RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 ZFYVE9O95405 1425 aa18.17■□□□□ 0.5
UPF3B-204ENST00000619445 PLEKHG1Q9ULL1 1385 aa18.17■□□□□ 0.5
UPF3B-204ENST00000619445 E9PCH4 1651 aa18.17■□□□□ 0.5
UPF3B-204ENST00000619445 TMEM131LA2VDJ0 1609 aa18.17■□□□□ 0.5
UPF3B-204ENST00000619445 NUP155O75694 1391 aa18.16■□□□□ 0.5
UPF3B-204ENST00000619445 MYO5BQ9ULV0 1848 aa18.16■□□□□ 0.5
UPF3B-204ENST00000619445 NWD1Q149M9 1564 aa18.16■□□□□ 0.5
UPF3B-204ENST00000619445 MED1Q15648 1581 aaPredicted RBP18.16■□□□□ 0.5
UPF3B-204ENST00000619445 SLC26A8Q96RN1 970 aa18.16■□□□□ 0.5
UPF3B-204ENST00000619445 RIMS2Q9UQ26 1411 aa18.15■□□□□ 0.5
UPF3B-204ENST00000619445 PROSER2Q86WR7 435 aaPredicted RBP18.15■□□□□ 0.5
UPF3B-204ENST00000619445 TMEM94Q12767 1356 aa18.14■□□□□ 0.49
UPF3B-204ENST00000619445 FAM135BQ49AJ0 1406 aa18.13■□□□□ 0.49
UPF3B-204ENST00000619445 ITGAEP38570 1179 aa18.12■□□□□ 0.49
UPF3B-204ENST00000619445 TBX22Q9Y458 520 aa18.12■□□□□ 0.49
UPF3B-204ENST00000619445 DIP2AQ14689 1571 aa18.11■□□□□ 0.49
UPF3B-204ENST00000619445 CHGAP10645 457 aaKnown RBP18.11■□□□□ 0.49
UPF3B-204ENST00000619445 CHD2O14647 1828 aaKnown RBP18.11■□□□□ 0.49
UPF3B-204ENST00000619445 MSH6P52701 1360 aa18.1■□□□□ 0.49
UPF3B-204ENST00000619445 PIK3R4Q99570 1358 aa18.1■□□□□ 0.49
UPF3B-204ENST00000619445 NCOA3Q9Y6Q9 1424 aa18.1■□□□□ 0.49
UPF3B-204ENST00000619445 PHF23Q9BUL5 403 aaPredicted RBP18.09■□□□□ 0.49
UPF3B-204ENST00000619445 RRBP1Q9P2E9 1410 aaKnown RBP18.09■□□□□ 0.49
UPF3B-204ENST00000619445 SPHKAPQ2M3C7 1700 aa18.06■□□□□ 0.48
UPF3B-204ENST00000619445 PPARGC1BQ86YN6 1023 aaKnown RBP18.04■□□□□ 0.48
UPF3B-204ENST00000619445 ROBO1Q9Y6N7 1651 aa18.03■□□□□ 0.48
UPF3B-204ENST00000619445 TRPM2O94759 1503 aa18.02■□□□□ 0.48
UPF3B-204ENST00000619445 ADAMTS13Q76LX8 1427 aa18.02■□□□□ 0.48
UPF3B-204ENST00000619445 SENP3Q9H4L4 574 aaPredicted RBP18.01■□□□□ 0.47
UPF3B-204ENST00000619445 SLAIN2Q9P270 581 aa18.01■□□□□ 0.47
UPF3B-204ENST00000619445 NAIPQ13075 1403 aa18■□□□□ 0.47
UPF3B-204ENST00000619445 C14orf37Q86TY3 774 aa17.99■□□□□ 0.47
UPF3B-204ENST00000619445 CADPS2Q86UW7 1296 aa17.99■□□□□ 0.47
UPF3B-204ENST00000619445 C19orf44Q9H6X5 657 aa17.98■□□□□ 0.47
UPF3B-204ENST00000619445 SETBP1Q9Y6X0 1596 aa17.98■□□□□ 0.47
UPF3B-204ENST00000619445 HFM1A2PYH4 1435 aa17.97■□□□□ 0.47
UPF3B-204ENST00000619445 ZNF326Q5BKZ1 582 aaKnown RBP17.97■□□□□ 0.47
UPF3B-204ENST00000619445 RBM33Q96EV2 1170 aaKnown RBP17.97■□□□□ 0.47
UPF3B-204ENST00000619445 KIF1BO60333 1816 aa17.96■□□□□ 0.47
UPF3B-204ENST00000619445 NUTM2DQ5VT03 806 aaPredicted RBP17.96■□□□□ 0.47
UPF3B-204ENST00000619445 ATF3P18847 181 aa17.95■□□□□ 0.46
UPF3B-204ENST00000619445 AMOTL2Q9Y2J4 779 aa17.94■□□□□ 0.46
UPF3B-204ENST00000619445 DCCP43146 1447 aa17.94■□□□□ 0.46
UPF3B-204ENST00000619445 PHLPP1O60346 1717 aa17.94■□□□□ 0.46
UPF3B-204ENST00000619445 CLTCL1P53675 1640 aa17.93■□□□□ 0.46
UPF3B-204ENST00000619445 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.92■□□□□ 0.46
UPF3B-204ENST00000619445 JCADQ9P266 1359 aa17.92■□□□□ 0.46
UPF3B-204ENST00000619445 TRIM52Q96A61 297 aa17.91■□□□□ 0.46
UPF3B-204ENST00000619445 NRXN3Q9Y4C0 1643 aa17.91■□□□□ 0.46
UPF3B-204ENST00000619445 XRN1Q8IZH2 1706 aaKnown RBP17.91■□□□□ 0.46
UPF3B-204ENST00000619445 ACIN1Q9UKV3 1341 aaKnown RBP17.91■□□□□ 0.46
UPF3B-204ENST00000619445 NEXMIFQ5QGS0 1516 aa17.9■□□□□ 0.46
UPF3B-204ENST00000619445 RPGRIP1LQ68CZ1 1315 aa17.89■□□□□ 0.45
UPF3B-204ENST00000619445 PTPRUQ92729 1446 aa17.89■□□□□ 0.45
UPF3B-204ENST00000619445 VGFO15240 615 aaPredicted RBP17.89■□□□□ 0.45
UPF3B-204ENST00000619445 SLC4A1APQ9BWU0 796 aaKnown RBP17.89■□□□□ 0.45
UPF3B-204ENST00000619445 AHDC1Q5TGY3 1603 aaPredicted RBP17.87■□□□□ 0.45
UPF3B-204ENST00000619445 COL16A1Q07092 1604 aaPredicted RBP17.86■□□□□ 0.45
UPF3B-204ENST00000619445 SPATA31A6Q5VVP1 1343 aa17.85■□□□□ 0.45
UPF3B-204ENST00000619445 METP08581 1390 aa17.84■□□□□ 0.45
UPF3B-204ENST00000619445 RGS17Q9UGC6 210 aaPredicted RBP17.84■□□□□ 0.45
UPF3B-204ENST00000619445 ADGRL3Q9HAR2 1447 aa17.82■□□□□ 0.44
UPF3B-204ENST00000619445 SHPRHQ149N8 1683 aa17.82■□□□□ 0.44
UPF3B-204ENST00000619445 PTCH1Q13635 1447 aa17.81■□□□□ 0.44
UPF3B-204ENST00000619445 PRAG1Q86YV5 1406 aa17.8■□□□□ 0.44
UPF3B-204ENST00000619445 BRINP3Q76B58 766 aa17.8■□□□□ 0.44
UPF3B-204ENST00000619445 PPLO60437 1756 aa17.79■□□□□ 0.44
UPF3B-204ENST00000619445 MST1RQ04912 1400 aa17.79■□□□□ 0.44
UPF3B-204ENST00000619445 ASXL1Q8IXJ9 1541 aa17.78■□□□□ 0.44
UPF3B-204ENST00000619445 CCDC144AA2RUR9 1427 aa17.78■□□□□ 0.44
UPF3B-204ENST00000619445 SETD1AO15047 1707 aaKnown RBP17.76■□□□□ 0.43
UPF3B-204ENST00000619445 NHSL1Q5SYE7 1610 aa17.76■□□□□ 0.43
UPF3B-204ENST00000619445 MEX3CQ5U5Q3 659 aaKnown RBP17.76■□□□□ 0.43
UPF3B-204ENST00000619445 SETD5Q9C0A6 1442 aa17.75■□□□□ 0.43
UPF3B-204ENST00000619445 NALCNQ8IZF0 1738 aa17.75■□□□□ 0.43
UPF3B-204ENST00000619445 ZNF772Q68DY9 489 aaPredicted RBP17.75■□□□□ 0.43
UPF3B-204ENST00000619445 POTEAQ6S8J7 498 aa17.75■□□□□ 0.43
UPF3B-204ENST00000619445 LRRC59Q96AG4 307 aaKnown RBP17.75■□□□□ 0.43
UPF3B-204ENST00000619445 ANKRD30BQ9BXX2 1392 aa17.75■□□□□ 0.43
UPF3B-204ENST00000619445 MPHOSPH9Q99550 1183 aa17.73■□□□□ 0.43
UPF3B-204ENST00000619445 LRP6O75581 1613 aa17.71■□□□□ 0.43
UPF3B-204ENST00000619445 ROBO2Q9HCK4 1378 aa17.7■□□□□ 0.42
UPF3B-204ENST00000619445 C1orf167Q5SNV9 1468 aa17.7■□□□□ 0.42
UPF3B-204ENST00000619445 SPATA31E1Q6ZUB1 1445 aa17.7■□□□□ 0.42
UPF3B-204ENST00000619445 LAMC1P11047 1609 aa17.69■□□□□ 0.42
UPF3B-204ENST00000619445 IFT172Q9UG01 1749 aa17.68■□□□□ 0.42
UPF3B-204ENST00000619445 FOXD1Q16676 465 aa17.67■□□□□ 0.42
UPF3B-204ENST00000619445 TECPR2O15040 1411 aa17.66■□□□□ 0.42
UPF3B-204ENST00000619445 RGL3Q3MIN7 710 aa17.66■□□□□ 0.42
UPF3B-204ENST00000619445 CDC42BPGQ6DT37 1551 aa17.66■□□□□ 0.42
UPF3B-204ENST00000619445 ADGRF5Q8IZF2 1346 aa17.64■□□□□ 0.41
UPF3B-204ENST00000619445 NUTM2BA6NNL0 878 aaPredicted RBP17.64■□□□□ 0.41
UPF3B-204ENST00000619445 NUTM2EB1AL46 878 aaPredicted RBP17.64■□□□□ 0.41
UPF3B-204ENST00000619445 NUTM2AQ8IVF1 878 aaPredicted RBP17.64■□□□□ 0.41
UPF3B-204ENST00000619445 LRPPRCP42704 1394 aaKnown RBP17.64■□□□□ 0.41
UPF3B-204ENST00000619445 PNPLA6Q8IY17 1366 aa17.64■□□□□ 0.41
UPF3B-204ENST00000619445 ABCC11Q96J66 1382 aa17.64■□□□□ 0.41
UPF3B-204ENST00000619445 PIK3C2GO75747 1445 aa17.63■□□□□ 0.41
UPF3B-204ENST00000619445 KNDC1Q76NI1 1749 aa17.63■□□□□ 0.41
UPF3B-204ENST00000619445 SOS2Q07890 1332 aaPredicted RBP17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms