RNA–Protein interactions for RNA: ENST00000622680.1

LINC00963-214, long intergenic non-protein coding RNA 963, humanhuman

TSL 1 (best)

Gene LINC00963, Length 781 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00963-214ENST00000622680 TMEM94Q12767 1356 aa17.13■□□□□ 0.33
LINC00963-214ENST00000622680 IQGAP3Q86VI3 1631 aa17.12■□□□□ 0.33
LINC00963-214ENST00000622680 RPRD2Q5VT52 1461 aaKnown RBP17.12■□□□□ 0.33
LINC00963-214ENST00000622680 SLC26A8Q96RN1 970 aa17.11■□□□□ 0.33
LINC00963-214ENST00000622680 RBM33Q96EV2 1170 aaKnown RBP17.1■□□□□ 0.33
LINC00963-214ENST00000622680 ZFYVE9O95405 1425 aa17.1■□□□□ 0.33
LINC00963-214ENST00000622680 ANKRD50Q9ULJ7 1429 aa17.1■□□□□ 0.33
LINC00963-214ENST00000622680 FAM50AQ14320 339 aaKnown RBP17.09■□□□□ 0.33
LINC00963-214ENST00000622680 SPHKAPQ2M3C7 1700 aa17.08■□□□□ 0.32
LINC00963-214ENST00000622680 FAM135BQ49AJ0 1406 aa17.08■□□□□ 0.32
LINC00963-214ENST00000622680 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.07■□□□□ 0.32
LINC00963-214ENST00000622680 KCNA6P17658 529 aa17.06■□□□□ 0.32
LINC00963-214ENST00000622680 COL16A1Q07092 1604 aaPredicted RBP17.06■□□□□ 0.32
LINC00963-214ENST00000622680 RIMS2Q9UQ26 1411 aa17.05■□□□□ 0.32
LINC00963-214ENST00000622680 RGS17Q9UGC6 210 aaPredicted RBP17.05■□□□□ 0.32
LINC00963-214ENST00000622680 PROSER2Q86WR7 435 aaPredicted RBP17.04■□□□□ 0.32
LINC00963-214ENST00000622680 DIP2AQ14689 1571 aa17.03■□□□□ 0.32
LINC00963-214ENST00000622680 PLEKHG1Q9ULL1 1385 aa17.02■□□□□ 0.32
LINC00963-214ENST00000622680 BCANQ96GW7 911 aa17.02■□□□□ 0.32
LINC00963-214ENST00000622680 SLC52A1Q9NWF4 448 aa17.02■□□□□ 0.32
LINC00963-214ENST00000622680 NRXN3Q9Y4C0 1643 aa17.02■□□□□ 0.31
LINC00963-214ENST00000622680 MSH6P52701 1360 aa17.01■□□□□ 0.31
LINC00963-214ENST00000622680 SHPRHQ149N8 1683 aa17.01■□□□□ 0.31
LINC00963-214ENST00000622680 XRN1Q8IZH2 1706 aaKnown RBP16.99■□□□□ 0.31
LINC00963-214ENST00000622680 KIF1BO60333 1816 aa16.99■□□□□ 0.31
LINC00963-214ENST00000622680 PPP1R15AO75807 674 aaPredicted RBP16.98■□□□□ 0.31
LINC00963-214ENST00000622680 ADAMTS13Q76LX8 1427 aa16.97■□□□□ 0.31
LINC00963-214ENST00000622680 TRPM2O94759 1503 aa16.97■□□□□ 0.31
LINC00963-214ENST00000622680 NUTM2DQ5VT03 806 aaPredicted RBP16.96■□□□□ 0.31
LINC00963-214ENST00000622680 AHDC1Q5TGY3 1603 aaPredicted RBP16.96■□□□□ 0.3
LINC00963-214ENST00000622680 CHGAP10645 457 aaKnown RBP16.95■□□□□ 0.3
LINC00963-214ENST00000622680 POTEAQ6S8J7 498 aa16.95■□□□□ 0.3
LINC00963-214ENST00000622680 NALCNQ8IZF0 1738 aa16.95■□□□□ 0.3
LINC00963-214ENST00000622680 ROCK1Q13464 1354 aa16.94■□□□□ 0.3
LINC00963-214ENST00000622680 CLTCL1P53675 1640 aa16.94■□□□□ 0.3
LINC00963-214ENST00000622680 NHSL1Q5SYE7 1610 aa16.94■□□□□ 0.3
LINC00963-214ENST00000622680 LRP6O75581 1613 aa16.93■□□□□ 0.3
LINC00963-214ENST00000622680 SLAIN2Q9P270 581 aa16.92■□□□□ 0.3
LINC00963-214ENST00000622680 SETBP1Q9Y6X0 1596 aa16.92■□□□□ 0.3
LINC00963-214ENST00000622680 JCADQ9P266 1359 aa16.9■□□□□ 0.3
LINC00963-214ENST00000622680 PTPRUQ92729 1446 aa16.9■□□□□ 0.3
LINC00963-214ENST00000622680 C14orf37Q86TY3 774 aa16.89■□□□□ 0.29
LINC00963-214ENST00000622680 NUP155O75694 1391 aa16.89■□□□□ 0.29
LINC00963-214ENST00000622680 ITGAEP38570 1179 aa16.88■□□□□ 0.29
LINC00963-214ENST00000622680 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.88■□□□□ 0.29
LINC00963-214ENST00000622680 TBX22Q9Y458 520 aa16.88■□□□□ 0.29
LINC00963-214ENST00000622680 NCOA3Q9Y6Q9 1424 aa16.87■□□□□ 0.29
LINC00963-214ENST00000622680 HDGFP51858 240 aaKnown RBP16.87■□□□□ 0.29
LINC00963-214ENST00000622680 NEXMIFQ5QGS0 1516 aa16.86■□□□□ 0.29
LINC00963-214ENST00000622680 PIK3R4Q99570 1358 aa16.86■□□□□ 0.29
LINC00963-214ENST00000622680 ASXL1Q8IXJ9 1541 aa16.86■□□□□ 0.29
LINC00963-214ENST00000622680 PPLO60437 1756 aa16.85■□□□□ 0.29
LINC00963-214ENST00000622680 PPARGC1BQ86YN6 1023 aaKnown RBP16.85■□□□□ 0.29
LINC00963-214ENST00000622680 DCCP43146 1447 aa16.81■□□□□ 0.28
LINC00963-214ENST00000622680 ATF3P18847 181 aa16.81■□□□□ 0.28
LINC00963-214ENST00000622680 AMOTL2Q9Y2J4 779 aa16.81■□□□□ 0.28
LINC00963-214ENST00000622680 CADPS2Q86UW7 1296 aa16.8■□□□□ 0.28
LINC00963-214ENST00000622680 C19orf44Q9H6X5 657 aa16.8■□□□□ 0.28
LINC00963-214ENST00000622680 MST1RQ04912 1400 aa16.79■□□□□ 0.28
LINC00963-214ENST00000622680 SPATA31A6Q5VVP1 1343 aa16.79■□□□□ 0.28
LINC00963-214ENST00000622680 METP08581 1390 aa16.78■□□□□ 0.28
LINC00963-214ENST00000622680 MEX3CQ5U5Q3 659 aaKnown RBP16.78■□□□□ 0.28
LINC00963-214ENST00000622680 BRINP3Q76B58 766 aa16.78■□□□□ 0.28
LINC00963-214ENST00000622680 LAMC1P11047 1609 aa16.78■□□□□ 0.28
LINC00963-214ENST00000622680 ZNF326Q5BKZ1 582 aaKnown RBP16.77■□□□□ 0.28
LINC00963-214ENST00000622680 ADGRL3Q9HAR2 1447 aa16.77■□□□□ 0.27
LINC00963-214ENST00000622680 IFT172Q9UG01 1749 aa16.76■□□□□ 0.27
LINC00963-214ENST00000622680 MARF1Q9Y4F3 1742 aaKnown RBP16.76■□□□□ 0.27
LINC00963-214ENST00000622680 NAIPQ13075 1403 aa16.73■□□□□ 0.27
LINC00963-214ENST00000622680 NUTM2BA6NNL0 878 aaPredicted RBP16.73■□□□□ 0.27
LINC00963-214ENST00000622680 NUTM2EB1AL46 878 aaPredicted RBP16.73■□□□□ 0.27
LINC00963-214ENST00000622680 NUTM2AQ8IVF1 878 aaPredicted RBP16.73■□□□□ 0.27
LINC00963-214ENST00000622680 TRIM52Q96A61 297 aa16.73■□□□□ 0.27
LINC00963-214ENST00000622680 SETD5Q9C0A6 1442 aa16.72■□□□□ 0.27
LINC00963-214ENST00000622680 RRBP1Q9P2E9 1410 aaKnown RBP16.72■□□□□ 0.27
LINC00963-214ENST00000622680 ZNF772Q68DY9 489 aaPredicted RBP16.7■□□□□ 0.26
LINC00963-214ENST00000622680 DDX17Q92841 729 aaKnown RBP16.7■□□□□ 0.26
LINC00963-214ENST00000622680 RGPD8O14715 1765 aaPredicted RBP16.69■□□□□ 0.26
LINC00963-214ENST00000622680 PTCH1Q13635 1447 aa16.68■□□□□ 0.26
LINC00963-214ENST00000622680 AFF2P51816 1311 aa16.68■□□□□ 0.26
LINC00963-214ENST00000622680 COL22A1Q8NFW1 1626 aaPredicted RBP16.67■□□□□ 0.26
LINC00963-214ENST00000622680 PNPLA6Q8IY17 1366 aa16.67■□□□□ 0.26
LINC00963-214ENST00000622680 KNDC1Q76NI1 1749 aa16.67■□□□□ 0.26
LINC00963-214ENST00000622680 C1orf167Q5SNV9 1468 aa16.67■□□□□ 0.26
LINC00963-214ENST00000622680 CDK12Q9NYV4 1490 aaPredicted RBP16.67■□□□□ 0.26
LINC00963-214ENST00000622680 EP400Q96L91 3159 aa16.67■□□□□ 0.26
LINC00963-214ENST00000622680 RGS12O14924 1447 aa16.65■□□□□ 0.26
LINC00963-214ENST00000622680 UPF1Q92900 1129 aaKnown RBP eCLIP16.65■□□□□ 0.262e-6■■■■□ 19.9
LINC00963-214ENST00000622680 ROBO2Q9HCK4 1378 aa16.64■□□□□ 0.26
LINC00963-214ENST00000622680 CDC42BPGQ6DT37 1551 aa16.64■□□□□ 0.25
LINC00963-214ENST00000622680 HFM1A2PYH4 1435 aa16.63■□□□□ 0.25
LINC00963-214ENST00000622680 FMN2Q9NZ56 1722 aa16.62■□□□□ 0.25
LINC00963-214ENST00000622680 RXRBP28702 533 aa16.62■□□□□ 0.25
LINC00963-214ENST00000622680 PRAG1Q86YV5 1406 aa16.62■□□□□ 0.25
LINC00963-214ENST00000622680 LRRC59Q96AG4 307 aaKnown RBP16.61■□□□□ 0.25
LINC00963-214ENST00000622680 C8orf37Q96NL8 207 aa16.61■□□□□ 0.25
LINC00963-214ENST00000622680 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.59■□□□□ 0.25
LINC00963-214ENST00000622680 BRWD3Q6RI45 1802 aa16.59■□□□□ 0.25
LINC00963-214ENST00000622680 ABCA3Q99758 1704 aa16.57■□□□□ 0.24
LINC00963-214ENST00000622680 ADAMTS2O95450 1211 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms