RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 CFAP65Q6ZU64 1925 aaKnown RBP9.76□□□□□ -0.85
CUX1-220ENST00000607092 NOS1P29475 1434 aa9.75□□□□□ -0.85
CUX1-220ENST00000607092 NCOA3Q9Y6Q9 1424 aa9.75□□□□□ -0.85
CUX1-220ENST00000607092 PPP1R15AO75807 674 aaPredicted RBP9.75□□□□□ -0.85
CUX1-220ENST00000607092 ADGRB3O60242 1522 aa9.75□□□□□ -0.85
CUX1-220ENST00000607092 SLC26A8Q96RN1 970 aa9.74□□□□□ -0.85
CUX1-220ENST00000607092 ADGRL2O95490 1459 aa9.73□□□□□ -0.85
CUX1-220ENST00000607092 SLAIN2Q9P270 581 aa9.73□□□□□ -0.85
CUX1-220ENST00000607092 TET3O43151 1660 aa9.73□□□□□ -0.85
CUX1-220ENST00000607092 JCADQ9P266 1359 aa9.73□□□□□ -0.85
CUX1-220ENST00000607092 PLEKHG1Q9ULL1 1385 aa9.73□□□□□ -0.85
CUX1-220ENST00000607092 NWD1Q149M9 1564 aa9.72□□□□□ -0.85
CUX1-220ENST00000607092 LOC105371045A0A1W2PR82 267 aa9.72□□□□□ -0.85
CUX1-220ENST00000607092 CHIC2Q9UKJ5 165 aa9.72□□□□□ -0.85
CUX1-220ENST00000607092 TBX22Q9Y458 520 aa9.72□□□□□ -0.85
CUX1-220ENST00000607092 PIK3R4Q99570 1358 aa9.72□□□□□ -0.85
CUX1-220ENST00000607092 ANKRD50Q9ULJ7 1429 aa9.72□□□□□ -0.85
CUX1-220ENST00000607092 CADPS2Q86UW7 1296 aa9.71□□□□□ -0.86
CUX1-220ENST00000607092 ROBO1Q9Y6N7 1651 aa9.71□□□□□ -0.86
CUX1-220ENST00000607092 XIRP1Q702N8 1843 aaKnown RBP9.7□□□□□ -0.86
CUX1-220ENST00000607092 C14orf37Q86TY3 774 aa9.7□□□□□ -0.86
CUX1-220ENST00000607092 RGS17Q9UGC6 210 aaPredicted RBP9.7□□□□□ -0.86
CUX1-220ENST00000607092 SPATA31A6Q5VVP1 1343 aa9.7□□□□□ -0.86
CUX1-220ENST00000607092 ATF3P18847 181 aa9.69□□□□□ -0.86
CUX1-220ENST00000607092 ZNF772Q68DY9 489 aaPredicted RBP9.69□□□□□ -0.86
CUX1-220ENST00000607092 C19orf44Q9H6X5 657 aa9.69□□□□□ -0.86
CUX1-220ENST00000607092 RIMS2Q9UQ26 1411 aa9.69□□□□□ -0.86
CUX1-220ENST00000607092 DIP2AQ14689 1571 aa9.68□□□□□ -0.86
CUX1-220ENST00000607092 ZFYVE9O95405 1425 aa9.68□□□□□ -0.86
CUX1-220ENST00000607092 FAM50AQ14320 339 aaKnown RBP9.68□□□□□ -0.86
CUX1-220ENST00000607092 MEX3CQ5U5Q3 659 aaKnown RBP9.67□□□□□ -0.86
CUX1-220ENST00000607092 POTEAQ6S8J7 498 aa9.67□□□□□ -0.86
CUX1-220ENST00000607092 DCCP43146 1447 aa9.65□□□□□ -0.86
CUX1-220ENST00000607092 PHLPP1O60346 1717 aa9.65□□□□□ -0.86
CUX1-220ENST00000607092 ROCK1Q13464 1354 aa9.65□□□□□ -0.86
CUX1-220ENST00000607092 GCC2Q8IWJ2 1684 aa9.65□□□□□ -0.86
CUX1-220ENST00000607092 CHGAP10645 457 aaKnown RBP9.65□□□□□ -0.86
CUX1-220ENST00000607092 CNKSR2Q8WXI2 1034 aa9.65□□□□□ -0.86
CUX1-220ENST00000607092 CHD2O14647 1828 aaKnown RBP9.65□□□□□ -0.86
CUX1-220ENST00000607092 TMEM131LA2VDJ0 1609 aa9.64□□□□□ -0.87
CUX1-220ENST00000607092 UNC13BO14795 1591 aa9.63□□□□□ -0.87
CUX1-220ENST00000607092 TRPM2O94759 1503 aa9.63□□□□□ -0.87
CUX1-220ENST00000607092 RBM33Q96EV2 1170 aaKnown RBP9.63□□□□□ -0.87
CUX1-220ENST00000607092 AHDC1Q5TGY3 1603 aaPredicted RBP9.63□□□□□ -0.87
CUX1-220ENST00000607092 COL16A1Q07092 1604 aaPredicted RBP9.61□□□□□ -0.87
CUX1-220ENST00000607092 RXRBP28702 533 aa9.61□□□□□ -0.87
CUX1-220ENST00000607092 LRRC59Q96AG4 307 aaKnown RBP9.61□□□□□ -0.87
CUX1-220ENST00000607092 AMOTL2Q9Y2J4 779 aa9.61□□□□□ -0.87
CUX1-220ENST00000607092 ADAMTS13Q76LX8 1427 aa9.61□□□□□ -0.87
CUX1-220ENST00000607092 NUP155O75694 1391 aa9.61□□□□□ -0.87
CUX1-220ENST00000607092 IQGAP3Q86VI3 1631 aa9.6□□□□□ -0.87
CUX1-220ENST00000607092 CDK12Q9NYV4 1490 aaPredicted RBP9.6□□□□□ -0.87
CUX1-220ENST00000607092 SHPRHQ149N8 1683 aa9.6□□□□□ -0.87
CUX1-220ENST00000607092 BRINP3Q76B58 766 aa9.59□□□□□ -0.87
CUX1-220ENST00000607092 ZNF326Q5BKZ1 582 aaKnown RBP9.58□□□□□ -0.88
CUX1-220ENST00000607092 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.58□□□□□ -0.88
CUX1-220ENST00000607092 SETD5Q9C0A6 1442 aa9.57□□□□□ -0.88
CUX1-220ENST00000607092 E9PCH4 1651 aa9.57□□□□□ -0.88
CUX1-220ENST00000607092 MYO5BQ9ULV0 1848 aa9.56□□□□□ -0.88
CUX1-220ENST00000607092 SETBP1Q9Y6X0 1596 aa9.56□□□□□ -0.88
CUX1-220ENST00000607092 UPF1Q92900 1129 aaKnown RBP eCLIP9.56□□□□□ -0.88
CUX1-220ENST00000607092 NGLY1Q96IV0 654 aa9.56□□□□□ -0.88
CUX1-220ENST00000607092 LRP6O75581 1613 aa9.56□□□□□ -0.88
CUX1-220ENST00000607092 MSH5O43196 834 aa9.55□□□□□ -0.88
CUX1-220ENST00000607092 RBM6P78332 1123 aaKnown RBP9.55□□□□□ -0.88
CUX1-220ENST00000607092 NUTM2DQ5VT03 806 aaPredicted RBP9.55□□□□□ -0.88
CUX1-220ENST00000607092 TRIM52Q96A61 297 aa9.55□□□□□ -0.88
CUX1-220ENST00000607092 ASXL1Q8IXJ9 1541 aa9.55□□□□□ -0.88
CUX1-220ENST00000607092 ADGRL3Q9HAR2 1447 aa9.55□□□□□ -0.88
CUX1-220ENST00000607092 NUTM2BA6NNL0 878 aaPredicted RBP9.54□□□□□ -0.88
CUX1-220ENST00000607092 NUTM2EB1AL46 878 aaPredicted RBP9.54□□□□□ -0.88
CUX1-220ENST00000607092 ZBTB22O15209 634 aa9.54□□□□□ -0.88
CUX1-220ENST00000607092 VGFO15240 615 aaPredicted RBP9.54□□□□□ -0.88
CUX1-220ENST00000607092 NUTM2AQ8IVF1 878 aaPredicted RBP9.54□□□□□ -0.88
CUX1-220ENST00000607092 MST1RQ04912 1400 aa9.54□□□□□ -0.88
CUX1-220ENST00000607092 AFF2P51816 1311 aa9.54□□□□□ -0.88
CUX1-220ENST00000607092 XRN1Q8IZH2 1706 aaKnown RBP9.53□□□□□ -0.88
CUX1-220ENST00000607092 PTPRUQ92729 1446 aa9.53□□□□□ -0.88
CUX1-220ENST00000607092 PTCH1Q13635 1447 aa9.52□□□□□ -0.89
CUX1-220ENST00000607092 RPGRIP1LQ68CZ1 1315 aa9.52□□□□□ -0.89
CUX1-220ENST00000607092 SETD1AO15047 1707 aaKnown RBP9.51□□□□□ -0.89
CUX1-220ENST00000607092 SPHKAPQ2M3C7 1700 aa9.51□□□□□ -0.89
CUX1-220ENST00000607092 MAPK8IP2Q13387 824 aaPredicted RBP9.51□□□□□ -0.89
CUX1-220ENST00000607092 C8orf37Q96NL8 207 aa9.51□□□□□ -0.89
CUX1-220ENST00000607092 QTRT2Q9H974 415 aaKnown RBP9.51□□□□□ -0.89
CUX1-220ENST00000607092 NHSL1Q5SYE7 1610 aa9.51□□□□□ -0.89
CUX1-220ENST00000607092 PNPLA6Q8IY17 1366 aa9.5□□□□□ -0.89
CUX1-220ENST00000607092 ITGAEP38570 1179 aa9.5□□□□□ -0.89
CUX1-220ENST00000607092 METP08581 1390 aa9.5□□□□□ -0.89
CUX1-220ENST00000607092 ATAD2Q6PL18 1390 aa9.5□□□□□ -0.89
CUX1-220ENST00000607092 HFM1A2PYH4 1435 aa9.49□□□□□ -0.89
CUX1-220ENST00000607092 PRAG1Q86YV5 1406 aa9.49□□□□□ -0.89
CUX1-220ENST00000607092 TRPC5Q9UL62 973 aaPredicted RBP9.49□□□□□ -0.89
CUX1-220ENST00000607092 LRPPRCP42704 1394 aaKnown RBP9.49□□□□□ -0.89
CUX1-220ENST00000607092 NRXN3Q9Y4C0 1643 aa9.49□□□□□ -0.89
CUX1-220ENST00000607092 C1orf167Q5SNV9 1468 aa9.48□□□□□ -0.89
CUX1-220ENST00000607092 CCDC125Q86Z20 511 aa9.48□□□□□ -0.89
CUX1-220ENST00000607092 SOS2Q07890 1332 aaPredicted RBP9.48□□□□□ -0.89
CUX1-220ENST00000607092 NPHP3Q7Z494 1330 aa9.48□□□□□ -0.89
CUX1-220ENST00000607092 ACIN1Q9UKV3 1341 aaKnown RBP9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms