.62
VCL-207ENST00000624354 KDM5AP29375 1690 aaKnown RBP11.16□□□□□ -0.62
VCL-207ENST00000624354 MYOM1P52179 1685 aa11.16□□□□□ -0.62
VCL-207ENST00000624354 CEP152O94986 1710 aa11.16□□□□□ -0.62
VCL-207ENST00000624354 GGT6Q6P531 493 aa11.16□□□□□ -0.62
VCL-207ENST00000624354 WWC1Q8IX03 1113 aa11.16□□□□□ -0.62
VCL-207ENST00000624354 KIF3BO15066 747 aa11.15□□□□□ -0.62
VCL-207ENST00000624354 ERVK-7P63135 1459 aa11.15□□□□□ -0.62
VCL-207ENST00000624354 RIMBP3CA6NJZ7 1639 aa11.15□□□□□ -0.62
VCL-207ENST00000624354 RIMBP3BA6NNM3 1639 aa11.15□□□□□ -0.62
VCL-207ENST00000624354 RIMBP3Q9UFD9 1639 aa11.15□□□□□ -0.62
VCL-207ENST00000624354 COG6Q9Y2V7 657 aa11.15□□□□□ -0.62
VCL-207ENST00000624354 POLR3AO14802 1390 aaPredicted RBP11.15□□□□□ -0.62
VCL-207ENST00000624354 FRAT2O75474 233 aaPredicted RBP11.15□□□□□ -0.62
VCL-207ENST00000624354 ZFYVE16Q7Z3T8 1539 aa11.15□□□□□ -0.62
VCL-207ENST00000624354 ADGRF5Q8IZF2 1346 aa11.14□□□□□ -0.63
VCL-207ENST00000624354 PANK1Q8TE04 598 aa11.14□□□□□ -0.63
VCL-207ENST00000624354 ASXL2Q76L83 1435 aa11.14□□□□□ -0.63
VCL-207ENST00000624354 DNAJC5Q9H3Z4 198 aa11.14□□□□□ -0.63
VCL-207ENST00000624354 TET3O43151 1660 aa11.14□□□□□ -0.63
VCL-207ENST00000624354 KIAA1210Q9ULL0 1709 aa11.13□□□□□ -0.63
VCL-207ENST00000624354 BECN1Q14457 450 aa11.13□□□□□ -0.63
VCL-207ENST00000624354 MYOM2P54296 1465 aa11.13□□□□□ -0.63
VCL-207ENST00000624354 AAMPQ13685 434 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms