RNA–Protein interactions for RNA: ENST00000611659.4

TPM3-223, Transcript of tropomyosin 3, human

TSL 3 BASIC

Gene TPM3, Length 3,149 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM3-223	ENST00000611659	CARMIL2	Q6F5E8	1435 aa		15.34	■□□□□ 0.05
TPM3-223	ENST00000611659	EIF4G3	O43432	1585 aa	Known RBP	15.34	■□□□□ 0.05
TPM3-223	ENST00000611659	MAGI1	Q96QZ7	1491 aa	Predicted RBP	15.34	■□□□□ 0.05
TPM3-223	ENST00000611659	EIF3A	Q14152	1382 aa	Known RBP	15.34	■□□□□ 0.05
TPM3-223	ENST00000611659	PRDM15	P57071	1507 aa	Predicted RBP	15.34	■□□□□ 0.05
TPM3-223	ENST00000611659	RRAGD	Q9NQL2	400 aa	Predicted RBP	15.33	■□□□□ 0.05
TPM3-223	ENST00000611659	DMRT2	Q9Y5R5	561 aa		15.33	■□□□□ 0.04
TPM3-223	ENST00000611659	NKTR	P30414	1462 aa	Known RBP	15.33	■□□□□ 0.04
TPM3-223	ENST00000611659	PLA2R1	Q13018	1463 aa		15.33	■□□□□ 0.04
TPM3-223	ENST00000611659	CLUAP1	Q96AJ1	413 aa		15.32	■□□□□ 0.04
TPM3-223	ENST00000611659	UPF2	Q9HAU5	1272 aa	Known RBP	15.32	■□□□□ 0.04
TPM3-223	ENST00000611659		E9PSI1	815 aa		15.32	■□□□□ 0.04
TPM3-223	ENST00000611659	GZF1	Q9H116	711 aa	Predicted RBP	15.32	■□□□□ 0.04
TPM3-223	ENST00000611659	L1TD1	Q5T7N2	865 aa	Known RBP	15.32	■□□□□ 0.04
TPM3-223	ENST00000611659	MAPK8IP3	Q9UPT6	1336 aa		15.32	■□□□□ 0.04
TPM3-223	ENST00000611659	ABCC10	Q5T3U5	1492 aa		15.31	■□□□□ 0.04
TPM3-223	ENST00000611659	NEUROD2	Q15784	382 aa		15.31	■□□□□ 0.04
TPM3-223	ENST00000611659	TRMT2A	Q8IZ69	625 aa	Known RBP	15.31	■□□□□ 0.04
TPM3-223	ENST00000611659	CGNL1	Q0VF96	1302 aa		15.31	■□□□□ 0.04
TPM3-223	ENST00000611659	CENPJ	Q9HC77	1338 aa	Predicted RBP	15.3	■□□□□ 0.04
TPM3-223	ENST00000611659	ATP10B	O94823	1461 aa		15.3	■□□□□ 0.04
TPM3-223	ENST00000611659	WDR7	Q9Y4E6	1490 aa		15.3	■□□□□ 0.04
TPM3-223	ENST00000611659	CCDC141	Q6ZP82	1450 aa		15.29	■□□□□ 0.04
TPM3-223	ENST00000611659	CDCA8	Q53HL2	280 aa		15.28	■□□□□ 0.04
TPM3-223	ENST00000611659	PDE3A	Q14432	1141 aa		15.27	■□□□□ 0.04
TPM3-223	ENST00000611659	SYNJ2	O15056	1496 aa		15.27	■□□□□ 0.04
TPM3-223	ENST00000611659	BCL2L13	Q9BXK5	485 aa		15.26	■□□□□ 0.03
TPM3-223	ENST00000611659	TBC1D2	Q9BYX2	928 aa		15.26	■□□□□ 0.03
TPM3-223	ENST00000611659	GOLGA6L3	A6NEY3	463 aa		15.26	■□□□□ 0.03
TPM3-223	ENST00000611659	NAP1L5	Q96NT1	182 aa	Predicted RBP	15.26	■□□□□ 0.03
TPM3-223	ENST00000611659	ANTXR1	Q9H6X2	564 aa		15.26	■□□□□ 0.03
TPM3-223	ENST00000611659	RRP7A	Q9Y3A4	280 aa	Known RBP	15.25	■□□□□ 0.03
TPM3-223	ENST00000611659	RSPH4A	Q5TD94	716 aa		15.24	■□□□□ 0.03
TPM3-223	ENST00000611659	PANK2	Q9BZ23	570 aa		15.24	■□□□□ 0.03
TPM3-223	ENST00000611659	EIF2AK4	Q9P2K8	1649 aa	Known RBP	15.24	■□□□□ 0.03
TPM3-223	ENST00000611659	XRCC6	P12956	609 aa	Known RBP eCLIP	15.23	■□□□□ 0.03	9e-13	■□□□□ 8.6
TPM3-223	ENST00000611659	TNN	Q9UQP3	1299 aa		15.23	■□□□□ 0.03
TPM3-223	ENST00000611659	ASXL1	Q8IXJ9	1541 aa		15.23	■□□□□ 0.03
TPM3-223	ENST00000611659	PIK3C2G	O75747	1445 aa		15.23	■□□□□ 0.03
TPM3-223	ENST00000611659	TNNT2	P45379	298 aa	Predicted RBP	15.23	■□□□□ 0.03
TPM3-223	ENST00000611659	TBC1D32	Q96NH3	1257 aa		15.23	■□□□□ 0.03
TPM3-223	ENST00000611659	PDZRN3	Q9UPQ7	1066 aa		15.23	■□□□□ 0.03
TPM3-223	ENST00000611659	PCDHB15	Q9Y5E8	787 aa		15.23	■□□□□ 0.03
TPM3-223	ENST00000611659	NUP160	Q12769	1436 aa		15.23	■□□□□ 0.03
TPM3-223	ENST00000611659	LAMC1	P11047	1609 aa		15.23	■□□□□ 0.03
TPM3-223	ENST00000611659	ARHGEF5	Q12774	1597 aa		15.22	■□□□□ 0.03
TPM3-223	ENST00000611659	WWC1	Q8IX03	1113 aa		15.22	■□□□□ 0.03
TPM3-223	ENST00000611659	PMFBP1	Q8TBY8	1022 aa		15.22	■□□□□ 0.03
TPM3-223	ENST00000611659	PNN	Q9H307	717 aa	Known RBP	15.21	■□□□□ 0.03
TPM3-223	ENST00000611659	MYO5C	Q9NQX4	1742 aa		15.21	■□□□□ 0.03
TPM3-223	ENST00000611659	SAMD9L	Q8IVG5	1584 aa		15.2	■□□□□ 0.02
TPM3-223	ENST00000611659	RLBP1	P12271	317 aa		15.2	■□□□□ 0.02
TPM3-223	ENST00000611659	CLASP1	Q7Z460	1538 aa		15.2	■□□□□ 0.02
TPM3-223	ENST00000611659	ABCA8	O94911	1581 aa		15.2	■□□□□ 0.02
TPM3-223	ENST00000611659	MCM4	P33991	863 aa		15.2	■□□□□ 0.02
TPM3-223	ENST00000611659	NLRP1	Q9C000	1473 aa		15.2	■□□□□ 0.02
TPM3-223	ENST00000611659	SYCP2	Q9BX26	1530 aa		15.19	■□□□□ 0.02
TPM3-223	ENST00000611659	MFAP1	P55081	439 aa	Known RBP	15.19	■□□□□ 0.02
TPM3-223	ENST00000611659	RARS	P54136	660 aa	Known RBP	15.18	■□□□□ 0.02
TPM3-223	ENST00000611659	RWDD1	Q9H446	243 aa	Predicted RBP	15.17	■□□□□ 0.02
TPM3-223	ENST00000611659	NINL	Q9Y2I6	1382 aa		15.17	■□□□□ 0.02
TPM3-223	ENST00000611659	ABCC2	Q92887	1545 aa		15.17	■□□□□ 0.02
TPM3-223	ENST00000611659	TRAK2	O60296	914 aa		15.17	■□□□□ 0.02
TPM3-223	ENST00000611659	ARHGAP5	Q13017	1502 aa		15.16	■□□□□ 0.02
TPM3-223	ENST00000611659	CARD14	Q9BXL6	1004 aa		15.16	■□□□□ 0.02
TPM3-223	ENST00000611659	SCAF11	Q99590	1463 aa	Known RBP	15.15	■□□□□ 0.02
TPM3-223	ENST00000611659	SYNM	O15061	1565 aa		15.15	■□□□□ 0.02
TPM3-223	ENST00000611659	C22orf23	Q9BZE7	217 aa		15.15	■□□□□ 0.02
TPM3-223	ENST00000611659	VIRMA	Q69YN4	1812 aa	Known RBP	15.15	■□□□□ 0.02
TPM3-223	ENST00000611659	FSD2	A1L4K1	749 aa		15.14	■□□□□ 0.01
TPM3-223	ENST00000611659	GLIPR1L2	Q4G1C9	344 aa		15.14	■□□□□ 0.01
TPM3-223	ENST00000611659	NGEF	Q8N5V2	710 aa		15.14	■□□□□ 0.01
TPM3-223	ENST00000611659	CHMP5	Q9NZZ3	219 aa		15.14	■□□□□ 0.01
TPM3-223	ENST00000611659	UNC13B	O14795	1591 aa		15.14	■□□□□ 0.01
TPM3-223	ENST00000611659	TCP11L2	Q8N4U5	519 aa		15.14	■□□□□ 0.01
TPM3-223	ENST00000611659	NPC1L1	Q9UHC9	1359 aa		15.13	■□□□□ 0.01
TPM3-223	ENST00000611659	CLCN1	P35523	988 aa		15.12	■□□□□ 0.01
TPM3-223	ENST00000611659	FTSJ3	Q8IY81	847 aa	Known RBP	15.12	■□□□□ 0.01
TPM3-223	ENST00000611659	HSP90AA1	P07900	732 aa	Known RBP	15.12	■□□□□ 0.01
TPM3-223	ENST00000611659	MORC1	Q86VD1	984 aa		15.12	■□□□□ 0.01
TPM3-223	ENST00000611659	RNF17	Q9BXT8	1623 aa	Known RBP	15.12	■□□□□ 0.01
TPM3-223	ENST00000611659	CDC42BPB	Q9Y5S2	1711 aa		15.12	■□□□□ 0.01
TPM3-223	ENST00000611659	CFAP70	Q5T0N1	1121 aa		15.12	■□□□□ 0.01
TPM3-223	ENST00000611659	MYH16	Q9H6N6	1097 aa		15.11	■□□□□ 0.01
TPM3-223	ENST00000611659	IQGAP3	Q86VI3	1631 aa		15.11	■□□□□ 0.01
TPM3-223	ENST00000611659	MRE11	P49959	708 aa		15.11	■□□□□ 0.01
TPM3-223	ENST00000611659	HSP90AA2P	Q14568	343 aa	Predicted RBP	15.11	■□□□□ 0.01
TPM3-223	ENST00000611659	HSCB	Q8IWL3	235 aa		15.11	■□□□□ 0.01
TPM3-223	ENST00000611659	RUNDC1	Q96C34	613 aa		15.11	■□□□□ 0.01
TPM3-223	ENST00000611659	VSIG10	Q8N0Z9	540 aa		15.1	■□□□□ 0.01
TPM3-223	ENST00000611659	AFAP1	Q8N556	730 aa		15.1	■□□□□ 0.01
TPM3-223	ENST00000611659	GRPEL1	Q9HAV7	217 aa		15.09	■□□□□ 0.01
TPM3-223	ENST00000611659	ATP10A	O60312	1499 aa		15.09	■□□□□ 0.01
TPM3-223	ENST00000611659	PREX2	Q70Z35	1606 aa		15.09	■□□□□ 0.01
TPM3-223	ENST00000611659	AAMP	Q13685	434 aa		15.09	■□□□□ 0.01
TPM3-223	ENST00000611659	MADD	Q8WXG6	1647 aa		15.08	■□□□□ 0
TPM3-223	ENST00000611659	MVP	Q14764	893 aa	Known RBP	15.08	■□□□□ 0
TPM3-223	ENST00000611659	SENP3	Q9H4L4	574 aa	Predicted RBP	15.08	■□□□□ 0
TPM3-223	ENST00000611659	TRIM44	Q96DX7	344 aa	Predicted RBP	15.08	■□□□□ 0
TPM3-223	ENST00000611659	IQGAP1	P46940	1657 aa		15.07	■□□□□ 0

Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms