RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-205ENST00000597776 KCNA6P17658 529 aa16.21■□□□□ 0.19
LSM4-205ENST00000597776 ITGAEP38570 1179 aa16.21■□□□□ 0.19
LSM4-205ENST00000597776 BCANQ96GW7 911 aa16.21■□□□□ 0.19
LSM4-205ENST00000597776 ROCK1Q13464 1354 aa16.21■□□□□ 0.19
LSM4-205ENST00000597776 TMEM131LA2VDJ0 1609 aa16.2■□□□□ 0.18
LSM4-205ENST00000597776 E9PCH4 1651 aa16.2■□□□□ 0.18
LSM4-205ENST00000597776 NWD1Q149M9 1564 aa16.19■□□□□ 0.18
LSM4-205ENST00000597776 PROSER2Q86WR7 435 aaPredicted RBP16.19■□□□□ 0.18
LSM4-205ENST00000597776 RIMS2Q9UQ26 1411 aa16.19■□□□□ 0.18
LSM4-205ENST00000597776 IQGAP3Q86VI3 1631 aa16.18■□□□□ 0.18
LSM4-205ENST00000597776 NKTRP30414 1462 aaKnown RBP16.17■□□□□ 0.18
LSM4-205ENST00000597776 PLEKHG1Q9ULL1 1385 aa16.17■□□□□ 0.18
LSM4-205ENST00000597776 PPP1R15AO75807 674 aaPredicted RBP16.17■□□□□ 0.18
LSM4-205ENST00000597776 CHGAP10645 457 aaKnown RBP16.17■□□□□ 0.18
LSM4-205ENST00000597776 PHF23Q9BUL5 403 aaPredicted RBP16.17■□□□□ 0.18
LSM4-205ENST00000597776 NUP155O75694 1391 aa16.14■□□□□ 0.17
LSM4-205ENST00000597776 FAM135BQ49AJ0 1406 aa16.14■□□□□ 0.17
LSM4-205ENST00000597776 NUTM2DQ5VT03 806 aaPredicted RBP16.14■□□□□ 0.17
LSM4-205ENST00000597776 ROBO1Q9Y6N7 1651 aa16.13■□□□□ 0.17
LSM4-205ENST00000597776 CHD2O14647 1828 aaKnown RBP16.11■□□□□ 0.17
LSM4-205ENST00000597776 HDGFP51858 240 aaKnown RBP16.11■□□□□ 0.17
LSM4-205ENST00000597776 MSH6P52701 1360 aa16.11■□□□□ 0.17
LSM4-205ENST00000597776 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.1■□□□□ 0.17
LSM4-205ENST00000597776 ADAMTS13Q76LX8 1427 aa16.1■□□□□ 0.17
LSM4-205ENST00000597776 TBX22Q9Y458 520 aa16.09■□□□□ 0.17
LSM4-205ENST00000597776 DIP2AQ14689 1571 aa16.06■□□□□ 0.16
LSM4-205ENST00000597776 SLAIN2Q9P270 581 aa16.06■□□□□ 0.16
LSM4-205ENST00000597776 RGS17Q9UGC6 210 aaPredicted RBP16.06■□□□□ 0.16
LSM4-205ENST00000597776 SPHKAPQ2M3C7 1700 aa16.05■□□□□ 0.16
LSM4-205ENST00000597776 C14orf37Q86TY3 774 aa16.04■□□□□ 0.16
LSM4-205ENST00000597776 RRBP1Q9P2E9 1410 aaKnown RBP16.03■□□□□ 0.16
LSM4-205ENST00000597776 TRPM2O94759 1503 aa16.03■□□□□ 0.16
LSM4-205ENST00000597776 PTPRUQ92729 1446 aa16.02■□□□□ 0.16
LSM4-205ENST00000597776 PHLPP1O60346 1717 aa16.02■□□□□ 0.16
LSM4-205ENST00000597776 PIK3R4Q99570 1358 aa16.02■□□□□ 0.16
LSM4-205ENST00000597776 NRXN3Q9Y4C0 1643 aa16.01■□□□□ 0.15
LSM4-205ENST00000597776 NAIPQ13075 1403 aa16.01■□□□□ 0.15
LSM4-205ENST00000597776 NCOA3Q9Y6Q9 1424 aa16.01■□□□□ 0.15
LSM4-205ENST00000597776 SIPA1L2Q9P2F8 1722 aaPredicted RBP16■□□□□ 0.15
LSM4-205ENST00000597776 ZNF326Q5BKZ1 582 aaKnown RBP16■□□□□ 0.15
LSM4-205ENST00000597776 AMOTL2Q9Y2J4 779 aa16■□□□□ 0.15
LSM4-205ENST00000597776 CLTCL1P53675 1640 aa16■□□□□ 0.15
LSM4-205ENST00000597776 SETBP1Q9Y6X0 1596 aa16■□□□□ 0.15
LSM4-205ENST00000597776 COL16A1Q07092 1604 aaPredicted RBP15.98■□□□□ 0.15
LSM4-205ENST00000597776 C19orf44Q9H6X5 657 aa15.98■□□□□ 0.15
LSM4-205ENST00000597776 XRN1Q8IZH2 1706 aaKnown RBP15.97■□□□□ 0.15
LSM4-205ENST00000597776 ATF3P18847 181 aa15.97■□□□□ 0.15
LSM4-205ENST00000597776 POTEAQ6S8J7 498 aa15.97■□□□□ 0.15
LSM4-205ENST00000597776 CADPS2Q86UW7 1296 aa15.97■□□□□ 0.15
LSM4-205ENST00000597776 JCADQ9P266 1359 aa15.97■□□□□ 0.15
LSM4-205ENST00000597776 NEXMIFQ5QGS0 1516 aa15.96■□□□□ 0.15
LSM4-205ENST00000597776 METP08581 1390 aa15.96■□□□□ 0.15
LSM4-205ENST00000597776 AHDC1Q5TGY3 1603 aaPredicted RBP15.94■□□□□ 0.14
LSM4-205ENST00000597776 TRIM52Q96A61 297 aa15.93■□□□□ 0.14
LSM4-205ENST00000597776 HFM1A2PYH4 1435 aa15.93■□□□□ 0.14
LSM4-205ENST00000597776 BRINP3Q76B58 766 aa15.92■□□□□ 0.14
LSM4-205ENST00000597776 LRP6O75581 1613 aa15.92■□□□□ 0.14
LSM4-205ENST00000597776 DCCP43146 1447 aa15.91■□□□□ 0.14
LSM4-205ENST00000597776 KIF1BO60333 1816 aa15.91■□□□□ 0.14
LSM4-205ENST00000597776 ASXL1Q8IXJ9 1541 aa15.89■□□□□ 0.13
LSM4-205ENST00000597776 MST1RQ04912 1400 aa15.89■□□□□ 0.13
LSM4-205ENST00000597776 SLC4A1APQ9BWU0 796 aaKnown RBP15.88■□□□□ 0.13
LSM4-205ENST00000597776 SHPRHQ149N8 1683 aa15.88■□□□□ 0.13
LSM4-205ENST00000597776 SPATA31A6Q5VVP1 1343 aa15.88■□□□□ 0.13
LSM4-205ENST00000597776 NALCNQ8IZF0 1738 aa15.88■□□□□ 0.13
LSM4-205ENST00000597776 ADGRL3Q9HAR2 1447 aa15.87■□□□□ 0.13
LSM4-205ENST00000597776 MEX3CQ5U5Q3 659 aaKnown RBP15.86■□□□□ 0.13
LSM4-205ENST00000597776 SETD1AO15047 1707 aaKnown RBP15.85■□□□□ 0.13
LSM4-205ENST00000597776 FOXD1Q16676 465 aa15.85■□□□□ 0.13
LSM4-205ENST00000597776 NHSL1Q5SYE7 1610 aa15.84■□□□□ 0.13
LSM4-205ENST00000597776 VGFO15240 615 aaPredicted RBP15.84■□□□□ 0.13
LSM4-205ENST00000597776 DDX17Q92841 729 aaKnown RBP15.84■□□□□ 0.13
LSM4-205ENST00000597776 NUTM2BA6NNL0 878 aaPredicted RBP15.83■□□□□ 0.12
LSM4-205ENST00000597776 NUTM2EB1AL46 878 aaPredicted RBP15.83■□□□□ 0.12
LSM4-205ENST00000597776 NUTM2AQ8IVF1 878 aaPredicted RBP15.83■□□□□ 0.12
LSM4-205ENST00000597776 ROBO2Q9HCK4 1378 aa15.83■□□□□ 0.12
LSM4-205ENST00000597776 PTCH1Q13635 1447 aa15.82■□□□□ 0.12
LSM4-205ENST00000597776 SETD5Q9C0A6 1442 aa15.82■□□□□ 0.12
LSM4-205ENST00000597776 PPLO60437 1756 aa15.82■□□□□ 0.12
LSM4-205ENST00000597776 RPGRIP1LQ68CZ1 1315 aa15.81■□□□□ 0.12
LSM4-205ENST00000597776 C1orf167Q5SNV9 1468 aa15.79■□□□□ 0.12
LSM4-205ENST00000597776 ZNF772Q68DY9 489 aaPredicted RBP15.79■□□□□ 0.12
LSM4-205ENST00000597776 PRAG1Q86YV5 1406 aa15.78■□□□□ 0.12
LSM4-205ENST00000597776 CCDC144AA2RUR9 1427 aa15.77■□□□□ 0.12
LSM4-205ENST00000597776 LRRC59Q96AG4 307 aaKnown RBP15.77■□□□□ 0.12
LSM4-205ENST00000597776 PNPLA6Q8IY17 1366 aa15.76■□□□□ 0.11
LSM4-205ENST00000597776 ADGRF5Q8IZF2 1346 aa15.76■□□□□ 0.11
LSM4-205ENST00000597776 RGL3Q3MIN7 710 aa15.76■□□□□ 0.11
LSM4-205ENST00000597776 SPATA31E1Q6ZUB1 1445 aa15.76■□□□□ 0.11
LSM4-205ENST00000597776 AFF2P51816 1311 aa15.75■□□□□ 0.11
LSM4-205ENST00000597776 ORAI2Q96SN7 254 aa15.75■□□□□ 0.11
LSM4-205ENST00000597776 MPHOSPH9Q99550 1183 aa15.75■□□□□ 0.11
LSM4-205ENST00000597776 LAMC1P11047 1609 aa15.73■□□□□ 0.11
LSM4-205ENST00000597776 IFT172Q9UG01 1749 aa15.72■□□□□ 0.11
LSM4-205ENST00000597776 RXRBP28702 533 aa15.72■□□□□ 0.11
LSM4-205ENST00000597776 C8orf37Q96NL8 207 aa15.72■□□□□ 0.11
LSM4-205ENST00000597776 STK26Q9P289 416 aa15.72■□□□□ 0.11
LSM4-205ENST00000597776 CDC42BPGQ6DT37 1551 aa15.7■□□□□ 0.1
LSM4-205ENST00000597776 SOS2Q07890 1332 aaPredicted RBP15.7■□□□□ 0.1
LSM4-205ENST00000597776 ADAMTS2O95450 1211 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms