RNA–Protein interactions for RNA: ENST00000621870.4

GGA3-223, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best)

Gene GGA3, Length 4,034 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-223ENST00000621870 STRN4Q9NRL3 753 aa11.62□□□□□ -0.55
GGA3-223ENST00000621870 URB2Q14146 1524 aaKnown RBP11.62□□□□□ -0.55
GGA3-223ENST00000621870 NUTM2BA6NNL0 878 aaPredicted RBP11.62□□□□□ -0.55
GGA3-223ENST00000621870 NUTM2EB1AL46 878 aaPredicted RBP11.62□□□□□ -0.55
GGA3-223ENST00000621870 NUTM2AQ8IVF1 878 aaPredicted RBP11.62□□□□□ -0.55
GGA3-223ENST00000621870 SPRYD3Q8NCJ5 442 aa11.62□□□□□ -0.55
GGA3-223ENST00000621870 EFCAB5A4FU69 1503 aa11.62□□□□□ -0.55
GGA3-223ENST00000621870 PLEKHH2Q8IVE3 1493 aa11.62□□□□□ -0.55
GGA3-223ENST00000621870 GRIN2AQ12879 1464 aa11.61□□□□□ -0.55
GGA3-223ENST00000621870 PIP4K2BP78356 416 aa11.61□□□□□ -0.55
GGA3-223ENST00000621870 POGZQ7Z3K3 1410 aa11.61□□□□□ -0.55
GGA3-223ENST00000621870 MIA2Q96PC5 1412 aa11.61□□□□□ -0.55
GGA3-223ENST00000621870 PLIN1O60240 522 aa11.61□□□□□ -0.55
GGA3-223ENST00000621870 ARHGEF11O15085 1522 aa11.61□□□□□ -0.55
GGA3-223ENST00000621870 CABP1Q9NZU7 370 aa11.6□□□□□ -0.55
GGA3-223ENST00000621870 XPCQ01831 940 aaPredicted RBP11.6□□□□□ -0.55
GGA3-223ENST00000621870 NEXNQ0ZGT2 675 aa11.6□□□□□ -0.55
GGA3-223ENST00000621870 RRBP1Q9P2E9 1410 aaKnown RBP11.59□□□□□ -0.55
GGA3-223ENST00000621870 EPRSP07814 1512 aaKnown RBP11.59□□□□□ -0.55
GGA3-223ENST00000621870 RBM33Q96EV2 1170 aaKnown RBP11.59□□□□□ -0.55
GGA3-223ENST00000621870 NBPF8Q3BBV2 869 aa11.59□□□□□ -0.55
GGA3-223ENST00000621870 FBXO31Q5XUX0 539 aaPredicted RBP11.59□□□□□ -0.55
GGA3-223ENST00000621870 PLCB2Q00722 1185 aa11.58□□□□□ -0.55
GGA3-223ENST00000621870 E9PSI1 815 aa11.58□□□□□ -0.56
GGA3-223ENST00000621870 C9orf78Q9NZ63 289 aaPredicted RBP11.58□□□□□ -0.56
GGA3-223ENST00000621870 HFM1A2PYH4 1435 aa11.58□□□□□ -0.56
GGA3-223ENST00000621870 HSCBQ8IWL3 235 aa11.58□□□□□ -0.56
GGA3-223ENST00000621870 CDK19Q9BWU1 502 aa11.58□□□□□ -0.56
GGA3-223ENST00000621870 MAGI1Q96QZ7 1491 aaPredicted RBP11.58□□□□□ -0.56
GGA3-223ENST00000621870 GOLGA6L4A6NEF3 574 aa11.57□□□□□ -0.56
GGA3-223ENST00000621870 FKBP5Q13451 457 aaPredicted RBP11.57□□□□□ -0.56
GGA3-223ENST00000621870 CCDC7Q96M83 1385 aa11.57□□□□□ -0.56
GGA3-223ENST00000621870 KLHL34Q8N239 644 aa11.57□□□□□ -0.56
GGA3-223ENST00000621870 TSPYL4Q9UJ04 414 aa11.57□□□□□ -0.56
GGA3-223ENST00000621870 IQGAP2Q13576 1575 aa11.57□□□□□ -0.56
GGA3-223ENST00000621870 COG6Q9Y2V7 657 aa11.57□□□□□ -0.56
GGA3-223ENST00000621870 GPATCH3Q96I76 525 aa11.57□□□□□ -0.56
GGA3-223ENST00000621870 TOMM22Q9NS69 142 aa11.56□□□□□ -0.56
GGA3-223ENST00000621870 PRDM11Q9NQV5 511 aa11.56□□□□□ -0.56
GGA3-223ENST00000621870 ZKSCAN2Q63HK3 967 aa11.56□□□□□ -0.56
GGA3-223ENST00000621870 RBM19Q9Y4C8 960 aaKnown RBP11.56□□□□□ -0.56
GGA3-223ENST00000621870 KIAA1107Q9UPP5 1409 aa11.55□□□□□ -0.56
GGA3-223ENST00000621870 EHBP1L1Q8N3D4 1523 aa11.55□□□□□ -0.56
GGA3-223ENST00000621870 AIMP1Q12904 312 aaKnown RBP11.55□□□□□ -0.56
GGA3-223ENST00000621870 RUNDC1Q96C34 613 aa11.55□□□□□ -0.56
GGA3-223ENST00000621870 IDI1Q13907 227 aa11.54□□□□□ -0.56
GGA3-223ENST00000621870 WASHC2AQ641Q2 1341 aa11.54□□□□□ -0.56
GGA3-223ENST00000621870 PRKCSHP14314 528 aaPredicted RBP11.54□□□□□ -0.56
GGA3-223ENST00000621870 ZC3H6P61129 1189 aaKnown RBP11.54□□□□□ -0.56
GGA3-223ENST00000621870 CFAP44Q96MT7 982 aa11.54□□□□□ -0.56
GGA3-223ENST00000621870 DAPK1P53355 1430 aa11.54□□□□□ -0.56
GGA3-223ENST00000621870 MFAP1P55081 439 aaKnown RBP11.54□□□□□ -0.56
GGA3-223ENST00000621870 GNL2Q13823 731 aaKnown RBP11.54□□□□□ -0.56
GGA3-223ENST00000621870 WAPLQ7Z5K2 1190 aa11.54□□□□□ -0.56
GGA3-223ENST00000621870 TOM1L2Q6ZVM7 507 aa11.53□□□□□ -0.56
GGA3-223ENST00000621870 DDX58O95786 925 aaKnown RBP11.53□□□□□ -0.56
GGA3-223ENST00000621870 PTMAP06454 111 aaKnown RBP11.53□□□□□ -0.56
GGA3-223ENST00000621870 ADAMTS8Q9UP79 889 aa11.53□□□□□ -0.56
GGA3-223ENST00000621870 ADGRL1O94910 1474 aa11.53□□□□□ -0.56
GGA3-223ENST00000621870 PRKAR2BP31323 418 aa11.52□□□□□ -0.56
GGA3-223ENST00000621870 ERBINQ96RT1 1412 aa11.52□□□□□ -0.56
GGA3-223ENST00000621870 HECW1Q76N89 1606 aa11.52□□□□□ -0.56
GGA3-223ENST00000621870 ANKRD45Q5TZF3 282 aa11.52□□□□□ -0.57
GGA3-223ENST00000621870 DDX54Q8TDD1 881 aaKnown RBP11.52□□□□□ -0.57
GGA3-223ENST00000621870 TCP11L2Q8N4U5 519 aa11.52□□□□□ -0.57
GGA3-223ENST00000621870 TRIM44Q96DX7 344 aaPredicted RBP11.52□□□□□ -0.57
GGA3-223ENST00000621870 CCDC61Q9Y6R9 512 aa11.52□□□□□ -0.57
GGA3-223ENST00000621870 GNAI1P63096 354 aa11.51□□□□□ -0.57
GGA3-223ENST00000621870 ZNF692Q9BU19 519 aaPredicted RBP11.51□□□□□ -0.57
GGA3-223ENST00000621870 SULT6B1Q6IMI4 303 aa11.51□□□□□ -0.57
GGA3-223ENST00000621870 NOL8Q76FK4 1167 aaKnown RBP11.51□□□□□ -0.57
GGA3-223ENST00000621870 RILPL2Q969X0 211 aa11.51□□□□□ -0.57
GGA3-223ENST00000621870 FAM177BA6PVY3 158 aa11.51□□□□□ -0.57
GGA3-223ENST00000621870 FOXO3O43524 673 aa11.51□□□□□ -0.57
GGA3-223ENST00000621870 ANKRD30BQ9BXX2 1392 aa11.5□□□□□ -0.57
GGA3-223ENST00000621870 RBM42Q9BTD8 480 aaKnown RBP11.5□□□□□ -0.57
GGA3-223ENST00000621870 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.5□□□□□ -0.57
GGA3-223ENST00000621870 RTEL1-TNFRSF6BF6WH68 1400 aa11.5□□□□□ -0.57
GGA3-223ENST00000621870 TIAM1Q13009 1591 aa11.5□□□□□ -0.57
GGA3-223ENST00000621870 SLKQ9H2G2 1235 aaPredicted RBP11.5□□□□□ -0.57
GGA3-223ENST00000621870 RIC3Q7Z5B4 369 aa11.49□□□□□ -0.57
GGA3-223ENST00000621870 API5Q9BZZ5 524 aaKnown RBP11.49□□□□□ -0.57
GGA3-223ENST00000621870 CCDC141Q6ZP82 1450 aa11.49□□□□□ -0.57
GGA3-223ENST00000621870 RPGRIP1LQ68CZ1 1315 aa11.49□□□□□ -0.57
GGA3-223ENST00000621870 ERICH6BQ5W0A0 696 aa11.49□□□□□ -0.57
GGA3-223ENST00000621870 EXOC6Q8TAG9 804 aa11.49□□□□□ -0.57
GGA3-223ENST00000621870 TATP17735 454 aaPredicted RBP11.48□□□□□ -0.57
GGA3-223ENST00000621870 RRS1Q15050 365 aaKnown RBP11.48□□□□□ -0.57
GGA3-223ENST00000621870 PLEKHO1Q53GL0 409 aaPredicted RBP11.48□□□□□ -0.57
GGA3-223ENST00000621870 NUDT16Q96DE0 195 aaKnown RBP11.48□□□□□ -0.57
GGA3-223ENST00000621870 ZBED9Q6R2W3 1325 aa11.48□□□□□ -0.57
GGA3-223ENST00000621870 PPP2R1AP30153 589 aa11.48□□□□□ -0.57
GGA3-223ENST00000621870 DZIP1LQ8IYY4 767 aaKnown RBP11.48□□□□□ -0.57
GGA3-223ENST00000621870 AMOTL2Q9Y2J4 779 aa11.48□□□□□ -0.57
GGA3-223ENST00000621870 CRBNQ96SW2 442 aa11.47□□□□□ -0.57
GGA3-223ENST00000621870 NAIPQ13075 1403 aa11.47□□□□□ -0.57
GGA3-223ENST00000621870 ZNF530Q6P9A1 599 aaPredicted RBP11.47□□□□□ -0.57
GGA3-223ENST00000621870 GAS2L2Q8NHY3 880 aa11.47□□□□□ -0.57
GGA3-223ENST00000621870 NOP58Q9Y2X3 529 aaKnown RBP11.47□□□□□ -0.57
GGA3-223ENST00000621870 CLSTN1O94985 981 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms