RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 PTPN23Q9H3S7 1636 aa15.97■□□□□ 0.15
TRIM28-210ENST00000597618 ANKRD30AQ9BXX3 1397 aa15.96■□□□□ 0.15
TRIM28-210ENST00000597618 SPATA31A6Q5VVP1 1343 aa15.94■□□□□ 0.14
TRIM28-210ENST00000597618 FGD6Q6ZV73 1430 aa15.94■□□□□ 0.14
TRIM28-210ENST00000597618 PLEKHG1Q9ULL1 1385 aa15.94■□□□□ 0.14
TRIM28-210ENST00000597618 COL16A1Q07092 1604 aaPredicted RBP15.94■□□□□ 0.14
TRIM28-210ENST00000597618 NCOA3Q9Y6Q9 1424 aa15.94■□□□□ 0.14
TRIM28-210ENST00000597618 ZNF772Q68DY9 489 aaPredicted RBP15.93■□□□□ 0.14
TRIM28-210ENST00000597618 ZFYVE9O95405 1425 aa15.93■□□□□ 0.14
TRIM28-210ENST00000597618 RPRD2Q5VT52 1461 aaKnown RBP15.92■□□□□ 0.14
TRIM28-210ENST00000597618 MEX3CQ5U5Q3 659 aaKnown RBP15.92■□□□□ 0.14
TRIM28-210ENST00000597618 LRP6O75581 1613 aa15.91■□□□□ 0.14
TRIM28-210ENST00000597618 PPP1R15AO75807 674 aaPredicted RBP15.91■□□□□ 0.14
TRIM28-210ENST00000597618 HDGFP51858 240 aaKnown RBP15.91■□□□□ 0.14
TRIM28-210ENST00000597618 CHIC2Q9UKJ5 165 aa15.9■□□□□ 0.14
TRIM28-210ENST00000597618 RIMS2Q9UQ26 1411 aa15.89■□□□□ 0.13
TRIM28-210ENST00000597618 C14orf37Q86TY3 774 aa15.89■□□□□ 0.13
TRIM28-210ENST00000597618 UPF1Q92900 1129 aaKnown RBP eCLIP15.89■□□□□ 0.13
TRIM28-210ENST00000597618 CHD2O14647 1828 aaKnown RBP15.89■□□□□ 0.13
TRIM28-210ENST00000597618 AHDC1Q5TGY3 1603 aaPredicted RBP15.88■□□□□ 0.13
TRIM28-210ENST00000597618 TBX22Q9Y458 520 aa15.88■□□□□ 0.13
TRIM28-210ENST00000597618 CADPS2Q86UW7 1296 aa15.87■□□□□ 0.13
TRIM28-210ENST00000597618 ADGRL2O95490 1459 aa15.86■□□□□ 0.13
TRIM28-210ENST00000597618 SRCAPQ6ZRS2 3230 aa15.86■□□□□ 0.13
TRIM28-210ENST00000597618 APLP2Q06481 763 aa15.86■□□□□ 0.13
TRIM28-210ENST00000597618 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.86■□□□□ 0.13
TRIM28-210ENST00000597618 TRIM52Q96A61 297 aa15.86■□□□□ 0.13
TRIM28-210ENST00000597618 SHPRHQ149N8 1683 aa15.86■□□□□ 0.13
TRIM28-210ENST00000597618 DIP2AQ14689 1571 aa15.85■□□□□ 0.13
TRIM28-210ENST00000597618 ATF3P18847 181 aa15.85■□□□□ 0.13
TRIM28-210ENST00000597618 C19orf44Q9H6X5 657 aa15.85■□□□□ 0.13
TRIM28-210ENST00000597618 PIK3R4Q99570 1358 aa15.85■□□□□ 0.13
TRIM28-210ENST00000597618 TMEM131LA2VDJ0 1609 aa15.84■□□□□ 0.13
TRIM28-210ENST00000597618 GCC2Q8IWJ2 1684 aa15.84■□□□□ 0.13
TRIM28-210ENST00000597618 RXRBP28702 533 aa15.84■□□□□ 0.13
TRIM28-210ENST00000597618 ANKRD50Q9ULJ7 1429 aa15.84■□□□□ 0.13
TRIM28-210ENST00000597618 CDK12Q9NYV4 1490 aaPredicted RBP15.84■□□□□ 0.13
TRIM28-210ENST00000597618 ADAMTS13Q76LX8 1427 aa15.83■□□□□ 0.12
TRIM28-210ENST00000597618 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.82■□□□□ 0.12
TRIM28-210ENST00000597618 LOC105371045A0A1W2PR82 267 aa15.81■□□□□ 0.12
TRIM28-210ENST00000597618 MYO5BQ9ULV0 1848 aa15.8■□□□□ 0.12
TRIM28-210ENST00000597618 CHGAP10645 457 aaKnown RBP15.8■□□□□ 0.12
TRIM28-210ENST00000597618 DCCP43146 1447 aa15.79■□□□□ 0.12
TRIM28-210ENST00000597618 BRINP3Q76B58 766 aa15.79■□□□□ 0.12
TRIM28-210ENST00000597618 TRPM2O94759 1503 aa15.78■□□□□ 0.12
TRIM28-210ENST00000597618 NUTM2BA6NNL0 878 aaPredicted RBP15.78■□□□□ 0.12
TRIM28-210ENST00000597618 NUTM2EB1AL46 878 aaPredicted RBP15.78■□□□□ 0.12
TRIM28-210ENST00000597618 NUTM2AQ8IVF1 878 aaPredicted RBP15.78■□□□□ 0.12
TRIM28-210ENST00000597618 AFF2P51816 1311 aa15.77■□□□□ 0.12
TRIM28-210ENST00000597618 ASXL1Q8IXJ9 1541 aa15.77■□□□□ 0.11
TRIM28-210ENST00000597618 NUTM2DQ5VT03 806 aaPredicted RBP15.76■□□□□ 0.11
TRIM28-210ENST00000597618 AMOTL2Q9Y2J4 779 aa15.76■□□□□ 0.11
TRIM28-210ENST00000597618 SETD5Q9C0A6 1442 aa15.76■□□□□ 0.11
TRIM28-210ENST00000597618 UNC13BO14795 1591 aa15.75■□□□□ 0.11
TRIM28-210ENST00000597618 FAM50AQ14320 339 aaKnown RBP15.74■□□□□ 0.11
TRIM28-210ENST00000597618 PTPRUQ92729 1446 aa15.74■□□□□ 0.11
TRIM28-210ENST00000597618 RGS12O14924 1447 aa15.72■□□□□ 0.11
TRIM28-210ENST00000597618 MST1RQ04912 1400 aa15.72■□□□□ 0.11
TRIM28-210ENST00000597618 LRRC59Q96AG4 307 aaKnown RBP15.72■□□□□ 0.11
TRIM28-210ENST00000597618 E9PCH4 1651 aa15.72■□□□□ 0.11
TRIM28-210ENST00000597618 RBM6P78332 1123 aaKnown RBP15.71■□□□□ 0.11
TRIM28-210ENST00000597618 NHSL1Q5SYE7 1610 aa15.71■□□□□ 0.11
TRIM28-210ENST00000597618 XRN1Q8IZH2 1706 aaKnown RBP15.7■□□□□ 0.1
TRIM28-210ENST00000597618 C8orf37Q96NL8 207 aa15.69■□□□□ 0.1
TRIM28-210ENST00000597618 SETBP1Q9Y6X0 1596 aa15.69■□□□□ 0.1
TRIM28-210ENST00000597618 IQGAP3Q86VI3 1631 aa15.68■□□□□ 0.1
TRIM28-210ENST00000597618 PNPLA6Q8IY17 1366 aa15.68■□□□□ 0.1
TRIM28-210ENST00000597618 QTRT2Q9H974 415 aaKnown RBP15.68■□□□□ 0.1
TRIM28-210ENST00000597618 NRXN3Q9Y4C0 1643 aa15.67■□□□□ 0.1
TRIM28-210ENST00000597618 ADGRL3Q9HAR2 1447 aa15.67■□□□□ 0.1
TRIM28-210ENST00000597618 ROCK1Q13464 1354 aa15.66■□□□□ 0.1
TRIM28-210ENST00000597618 ATAD2Q6PL18 1390 aa15.65■□□□□ 0.1
TRIM28-210ENST00000597618 NGLY1Q96IV0 654 aa15.65■□□□□ 0.1
TRIM28-210ENST00000597618 NUP155O75694 1391 aa15.64■□□□□ 0.09
TRIM28-210ENST00000597618 METP08581 1390 aa15.64■□□□□ 0.09
TRIM28-210ENST00000597618 FOXD1Q16676 465 aa15.63■□□□□ 0.09
TRIM28-210ENST00000597618 ADAMTS2O95450 1211 aa15.62■□□□□ 0.09
TRIM28-210ENST00000597618 ZNF326Q5BKZ1 582 aaKnown RBP15.62■□□□□ 0.09
TRIM28-210ENST00000597618 DDX17Q92841 729 aaKnown RBP15.62■□□□□ 0.09
TRIM28-210ENST00000597618 EP400Q96L91 3159 aa15.62■□□□□ 0.09
TRIM28-210ENST00000597618 C1orf167Q5SNV9 1468 aa15.6■□□□□ 0.09
TRIM28-210ENST00000597618 NALCNQ8IZF0 1738 aa15.6■□□□□ 0.09
TRIM28-210ENST00000597618 LAMC1P11047 1609 aa15.59■□□□□ 0.09
TRIM28-210ENST00000597618 PTCH1Q13635 1447 aa15.59■□□□□ 0.09
TRIM28-210ENST00000597618 USP21Q9UK80 565 aa15.58■□□□□ 0.08
TRIM28-210ENST00000597618 TRPC5Q9UL62 973 aaPredicted RBP15.58■□□□□ 0.08
TRIM28-210ENST00000597618 SPHKAPQ2M3C7 1700 aa15.57■□□□□ 0.08
TRIM28-210ENST00000597618 ZRANB1Q9UGI0 708 aa15.57■□□□□ 0.08
TRIM28-210ENST00000597618 SOS2Q07890 1332 aaPredicted RBP15.57■□□□□ 0.08
TRIM28-210ENST00000597618 FNBP4Q8N3X1 1017 aaPredicted RBP15.56■□□□□ 0.08
TRIM28-210ENST00000597618 NEXMIFQ5QGS0 1516 aa15.55■□□□□ 0.08
TRIM28-210ENST00000597618 ATRNO75882 1429 aa15.55■□□□□ 0.08
TRIM28-210ENST00000597618 PRAG1Q86YV5 1406 aa15.52■□□□□ 0.08
TRIM28-210ENST00000597618 CCDC125Q86Z20 511 aa15.52■□□□□ 0.08
TRIM28-210ENST00000597618 ORAI2Q96SN7 254 aa15.52■□□□□ 0.08
TRIM28-210ENST00000597618 COL22A1Q8NFW1 1626 aaPredicted RBP15.52■□□□□ 0.08
TRIM28-210ENST00000597618 ROBO2Q9HCK4 1378 aa15.51■□□□□ 0.07
TRIM28-210ENST00000597618 MYOM2P54296 1465 aa15.51■□□□□ 0.07
TRIM28-210ENST00000597618 CLTCL1P53675 1640 aa15.5■□□□□ 0.07
TRIM28-210ENST00000597618 ITGAEP38570 1179 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms