RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 HDGFP51858 240 aaKnown RBP25.03■■□□□ 1.6
TRIM28-215ENST00000601150 FOXD1Q16676 465 aa25■■□□□ 1.59
TRIM28-215ENST00000601150 HRCP23327 699 aa24.99■■□□□ 1.59
TRIM28-215ENST00000601150 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.99■■□□□ 1.59
TRIM28-215ENST00000601150 CPS1P31327 1500 aa24.97■■□□□ 1.59
TRIM28-215ENST00000601150 PPP1R15AO75807 674 aaPredicted RBP24.97■■□□□ 1.59
TRIM28-215ENST00000601150 IQSEC2Q5JU85 1478 aa24.96■■□□□ 1.59
TRIM28-215ENST00000601150 PLEKHG1Q9ULL1 1385 aa24.96■■□□□ 1.59
TRIM28-215ENST00000601150 STRCP1A6NGW2 1772 aa24.96■■□□□ 1.59
TRIM28-215ENST00000601150 FBXO41Q8TF61 875 aa24.95■■□□□ 1.58
TRIM28-215ENST00000601150 ZNF326Q5BKZ1 582 aaKnown RBP24.94■■□□□ 1.58
TRIM28-215ENST00000601150 BCANQ96GW7 911 aa24.93■■□□□ 1.58
TRIM28-215ENST00000601150 ILDR1Q86SU0 546 aaPredicted RBP24.92■■□□□ 1.58
TRIM28-215ENST00000601150 CCDC144AA2RUR9 1427 aa24.92■■□□□ 1.58
TRIM28-215ENST00000601150 NUTM2DQ5VT03 806 aaPredicted RBP24.91■■□□□ 1.58
TRIM28-215ENST00000601150 SLC26A8Q96RN1 970 aa24.91■■□□□ 1.58
TRIM28-215ENST00000601150 NEXMIFQ5QGS0 1516 aa24.91■■□□□ 1.58
TRIM28-215ENST00000601150 SENP3Q9H4L4 574 aaPredicted RBP24.88■■□□□ 1.57
TRIM28-215ENST00000601150 DIP2AQ14689 1571 aa24.88■■□□□ 1.57
TRIM28-215ENST00000601150 PPLO60437 1756 aa24.85■■□□□ 1.57
TRIM28-215ENST00000601150 CHD2O14647 1828 aaKnown RBP24.84■■□□□ 1.57
TRIM28-215ENST00000601150 SETBP1Q9Y6X0 1596 aa24.84■■□□□ 1.57
TRIM28-215ENST00000601150 TBX22Q9Y458 520 aa24.83■■□□□ 1.57
TRIM28-215ENST00000601150 ADAMTS13Q76LX8 1427 aa24.83■■□□□ 1.57
TRIM28-215ENST00000601150 NWD1Q149M9 1564 aa24.83■■□□□ 1.57
TRIM28-215ENST00000601150 RPGRIP1LQ68CZ1 1315 aa24.83■■□□□ 1.56
TRIM28-215ENST00000601150 NRXN3Q9Y4C0 1643 aa24.83■■□□□ 1.56
TRIM28-215ENST00000601150 LRRC7Q96NW7 1537 aa24.82■■□□□ 1.56
TRIM28-215ENST00000601150 SPATA31E1Q6ZUB1 1445 aa24.81■■□□□ 1.56
TRIM28-215ENST00000601150 KCNA6P17658 529 aa24.81■■□□□ 1.56
TRIM28-215ENST00000601150 IFT172Q9UG01 1749 aa24.8■■□□□ 1.56
TRIM28-215ENST00000601150 XIRP1Q702N8 1843 aaKnown RBP24.79■■□□□ 1.56
TRIM28-215ENST00000601150 TRIM26Q12899 539 aaPredicted RBP24.79■■□□□ 1.56
TRIM28-215ENST00000601150 ANKRD30BQ9BXX2 1392 aa24.79■■□□□ 1.56
TRIM28-215ENST00000601150 VGFO15240 615 aaPredicted RBP24.78■■□□□ 1.56
TRIM28-215ENST00000601150 NKTRP30414 1462 aaKnown RBP24.77■■□□□ 1.56
TRIM28-215ENST00000601150 PIK3R4Q99570 1358 aa24.77■■□□□ 1.56
TRIM28-215ENST00000601150 RGL3Q3MIN7 710 aa24.75■■□□□ 1.55
TRIM28-215ENST00000601150 UBAP1LF5GYI3 381 aa24.74■■□□□ 1.55
TRIM28-215ENST00000601150 PROSER2Q86WR7 435 aaPredicted RBP24.71■■□□□ 1.55
TRIM28-215ENST00000601150 SETD1AO15047 1707 aaKnown RBP24.71■■□□□ 1.55
TRIM28-215ENST00000601150 TMEM94Q12767 1356 aa24.68■■□□□ 1.54
TRIM28-215ENST00000601150 ALKQ9UM73 1620 aa24.68■■□□□ 1.54
TRIM28-215ENST00000601150 XRN1Q8IZH2 1706 aaKnown RBP24.68■■□□□ 1.54
TRIM28-215ENST00000601150 TOM1O60784 492 aa24.67■■□□□ 1.54
TRIM28-215ENST00000601150 PTPRUQ92729 1446 aa24.67■■□□□ 1.54
TRIM28-215ENST00000601150 METP08581 1390 aa24.67■■□□□ 1.54
TRIM28-215ENST00000601150 ADGRF5Q8IZF2 1346 aa24.65■■□□□ 1.54
TRIM28-215ENST00000601150 AMOTL2Q9Y2J4 779 aa24.65■■□□□ 1.54
TRIM28-215ENST00000601150 MYOM2P54296 1465 aa24.63■■□□□ 1.53
TRIM28-215ENST00000601150 RBM33Q96EV2 1170 aaKnown RBP24.62■■□□□ 1.53
TRIM28-215ENST00000601150 NCOA3Q9Y6Q9 1424 aa24.61■■□□□ 1.53
TRIM28-215ENST00000601150 PIK3C2GO75747 1445 aa24.6■■□□□ 1.53
TRIM28-215ENST00000601150 NRXN1Q9ULB1 1477 aa24.58■■□□□ 1.53
TRIM28-215ENST00000601150 PIP4K2BP78356 416 aa24.58■■□□□ 1.53
TRIM28-215ENST00000601150 SCAF1Q9H7N4 1312 aaKnown RBP24.58■■□□□ 1.52
TRIM28-215ENST00000601150 LAMC1P11047 1609 aa24.57■■□□□ 1.52
TRIM28-215ENST00000601150 MSH6P52701 1360 aa24.57■■□□□ 1.52
TRIM28-215ENST00000601150 C14orf37Q86TY3 774 aa24.54■■□□□ 1.52
TRIM28-215ENST00000601150 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.54■■□□□ 1.52
TRIM28-215ENST00000601150 PRAG1Q86YV5 1406 aa24.53■■□□□ 1.52
TRIM28-215ENST00000601150 DHX57Q6P158 1386 aaKnown RBP24.53■■□□□ 1.52
TRIM28-215ENST00000601150 DCAF11Q8TEB1 546 aa24.52■■□□□ 1.52
TRIM28-215ENST00000601150 PTCH1Q13635 1447 aa24.52■■□□□ 1.52
TRIM28-215ENST00000601150 ASXL1Q8IXJ9 1541 aa24.51■■□□□ 1.51
TRIM28-215ENST00000601150 STAC3Q96MF2 364 aa24.51■■□□□ 1.51
TRIM28-215ENST00000601150 C14orf93Q9H972 538 aaKnown RBP24.5■■□□□ 1.51
TRIM28-215ENST00000601150 KDM2AQ9Y2K7 1162 aa24.5■■□□□ 1.51
TRIM28-215ENST00000601150 KNDC1Q76NI1 1749 aa24.49■■□□□ 1.51
TRIM28-215ENST00000601150 C19orf44Q9H6X5 657 aa24.49■■□□□ 1.51
TRIM28-215ENST00000601150 NALCNQ8IZF0 1738 aa24.48■■□□□ 1.51
TRIM28-215ENST00000601150 ROBO2Q9HCK4 1378 aa24.47■■□□□ 1.51
TRIM28-215ENST00000601150 LRPPRCP42704 1394 aaKnown RBP24.46■■□□□ 1.51
TRIM28-215ENST00000601150 CFAP70Q5T0N1 1121 aa24.46■■□□□ 1.51
TRIM28-215ENST00000601150 TMEM132EQ6IEE7 984 aa24.46■■□□□ 1.51
TRIM28-215ENST00000601150 DCCP43146 1447 aa24.44■■□□□ 1.5
TRIM28-215ENST00000601150 ADGRL3Q9HAR2 1447 aa24.44■■□□□ 1.5
TRIM28-215ENST00000601150 ROBO1Q9Y6N7 1651 aa24.44■■□□□ 1.5
TRIM28-215ENST00000601150 ATF3P18847 181 aa24.44■■□□□ 1.5
TRIM28-215ENST00000601150 CADPS2Q86UW7 1296 aa24.44■■□□□ 1.5
TRIM28-215ENST00000601150 STK26Q9P289 416 aa24.44■■□□□ 1.5
TRIM28-215ENST00000601150 TECPR2O15040 1411 aa24.44■■□□□ 1.5
TRIM28-215ENST00000601150 FAM135BQ49AJ0 1406 aa24.44■■□□□ 1.5
TRIM28-215ENST00000601150 YTHDC2Q9H6S0 1430 aaKnown RBP24.44■■□□□ 1.5
TRIM28-215ENST00000601150 SLAIN2Q9P270 581 aa24.43■■□□□ 1.5
TRIM28-215ENST00000601150 ABCC11Q96J66 1382 aa24.42■■□□□ 1.5
TRIM28-215ENST00000601150 HSPA1LP34931 641 aa24.42■■□□□ 1.5
TRIM28-215ENST00000601150 SIN3AQ96ST3 1273 aa24.42■■□□□ 1.5
TRIM28-215ENST00000601150 ADGRB1O14514 1584 aa24.39■■□□□ 1.5
TRIM28-215ENST00000601150 KIAA1210Q9ULL0 1709 aa24.38■■□□□ 1.49
TRIM28-215ENST00000601150 NEUROD1Q13562 356 aa24.38■■□□□ 1.49
TRIM28-215ENST00000601150 PCGF6Q9BYE7 350 aa24.37■■□□□ 1.49
TRIM28-215ENST00000601150 SIRT1Q96EB6 747 aa24.35■■□□□ 1.49
TRIM28-215ENST00000601150 L3MBTL2Q969R5 705 aa24.34■■□□□ 1.49
TRIM28-215ENST00000601150 DLC1Q96QB1 1528 aa24.34■■□□□ 1.49
TRIM28-215ENST00000601150 MST1RQ04912 1400 aa24.34■■□□□ 1.49
TRIM28-215ENST00000601150 WAPLQ7Z5K2 1190 aa24.33■■□□□ 1.49
TRIM28-215ENST00000601150 CDC42BPGQ6DT37 1551 aa24.33■■□□□ 1.48
TRIM28-215ENST00000601150 PLEKHH1Q9ULM0 1364 aa24.31■■□□□ 1.48
TRIM28-215ENST00000601150 PHLPP1O60346 1717 aa24.31■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms