RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 BECN1Q14457 450 aa13.31□□□□□ -0.28
LIG1-220ENST00000601091 ZNF608Q9ULD9 1512 aaPredicted RBP13.31□□□□□ -0.28
LIG1-220ENST00000601091 MORC1Q86VD1 984 aa13.31□□□□□ -0.28
LIG1-220ENST00000601091 TICAM2Q86XR7 235 aa13.3□□□□□ -0.28
LIG1-220ENST00000601091 PTMAP06454 111 aaKnown RBP13.29□□□□□ -0.28
LIG1-220ENST00000601091 SAMD9Q5K651 1589 aa13.29□□□□□ -0.28
LIG1-220ENST00000601091 MS4A1P11836 297 aa13.29□□□□□ -0.28
LIG1-220ENST00000601091 CRBNQ96SW2 442 aa13.28□□□□□ -0.28
LIG1-220ENST00000601091 CCDC146Q8IYE0 955 aa13.27□□□□□ -0.28
LIG1-220ENST00000601091 SENP3Q9H4L4 574 aaPredicted RBP13.27□□□□□ -0.28
LIG1-220ENST00000601091 GPATCH8Q9UKJ3 1502 aaKnown RBP13.27□□□□□ -0.28
LIG1-220ENST00000601091 NUP153P49790 1475 aaKnown RBP13.27□□□□□ -0.29
LIG1-220ENST00000601091 KCNG1Q9UIX4 513 aa13.27□□□□□ -0.29
LIG1-220ENST00000601091 SOX12O15370 315 aa13.27□□□□□ -0.29
LIG1-220ENST00000601091 CDCA7LQ96GN5 454 aa13.27□□□□□ -0.29
LIG1-220ENST00000601091 MAGI1Q96QZ7 1491 aaPredicted RBP13.26□□□□□ -0.29
LIG1-220ENST00000601091 ABCA5Q8WWZ7 1642 aa13.26□□□□□ -0.29
LIG1-220ENST00000601091 GGT6Q6P531 493 aa13.26□□□□□ -0.29
LIG1-220ENST00000601091 E9PSI1 815 aa13.25□□□□□ -0.29
LIG1-220ENST00000601091 ARHGEF11O15085 1522 aa13.25□□□□□ -0.29
LIG1-220ENST00000601091 WDR62O43379 1518 aa13.25□□□□□ -0.29
LIG1-220ENST00000601091 CENPQQ7L2Z9 268 aaPredicted RBP13.24□□□□□ -0.29
LIG1-220ENST00000601091 FAM43BQ6ZT52 329 aaPredicted RBP13.24□□□□□ -0.29
LIG1-220ENST00000601091 ADAMTS8Q9UP79 889 aa13.24□□□□□ -0.29
LIG1-220ENST00000601091 CLSTN1O94985 981 aa13.23□□□□□ -0.29
LIG1-220ENST00000601091 ARHGAP5Q13017 1502 aa13.23□□□□□ -0.29
LIG1-220ENST00000601091 MAPK8IP3Q9UPT6 1336 aa13.23□□□□□ -0.29
LIG1-220ENST00000601091 MAGI3Q5TCQ9 1506 aa13.22□□□□□ -0.29
LIG1-220ENST00000601091 APAF1O14727 1248 aa13.22□□□□□ -0.29
LIG1-220ENST00000601091 ESF1Q9H501 851 aaKnown RBP13.22□□□□□ -0.29
LIG1-220ENST00000601091 RAPGEF6Q8TEU7 1601 aa13.22□□□□□ -0.29
LIG1-220ENST00000601091 U2SURPO15042 1029 aaKnown RBP13.22□□□□□ -0.29
LIG1-220ENST00000601091 ADAMTS12P58397 1594 aa13.21□□□□□ -0.29
LIG1-220ENST00000601091 CWC22Q9HCG8 908 aaKnown RBP13.21□□□□□ -0.3
LIG1-220ENST00000601091 POGKQ9P215 609 aa13.21□□□□□ -0.3
LIG1-220ENST00000601091 IRX3P78415 501 aaPredicted RBP13.2□□□□□ -0.3
LIG1-220ENST00000601091 DNTTIP2Q5QJE6 756 aaKnown RBP13.2□□□□□ -0.3
LIG1-220ENST00000601091 CCDC141Q6ZP82 1450 aa13.2□□□□□ -0.3
LIG1-220ENST00000601091 AFAP1Q8N556 730 aa13.2□□□□□ -0.3
LIG1-220ENST00000601091 NGEFQ8N5V2 710 aa13.19□□□□□ -0.3
LIG1-220ENST00000601091 CENPJQ9HC77 1338 aaPredicted RBP13.19□□□□□ -0.3
LIG1-220ENST00000601091 PPP2R1AP30153 589 aa13.19□□□□□ -0.3
LIG1-220ENST00000601091 TRAK1Q9UPV9 953 aa13.19□□□□□ -0.3
LIG1-220ENST00000601091 U2AF1L5P0DN76 240 aaPredicted RBP13.19□□□□□ -0.3
LIG1-220ENST00000601091 U2AF1Q01081 240 aaKnown RBP eCLIP13.19□□□□□ -0.3
LIG1-220ENST00000601091 ANP32BQ92688 251 aaKnown RBP13.19□□□□□ -0.3
LIG1-220ENST00000601091 ZHX1Q9UKY1 873 aaPredicted RBP13.19□□□□□ -0.3
LIG1-220ENST00000601091 PLEKHH2Q8IVE3 1493 aa13.18□□□□□ -0.3
LIG1-220ENST00000601091 KIF21AQ7Z4S6 1674 aa13.18□□□□□ -0.3
LIG1-220ENST00000601091 SRPK2P78362 688 aaKnown RBP13.18□□□□□ -0.3
LIG1-220ENST00000601091 FAM161AQ3B820 660 aa13.18□□□□□ -0.3
LIG1-220ENST00000601091 SAFB2Q14151 953 aaKnown RBP eCLIP13.18□□□□□ -0.3
LIG1-220ENST00000601091 ERBINQ96RT1 1412 aa13.18□□□□□ -0.3
LIG1-220ENST00000601091 KIAA0556O60303 1618 aa13.17□□□□□ -0.3
LIG1-220ENST00000601091 KIF14Q15058 1648 aa13.17□□□□□ -0.3
LIG1-220ENST00000601091 TEX14Q8IWB6 1497 aa13.17□□□□□ -0.3
LIG1-220ENST00000601091 AEBP1Q8IUX7 1158 aa13.17□□□□□ -0.3
LIG1-220ENST00000601091 MYH16Q9H6N6 1097 aa13.16□□□□□ -0.3
LIG1-220ENST00000601091 DNMT1P26358 1616 aaKnown RBP13.16□□□□□ -0.3
LIG1-220ENST00000601091 PZPP20742 1482 aa13.16□□□□□ -0.3
LIG1-220ENST00000601091 PNNQ9H307 717 aaKnown RBP13.16□□□□□ -0.3
LIG1-220ENST00000601091 HDAC5Q9UQL6 1122 aa13.16□□□□□ -0.3
LIG1-220ENST00000601091 DISP1Q96F81 1524 aa13.16□□□□□ -0.3
LIG1-220ENST00000601091 RALGAPBQ86X10 1494 aa13.16□□□□□ -0.3
LIG1-220ENST00000601091 DHX29Q7Z478 1369 aaKnown RBP13.16□□□□□ -0.3
LIG1-220ENST00000601091 ZNF830Q96NB3 372 aaPredicted RBP13.15□□□□□ -0.3
LIG1-220ENST00000601091 PMFBP1Q8TBY8 1022 aa13.15□□□□□ -0.3
LIG1-220ENST00000601091 RWDD1Q9H446 243 aaPredicted RBP13.15□□□□□ -0.3
LIG1-220ENST00000601091 CGNL1Q0VF96 1302 aa13.15□□□□□ -0.31
LIG1-220ENST00000601091 GCC2Q8IWJ2 1684 aa13.15□□□□□ -0.31
LIG1-220ENST00000601091 ATP10BO94823 1461 aa13.15□□□□□ -0.31
LIG1-220ENST00000601091 BACH2Q9BYV9 841 aa13.14□□□□□ -0.31
LIG1-220ENST00000601091 STK26Q9P289 416 aa13.14□□□□□ -0.31
LIG1-220ENST00000601091 SPATA31E1Q6ZUB1 1445 aa13.14□□□□□ -0.31
LIG1-220ENST00000601091 CFAP70Q5T0N1 1121 aa13.13□□□□□ -0.31
LIG1-220ENST00000601091 ITSN2Q9NZM3 1697 aa13.13□□□□□ -0.31
LIG1-220ENST00000601091 RRP7AQ9Y3A4 280 aaKnown RBP13.13□□□□□ -0.31
LIG1-220ENST00000601091 SPRYD3Q8NCJ5 442 aa13.12□□□□□ -0.31
LIG1-220ENST00000601091 CLUAP1Q96AJ1 413 aa13.12□□□□□ -0.31
LIG1-220ENST00000601091 RNF216Q9NWF9 866 aaPredicted RBP13.12□□□□□ -0.31
LIG1-220ENST00000601091 TARBP1Q13395 1621 aaKnown RBP13.11□□□□□ -0.31
LIG1-220ENST00000601091 CALD1Q05682 793 aaKnown RBP13.11□□□□□ -0.31
LIG1-220ENST00000601091 CLGNO14967 610 aa13.11□□□□□ -0.31
LIG1-220ENST00000601091 COG6Q9Y2V7 657 aa13.11□□□□□ -0.31
LIG1-220ENST00000601091 KDM6BO15054 1643 aa13.1□□□□□ -0.31
LIG1-220ENST00000601091 PBRM1Q86U86 1689 aa13.1□□□□□ -0.31
LIG1-220ENST00000601091 NFKBIBQ15653 356 aa13.09□□□□□ -0.31
LIG1-220ENST00000601091 NUTM2DQ5VT03 806 aaPredicted RBP13.09□□□□□ -0.31
LIG1-220ENST00000601091 CERS3Q8IU89 383 aa13.09□□□□□ -0.31
LIG1-220ENST00000601091 ADGRL2O95490 1459 aa13.09□□□□□ -0.31
LIG1-220ENST00000601091 IPO8O15397 1037 aaKnown RBP13.09□□□□□ -0.31
LIG1-220ENST00000601091 GSE1Q14687 1217 aa13.09□□□□□ -0.31
LIG1-220ENST00000601091 SLKQ9H2G2 1235 aaPredicted RBP13.09□□□□□ -0.31
LIG1-220ENST00000601091 MYCNP04198 464 aaPredicted RBP13.09□□□□□ -0.31
LIG1-220ENST00000601091 HDGFL2Q7Z4V5 671 aaPredicted RBP13.09□□□□□ -0.31
LIG1-220ENST00000601091 UHRF1BP1Q6BDS2 1440 aa13.08□□□□□ -0.31
LIG1-220ENST00000601091 VGFO15240 615 aaPredicted RBP13.08□□□□□ -0.31
LIG1-220ENST00000601091 TERF2IPQ9NYB0 399 aa13.08□□□□□ -0.32
LIG1-220ENST00000601091 RUNDC1Q96C34 613 aa13.07□□□□□ -0.32
LIG1-220ENST00000601091 SMC4Q9NTJ3 1288 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms