RNA–Protein interactions for RNA: ENST00000593946.5

PNKP-203, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 1 (best)

Gene PNKP, Length 1,723 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-203ENST00000593946 ADAMTSL3P82987 1691 aa29.37■■■□□ 2.29
PNKP-203ENST00000593946 USP47Q96K76 1375 aa29.36■■■□□ 2.29
PNKP-203ENST00000593946 CARD11Q9BXL7 1154 aa29.35■■■□□ 2.29
PNKP-203ENST00000593946 TNRQ92752 1358 aa29.35■■■□□ 2.29
PNKP-203ENST00000593946 DIEXFQ68CQ4 756 aaKnown RBP29.34■■■□□ 2.29
PNKP-203ENST00000593946 KDM5AP29375 1690 aaKnown RBP29.34■■■□□ 2.29
PNKP-203ENST00000593946 ADGRF5Q8IZF2 1346 aa29.33■■■□□ 2.29
PNKP-203ENST00000593946 RIMS1Q86UR5 1692 aaKnown RBP29.32■■■□□ 2.28
PNKP-203ENST00000593946 NBPF1Q3BBV0 1214 aa29.32■■■□□ 2.28
PNKP-203ENST00000593946 POLR1AO95602 1720 aaPredicted RBP29.31■■■□□ 2.28
PNKP-203ENST00000593946 A2ML1A8K2U0 1454 aa29.31■■■□□ 2.28
PNKP-203ENST00000593946 PIK3C2GO75747 1445 aa29.3■■■□□ 2.28
PNKP-203ENST00000593946 ZFYVE9O95405 1425 aa29.29■■■□□ 2.28
PNKP-203ENST00000593946 IQGAP1P46940 1657 aa29.28■■■□□ 2.28
PNKP-203ENST00000593946 UBR1Q8IWV7 1749 aa29.27■■■□□ 2.28
PNKP-203ENST00000593946 CEBPAP49715 358 aaPredicted RBP29.26■■■□□ 2.27
PNKP-203ENST00000593946 NLRP1Q9C000 1473 aa29.26■■■□□ 2.27
PNKP-203ENST00000593946 VGFO15240 615 aaPredicted RBP29.24■■■□□ 2.27
PNKP-203ENST00000593946 STAG3Q9UJ98 1225 aa29.24■■■□□ 2.27
PNKP-203ENST00000593946 SETBP1Q9Y6X0 1596 aa29.23■■■□□ 2.27
PNKP-203ENST00000593946 CFAP70Q5T0N1 1121 aa29.2■■■□□ 2.26
PNKP-203ENST00000593946 MYO3AQ8NEV4 1616 aa29.18■■■□□ 2.26
PNKP-203ENST00000593946 SCAF11Q99590 1463 aaKnown RBP29.17■■■□□ 2.26
PNKP-203ENST00000593946 RIMS2Q9UQ26 1411 aa29.16■■■□□ 2.26
PNKP-203ENST00000593946 NUTM2DQ5VT03 806 aaPredicted RBP29.16■■■□□ 2.26
PNKP-203ENST00000593946 C14orf93Q9H972 538 aaKnown RBP29.16■■■□□ 2.26
PNKP-203ENST00000593946 WASHC2AQ641Q2 1341 aa29.15■■■□□ 2.26
PNKP-203ENST00000593946 ST20-MTHFSA0A0A6YYL1 179 aa29.15■■■□□ 2.26
PNKP-203ENST00000593946 ADGRB1O14514 1584 aa29.15■■■□□ 2.26
PNKP-203ENST00000593946 C11orf95C9JLR9 678 aaPredicted RBP29.13■■■□□ 2.25
PNKP-203ENST00000593946 CCDC7Q96M83 1385 aa29.12■■■□□ 2.25
PNKP-203ENST00000593946 SETD1BQ9UPS6 1966 aaKnown RBP29.1■■■□□ 2.25
PNKP-203ENST00000593946 DDX10Q13206 875 aaKnown RBP29.09■■■□□ 2.25
PNKP-203ENST00000593946 PLPPR3Q6T4P5 718 aa29.09■■■□□ 2.25
PNKP-203ENST00000593946 TMEM2Q9UHN6 1383 aa29.08■■■□□ 2.25
PNKP-203ENST00000593946 KIF7Q2M1P5 1343 aa29.07■■■□□ 2.24
PNKP-203ENST00000593946 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.06■■■□□ 2.24
PNKP-203ENST00000593946 SETD1AO15047 1707 aaKnown RBP29.06■■■□□ 2.24
PNKP-203ENST00000593946 CEP170BQ9Y4F5 1589 aaPredicted RBP29.06■■■□□ 2.24
PNKP-203ENST00000593946 ALKQ9UM73 1620 aa29.05■■■□□ 2.24
PNKP-203ENST00000593946 ZNF142P52746 1687 aaPredicted RBP29.05■■■□□ 2.24
PNKP-203ENST00000593946 EIF3AQ14152 1382 aaKnown RBP29.05■■■□□ 2.24
PNKP-203ENST00000593946 ASXL1Q8IXJ9 1541 aa29.05■■■□□ 2.24
PNKP-203ENST00000593946 NRXN3Q9Y4C0 1643 aa29.04■■■□□ 2.24
PNKP-203ENST00000593946 TESK2Q96S53 571 aa29.04■■■□□ 2.24
PNKP-203ENST00000593946 SLIT1O75093 1534 aa29.04■■■□□ 2.24
PNKP-203ENST00000593946 PTPRMP28827 1452 aa29.02■■■□□ 2.24
PNKP-203ENST00000593946 ARHGAP23Q9P227 1491 aa29.02■■■□□ 2.24
PNKP-203ENST00000593946 HDGFP51858 240 aaKnown RBP29.01■■■□□ 2.23
PNKP-203ENST00000593946 ARHGEF28Q8N1W1 1705 aaKnown RBP29■■■□□ 2.23
PNKP-203ENST00000593946 TMEM132EQ6IEE7 984 aa28.99■■■□□ 2.23
PNKP-203ENST00000593946 THEMISQ8N1K5 641 aaPredicted RBP28.94■■■□□ 2.22
PNKP-203ENST00000593946 QRICH2Q9H0J4 1663 aa28.94■■■□□ 2.22
PNKP-203ENST00000593946 DISP3Q9P2K9 1392 aa28.93■■■□□ 2.22
PNKP-203ENST00000593946 SENP3Q9H4L4 574 aaPredicted RBP28.92■■■□□ 2.22
PNKP-203ENST00000593946 SBNO2Q9Y2G9 1366 aa28.92■■■□□ 2.22
PNKP-203ENST00000593946 MIER1Q8N108 512 aa28.91■■■□□ 2.22
PNKP-203ENST00000593946 PLEKHG1Q9ULL1 1385 aa28.91■■■□□ 2.22
PNKP-203ENST00000593946 LTKP29376 864 aa28.91■■■□□ 2.22
PNKP-203ENST00000593946 TRAK1Q9UPV9 953 aa28.91■■■□□ 2.22
PNKP-203ENST00000593946 TMF1P82094 1093 aa28.9■■■□□ 2.22
PNKP-203ENST00000593946 YTHDC2Q9H6S0 1430 aaKnown RBP28.9■■■□□ 2.22
PNKP-203ENST00000593946 TXNDC2Q86VQ3 553 aa28.88■■■□□ 2.21
PNKP-203ENST00000593946 EID1Q9Y6B2 187 aa28.88■■■□□ 2.21
PNKP-203ENST00000593946 CENPJQ9HC77 1338 aaPredicted RBP28.88■■■□□ 2.21
PNKP-203ENST00000593946 SLC24A1O60721 1099 aa28.86■■■□□ 2.21
PNKP-203ENST00000593946 ADAMTS13Q76LX8 1427 aa28.85■■■□□ 2.21
PNKP-203ENST00000593946 POLR3GLQ9BT43 218 aa28.85■■■□□ 2.21
PNKP-203ENST00000593946 KNDC1Q76NI1 1749 aa28.83■■■□□ 2.21
PNKP-203ENST00000593946 DLC1Q96QB1 1528 aa28.83■■■□□ 2.21
PNKP-203ENST00000593946 MED14O60244 1454 aa28.83■■■□□ 2.21
PNKP-203ENST00000593946 LRPPRCP42704 1394 aaKnown RBP28.82■■■□□ 2.2
PNKP-203ENST00000593946 METP08581 1390 aa28.81■■■□□ 2.2
PNKP-203ENST00000593946 STK26Q9P289 416 aa28.8■■■□□ 2.2
PNKP-203ENST00000593946 DIP2AQ14689 1571 aa28.79■■■□□ 2.2
PNKP-203ENST00000593946 CDCA8Q53HL2 280 aa28.78■■■□□ 2.2
PNKP-203ENST00000593946 ABCC11Q96J66 1382 aa28.78■■■□□ 2.2
PNKP-203ENST00000593946 MYOM1P52179 1685 aa28.77■■■□□ 2.2
PNKP-203ENST00000593946 BCANQ96GW7 911 aa28.77■■■□□ 2.2
PNKP-203ENST00000593946 TECPR2O15040 1411 aa28.75■■■□□ 2.19
PNKP-203ENST00000593946 CPS1P31327 1500 aa28.74■■■□□ 2.19
PNKP-203ENST00000593946 KDM4FA0A1W2PPD8 638 aa28.73■■■□□ 2.19
PNKP-203ENST00000593946 ANP32CO43423 234 aa28.72■■■□□ 2.19
PNKP-203ENST00000593946 TULP4Q9NRJ4 1543 aa28.72■■■□□ 2.19
PNKP-203ENST00000593946 PRAM1Q96QH2 718 aa28.71■■■□□ 2.19
PNKP-203ENST00000593946 ANKLE2Q86XL3 938 aa28.7■■■□□ 2.19
PNKP-203ENST00000593946 TBX22Q9Y458 520 aa28.7■■■□□ 2.19
PNKP-203ENST00000593946 SLC26A8Q96RN1 970 aa28.68■■■□□ 2.18
PNKP-203ENST00000593946 FAM135BQ49AJ0 1406 aa28.68■■■□□ 2.18
PNKP-203ENST00000593946 POGKQ9P215 609 aa28.67■■■□□ 2.18
PNKP-203ENST00000593946 SIRT1Q96EB6 747 aa28.66■■■□□ 2.18
PNKP-203ENST00000593946 SAFB2Q14151 953 aaKnown RBP eCLIP28.65■■■□□ 2.18
PNKP-203ENST00000593946 PTPRUQ92729 1446 aa28.65■■■□□ 2.18
PNKP-203ENST00000593946 EVC2Q86UK5 1308 aa28.64■■■□□ 2.18
PNKP-203ENST00000593946 XRN1Q8IZH2 1706 aaKnown RBP28.63■■■□□ 2.17
PNKP-203ENST00000593946 PLEKHH1Q9ULM0 1364 aa28.63■■■□□ 2.17
PNKP-203ENST00000593946 PUS7Q96PZ0 661 aaKnown RBP28.63■■■□□ 2.17
PNKP-203ENST00000593946 WAPLQ7Z5K2 1190 aa28.6■■■□□ 2.17
PNKP-203ENST00000593946 PIK3R4Q99570 1358 aa28.6■■■□□ 2.17
PNKP-203ENST00000593946 ROBO2Q9HCK4 1378 aa28.59■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms