RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 TRPM2O94759 1503 aa26.61■■□□□ 1.85
SHKBP1-204ENST00000594862 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.61■■□□□ 1.85
SHKBP1-204ENST00000594862 TRIM52Q96A61 297 aa26.59■■□□□ 1.85
SHKBP1-204ENST00000594862 PLEKHG1Q9ULL1 1385 aa26.58■■□□□ 1.85
SHKBP1-204ENST00000594862 STRCP1A6NGW2 1772 aa26.58■■□□□ 1.85
SHKBP1-204ENST00000594862 PPP1R15AO75807 674 aaPredicted RBP26.58■■□□□ 1.85
SHKBP1-204ENST00000594862 CHGAP10645 457 aaKnown RBP26.58■■□□□ 1.85
SHKBP1-204ENST00000594862 LRRC7Q96NW7 1537 aa26.55■■□□□ 1.84
SHKBP1-204ENST00000594862 DIP2AQ14689 1571 aa26.53■■□□□ 1.84
SHKBP1-204ENST00000594862 TOM1O60784 492 aa26.52■■□□□ 1.84
SHKBP1-204ENST00000594862 BCANQ96GW7 911 aa26.52■■□□□ 1.84
SHKBP1-204ENST00000594862 SLC4A1APQ9BWU0 796 aaKnown RBP26.52■■□□□ 1.84
SHKBP1-204ENST00000594862 CLTCL1P53675 1640 aa26.51■■□□□ 1.83
SHKBP1-204ENST00000594862 NWD1Q149M9 1564 aa26.51■■□□□ 1.83
SHKBP1-204ENST00000594862 NKTRP30414 1462 aaKnown RBP26.5■■□□□ 1.83
SHKBP1-204ENST00000594862 KIF1BO60333 1816 aa26.5■■□□□ 1.83
SHKBP1-204ENST00000594862 KCNA6P17658 529 aa26.48■■□□□ 1.83
SHKBP1-204ENST00000594862 SLC26A8Q96RN1 970 aa26.48■■□□□ 1.83
SHKBP1-204ENST00000594862 SETD5Q9C0A6 1442 aa26.46■■□□□ 1.83
SHKBP1-204ENST00000594862 TBX22Q9Y458 520 aa26.44■■□□□ 1.82
SHKBP1-204ENST00000594862 PIK3R4Q99570 1358 aa26.43■■□□□ 1.82
SHKBP1-204ENST00000594862 HSPA1LP34931 641 aa26.42■■□□□ 1.82
SHKBP1-204ENST00000594862 ZNF326Q5BKZ1 582 aaKnown RBP26.42■■□□□ 1.82
SHKBP1-204ENST00000594862 CHD2O14647 1828 aaKnown RBP26.42■■□□□ 1.82
SHKBP1-204ENST00000594862 PIP4K2BP78356 416 aa26.41■■□□□ 1.82
SHKBP1-204ENST00000594862 SETBP1Q9Y6X0 1596 aa26.41■■□□□ 1.82
SHKBP1-204ENST00000594862 ADAMTS13Q76LX8 1427 aa26.4■■□□□ 1.82
SHKBP1-204ENST00000594862 XIRP1Q702N8 1843 aaKnown RBP26.4■■□□□ 1.82
SHKBP1-204ENST00000594862 NEXMIFQ5QGS0 1516 aa26.39■■□□□ 1.81
SHKBP1-204ENST00000594862 SCAF1Q9H7N4 1312 aaKnown RBP26.39■■□□□ 1.81
SHKBP1-204ENST00000594862 TMEM94Q12767 1356 aa26.37■■□□□ 1.81
SHKBP1-204ENST00000594862 MPHOSPH9Q99550 1183 aa26.37■■□□□ 1.81
SHKBP1-204ENST00000594862 ALKQ9UM73 1620 aa26.36■■□□□ 1.81
SHKBP1-204ENST00000594862 CCDC144AA2RUR9 1427 aa26.36■■□□□ 1.81
SHKBP1-204ENST00000594862 NUTM2DQ5VT03 806 aaPredicted RBP26.35■■□□□ 1.81
SHKBP1-204ENST00000594862 PROSER2Q86WR7 435 aaPredicted RBP26.35■■□□□ 1.81
SHKBP1-204ENST00000594862 RPGRIP1LQ68CZ1 1315 aa26.34■■□□□ 1.81
SHKBP1-204ENST00000594862 NRXN3Q9Y4C0 1643 aa26.33■■□□□ 1.81
SHKBP1-204ENST00000594862 RAB3GAP2Q9H2M9 1393 aa26.33■■□□□ 1.8
SHKBP1-204ENST00000594862 NCOA3Q9Y6Q9 1424 aa26.32■■□□□ 1.8
SHKBP1-204ENST00000594862 MED1Q15648 1581 aaPredicted RBP26.29■■□□□ 1.8
SHKBP1-204ENST00000594862 VGFO15240 615 aaPredicted RBP26.29■■□□□ 1.8
SHKBP1-204ENST00000594862 SENP3Q9H4L4 574 aaPredicted RBP26.29■■□□□ 1.8
SHKBP1-204ENST00000594862 MSH6P52701 1360 aa26.29■■□□□ 1.8
SHKBP1-204ENST00000594862 PPLO60437 1756 aa26.28■■□□□ 1.8
SHKBP1-204ENST00000594862 XRN1Q8IZH2 1706 aaKnown RBP26.25■■□□□ 1.79
SHKBP1-204ENST00000594862 HRCP23327 699 aa26.25■■□□□ 1.79
SHKBP1-204ENST00000594862 FOXD1Q16676 465 aa26.25■■□□□ 1.79
SHKBP1-204ENST00000594862 SPATA31E1Q6ZUB1 1445 aa26.22■■□□□ 1.79
SHKBP1-204ENST00000594862 AMOTL2Q9Y2J4 779 aa26.21■■□□□ 1.79
SHKBP1-204ENST00000594862 FAM135BQ49AJ0 1406 aa26.21■■□□□ 1.79
SHKBP1-204ENST00000594862 ANKRD30BQ9BXX2 1392 aa26.2■■□□□ 1.78
SHKBP1-204ENST00000594862 PTPRUQ92729 1446 aa26.19■■□□□ 1.78
SHKBP1-204ENST00000594862 IFT172Q9UG01 1749 aa26.19■■□□□ 1.78
SHKBP1-204ENST00000594862 C14orf37Q86TY3 774 aa26.18■■□□□ 1.78
SHKBP1-204ENST00000594862 METP08581 1390 aa26.17■■□□□ 1.78
SHKBP1-204ENST00000594862 SETD1AO15047 1707 aaKnown RBP26.17■■□□□ 1.78
SHKBP1-204ENST00000594862 RBM33Q96EV2 1170 aaKnown RBP26.16■■□□□ 1.78
SHKBP1-204ENST00000594862 DCCP43146 1447 aa26.14■■□□□ 1.78
SHKBP1-204ENST00000594862 ROBO1Q9Y6N7 1651 aa26.14■■□□□ 1.78
SHKBP1-204ENST00000594862 PRAG1Q86YV5 1406 aa26.14■■□□□ 1.77
SHKBP1-204ENST00000594862 C19orf44Q9H6X5 657 aa26.13■■□□□ 1.77
SHKBP1-204ENST00000594862 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.13■■□□□ 1.77
SHKBP1-204ENST00000594862 CADPS2Q86UW7 1296 aa26.12■■□□□ 1.77
SHKBP1-204ENST00000594862 PTCH1Q13635 1447 aa26.12■■□□□ 1.77
SHKBP1-204ENST00000594862 ATF3P18847 181 aa26.1■■□□□ 1.77
SHKBP1-204ENST00000594862 RGL3Q3MIN7 710 aa26.1■■□□□ 1.77
SHKBP1-204ENST00000594862 SLAIN2Q9P270 581 aa26.1■■□□□ 1.77
SHKBP1-204ENST00000594862 MYOM2P54296 1465 aa26.07■■□□□ 1.76
SHKBP1-204ENST00000594862 ADGRL3Q9HAR2 1447 aa26.06■■□□□ 1.76
SHKBP1-204ENST00000594862 PHF23Q9BUL5 403 aaPredicted RBP26.06■■□□□ 1.76
SHKBP1-204ENST00000594862 PIK3C2GO75747 1445 aa26.05■■□□□ 1.76
SHKBP1-204ENST00000594862 LAMC1P11047 1609 aa26.05■■□□□ 1.76
SHKBP1-204ENST00000594862 ADGRF5Q8IZF2 1346 aa26.04■■□□□ 1.76
SHKBP1-204ENST00000594862 NALCNQ8IZF0 1738 aa26.02■■□□□ 1.76
SHKBP1-204ENST00000594862 NRXN1Q9ULB1 1477 aa26.01■■□□□ 1.75
SHKBP1-204ENST00000594862 PHLPP1O60346 1717 aa25.99■■□□□ 1.75
SHKBP1-204ENST00000594862 TECPR2O15040 1411 aa25.98■■□□□ 1.75
SHKBP1-204ENST00000594862 KNDC1Q76NI1 1749 aa25.98■■□□□ 1.75
SHKBP1-204ENST00000594862 ROBO2Q9HCK4 1378 aa25.97■■□□□ 1.75
SHKBP1-204ENST00000594862 RGS17Q9UGC6 210 aaPredicted RBP25.97■■□□□ 1.75
SHKBP1-204ENST00000594862 AHDC1Q5TGY3 1603 aaPredicted RBP25.96■■□□□ 1.75
SHKBP1-204ENST00000594862 STAC3Q96MF2 364 aa25.96■■□□□ 1.75
SHKBP1-204ENST00000594862 LRPPRCP42704 1394 aaKnown RBP25.95■■□□□ 1.75
SHKBP1-204ENST00000594862 MST1RQ04912 1400 aa25.95■■□□□ 1.74
SHKBP1-204ENST00000594862 ASXL1Q8IXJ9 1541 aa25.93■■□□□ 1.74
SHKBP1-204ENST00000594862 ABCC11Q96J66 1382 aa25.92■■□□□ 1.74
SHKBP1-204ENST00000594862 COL16A1Q07092 1604 aaPredicted RBP25.92■■□□□ 1.74
SHKBP1-204ENST00000594862 C14orf93Q9H972 538 aaKnown RBP25.91■■□□□ 1.74
SHKBP1-204ENST00000594862 CDC42BPGQ6DT37 1551 aa25.9■■□□□ 1.74
SHKBP1-204ENST00000594862 YTHDC2Q9H6S0 1430 aaKnown RBP25.89■■□□□ 1.74
SHKBP1-204ENST00000594862 JCADQ9P266 1359 aa25.89■■□□□ 1.74
SHKBP1-204ENST00000594862 BRINP3Q76B58 766 aa25.88■■□□□ 1.73
SHKBP1-204ENST00000594862 DHX57Q6P158 1386 aaKnown RBP25.87■■□□□ 1.73
SHKBP1-204ENST00000594862 NHSL1Q5SYE7 1610 aa25.86■■□□□ 1.73
SHKBP1-204ENST00000594862 SIRT1Q96EB6 747 aa25.85■■□□□ 1.73
SHKBP1-204ENST00000594862 STK26Q9P289 416 aa25.84■■□□□ 1.73
SHKBP1-204ENST00000594862 C1orf167Q5SNV9 1468 aa25.84■■□□□ 1.73
SHKBP1-204ENST00000594862 TMEM132EQ6IEE7 984 aa25.83■■□□□ 1.73
SHKBP1-204ENST00000594862 DCAF11Q8TEB1 546 aa25.83■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms