RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 SPATA31E1Q6ZUB1 1445 aa28.83■■■□□ 2.21
UPF3A-211ENST00000618700 ARHGAP23Q9P227 1491 aa28.82■■■□□ 2.2
UPF3A-211ENST00000618700 SLIT1O75093 1534 aa28.82■■■□□ 2.2
UPF3A-211ENST00000618700 THEMISQ8N1K5 641 aaPredicted RBP28.81■■■□□ 2.2
UPF3A-211ENST00000618700 STAG3Q9UJ98 1225 aa28.8■■■□□ 2.2
UPF3A-211ENST00000618700 TMEM2Q9UHN6 1383 aa28.78■■■□□ 2.2
UPF3A-211ENST00000618700 STRCQ7RTU9 1775 aa28.78■■■□□ 2.2
UPF3A-211ENST00000618700 CHGAP10645 457 aaKnown RBP28.77■■■□□ 2.2
UPF3A-211ENST00000618700 ZFYVE9O95405 1425 aa28.77■■■□□ 2.2
UPF3A-211ENST00000618700 CLSPNQ9HAW4 1339 aa28.75■■■□□ 2.19
UPF3A-211ENST00000618700 NEXMIFQ5QGS0 1516 aa28.74■■■□□ 2.19
UPF3A-211ENST00000618700 RIMS2Q9UQ26 1411 aa28.72■■■□□ 2.19
UPF3A-211ENST00000618700 SIN3AQ96ST3 1273 aa28.71■■■□□ 2.19
UPF3A-211ENST00000618700 POLR1AO95602 1720 aaPredicted RBP28.7■■■□□ 2.19
UPF3A-211ENST00000618700 SCAF11Q99590 1463 aaKnown RBP28.69■■■□□ 2.18
UPF3A-211ENST00000618700 IFT172Q9UG01 1749 aa28.69■■■□□ 2.18
UPF3A-211ENST00000618700 CCER1Q8TC90 406 aaPredicted RBP28.68■■■□□ 2.18
UPF3A-211ENST00000618700 PPLO60437 1756 aa28.67■■■□□ 2.18
UPF3A-211ENST00000618700 ZNF326Q5BKZ1 582 aaKnown RBP28.67■■■□□ 2.18
UPF3A-211ENST00000618700 RPGRIP1LQ68CZ1 1315 aa28.66■■■□□ 2.18
UPF3A-211ENST00000618700 LTKP29376 864 aa28.65■■■□□ 2.18
UPF3A-211ENST00000618700 RGL3Q3MIN7 710 aa28.64■■■□□ 2.18
UPF3A-211ENST00000618700 ANKLE2Q86XL3 938 aa28.64■■■□□ 2.18
UPF3A-211ENST00000618700 MED14O60244 1454 aa28.64■■■□□ 2.17
UPF3A-211ENST00000618700 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.62■■■□□ 2.17
UPF3A-211ENST00000618700 EID1Q9Y6B2 187 aa28.62■■■□□ 2.17
UPF3A-211ENST00000618700 NEUROD1Q13562 356 aa28.61■■■□□ 2.17
UPF3A-211ENST00000618700 TXNDC2Q86VQ3 553 aa28.61■■■□□ 2.17
UPF3A-211ENST00000618700 NCKAP5LQ9HCH0 1330 aa28.61■■■□□ 2.17
UPF3A-211ENST00000618700 MYOM2P54296 1465 aa28.59■■■□□ 2.17
UPF3A-211ENST00000618700 HDGFP51858 240 aaKnown RBP28.59■■■□□ 2.17
UPF3A-211ENST00000618700 PLEKHG1Q9ULL1 1385 aa28.58■■■□□ 2.17
UPF3A-211ENST00000618700 NPHP4O75161 1426 aaPredicted RBP28.57■■■□□ 2.16
UPF3A-211ENST00000618700 IQGAP1P46940 1657 aa28.57■■■□□ 2.16
UPF3A-211ENST00000618700 NUTM2DQ5VT03 806 aaPredicted RBP28.56■■■□□ 2.16
UPF3A-211ENST00000618700 NRXN1Q9ULB1 1477 aa28.55■■■□□ 2.16
UPF3A-211ENST00000618700 PPP1R15AO75807 674 aaPredicted RBP28.55■■■□□ 2.16
UPF3A-211ENST00000618700 SETBP1Q9Y6X0 1596 aa28.54■■■□□ 2.16
UPF3A-211ENST00000618700 DCAF8L1A6NGE4 600 aa28.53■■■□□ 2.16
UPF3A-211ENST00000618700 VGFO15240 615 aaPredicted RBP28.53■■■□□ 2.16
UPF3A-211ENST00000618700 NRXN3Q9Y4C0 1643 aa28.53■■■□□ 2.16
UPF3A-211ENST00000618700 L3MBTL2Q969R5 705 aa28.51■■■□□ 2.15
UPF3A-211ENST00000618700 ADGRF5Q8IZF2 1346 aa28.5■■■□□ 2.15
UPF3A-211ENST00000618700 DCAF11Q8TEB1 546 aa28.5■■■□□ 2.15
UPF3A-211ENST00000618700 STAC3Q96MF2 364 aa28.5■■■□□ 2.15
UPF3A-211ENST00000618700 PIK3C2GO75747 1445 aa28.5■■■□□ 2.15
UPF3A-211ENST00000618700 TONSLQ96HA7 1378 aa28.5■■■□□ 2.15
UPF3A-211ENST00000618700 ADAMTS13Q76LX8 1427 aa28.48■■■□□ 2.15
UPF3A-211ENST00000618700 DIP2AQ14689 1571 aa28.47■■■□□ 2.15
UPF3A-211ENST00000618700 SETD1AO15047 1707 aaKnown RBP28.43■■■□□ 2.14
UPF3A-211ENST00000618700 KDM2AQ9Y2K7 1162 aa28.43■■■□□ 2.14
UPF3A-211ENST00000618700 TIMELESSQ9UNS1 1208 aa28.42■■■□□ 2.14
UPF3A-211ENST00000618700 ALKQ9UM73 1620 aa28.42■■■□□ 2.14
UPF3A-211ENST00000618700 PRAG1Q86YV5 1406 aa28.42■■■□□ 2.14
UPF3A-211ENST00000618700 LAMC1P11047 1609 aa28.4■■■□□ 2.14
UPF3A-211ENST00000618700 SLC26A8Q96RN1 970 aa28.39■■■□□ 2.14
UPF3A-211ENST00000618700 BCANQ96GW7 911 aa28.38■■■□□ 2.13
UPF3A-211ENST00000618700 TBX22Q9Y458 520 aa28.38■■■□□ 2.13
UPF3A-211ENST00000618700 ASXL1Q8IXJ9 1541 aa28.35■■■□□ 2.13
UPF3A-211ENST00000618700 LTBP4Q8N2S1 1624 aa28.34■■■□□ 2.13
UPF3A-211ENST00000618700 KIAA1210Q9ULL0 1709 aa28.34■■■□□ 2.13
UPF3A-211ENST00000618700 C14orf93Q9H972 538 aaKnown RBP28.33■■■□□ 2.13
UPF3A-211ENST00000618700 METP08581 1390 aa28.33■■■□□ 2.13
UPF3A-211ENST00000618700 PIK3R4Q99570 1358 aa28.33■■■□□ 2.13
UPF3A-211ENST00000618700 NWD1Q149M9 1564 aa28.31■■■□□ 2.12
UPF3A-211ENST00000618700 TRPM1Q7Z4N2 1603 aa28.3■■■□□ 2.12
UPF3A-211ENST00000618700 ADGRB1O14514 1584 aa28.3■■■□□ 2.12
UPF3A-211ENST00000618700 CFAP70Q5T0N1 1121 aa28.3■■■□□ 2.12
UPF3A-211ENST00000618700 CHD2O14647 1828 aaKnown RBP28.28■■■□□ 2.12
UPF3A-211ENST00000618700 NBPF8Q3BBV2 869 aa28.28■■■□□ 2.12
UPF3A-211ENST00000618700 PTPRUQ92729 1446 aa28.27■■■□□ 2.12
UPF3A-211ENST00000618700 XRN1Q8IZH2 1706 aaKnown RBP28.26■■■□□ 2.12
UPF3A-211ENST00000618700 CERKQ8TCT0 537 aa28.26■■■□□ 2.11
UPF3A-211ENST00000618700 STRCP1A6NGW2 1772 aa28.26■■■□□ 2.11
UPF3A-211ENST00000618700 ZNF335Q9H4Z2 1342 aaPredicted RBP28.25■■■□□ 2.11
UPF3A-211ENST00000618700 RALGAPBQ86X10 1494 aa28.24■■■□□ 2.11
UPF3A-211ENST00000618700 KCNA6P17658 529 aa28.22■■■□□ 2.11
UPF3A-211ENST00000618700 ILDR1Q86SU0 546 aaPredicted RBP28.21■■■□□ 2.11
UPF3A-211ENST00000618700 NKTRP30414 1462 aaKnown RBP28.21■■■□□ 2.11
UPF3A-211ENST00000618700 TMEM132EQ6IEE7 984 aa28.2■■■□□ 2.1
UPF3A-211ENST00000618700 LRPPRCP42704 1394 aaKnown RBP28.2■■■□□ 2.1
UPF3A-211ENST00000618700 KNDC1Q76NI1 1749 aa28.2■■■□□ 2.1
UPF3A-211ENST00000618700 TECPR2O15040 1411 aa28.19■■■□□ 2.1
UPF3A-211ENST00000618700 YTHDC2Q9H6S0 1430 aaKnown RBP28.19■■■□□ 2.1
UPF3A-211ENST00000618700 FBXO41Q8TF61 875 aa28.19■■■□□ 2.1
UPF3A-211ENST00000618700 NBPF1Q3BBV0 1214 aa28.18■■■□□ 2.1
UPF3A-211ENST00000618700 GPRASP1Q5JY77 1395 aa28.18■■■□□ 2.1
UPF3A-211ENST00000618700 IQSEC2Q5JU85 1478 aa28.18■■■□□ 2.1
UPF3A-211ENST00000618700 CPS1P31327 1500 aa28.18■■■□□ 2.1
UPF3A-211ENST00000618700 PTCH1Q13635 1447 aa28.17■■■□□ 2.1
UPF3A-211ENST00000618700 AMOTL2Q9Y2J4 779 aa28.16■■■□□ 2.1
UPF3A-211ENST00000618700 ROCK2O75116 1388 aaKnown RBP28.15■■■□□ 2.1
UPF3A-211ENST00000618700 ABCC11Q96J66 1382 aa28.15■■■□□ 2.1
UPF3A-211ENST00000618700 DLC1Q96QB1 1528 aa28.13■■■□□ 2.09
UPF3A-211ENST00000618700 LRRC7Q96NW7 1537 aa28.11■■■□□ 2.09
UPF3A-211ENST00000618700 ROBO2Q9HCK4 1378 aa28.11■■■□□ 2.09
UPF3A-211ENST00000618700 STK26Q9P289 416 aa28.09■■■□□ 2.09
UPF3A-211ENST00000618700 ARHGEF28Q8N1W1 1705 aaKnown RBP28.09■■■□□ 2.09
UPF3A-211ENST00000618700 FAM135BQ49AJ0 1406 aa28.07■■■□□ 2.08
UPF3A-211ENST00000618700 XIRP1Q702N8 1843 aaKnown RBP28.05■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms