RNA–Protein interactions for RNA: ENST00000589933.1

TMC6-213, Transcript of transmembrane channel like 6, human

TSL 3

Gene TMC6, Length 580 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TMC6-213	ENST00000589933	MED1	Q15648	1581 aa	Predicted RBP	32.19	■■■□□ 2.74
TMC6-213	ENST00000589933	IQGAP3	Q86VI3	1631 aa		32.18	■■■□□ 2.74
TMC6-213	ENST00000589933		E9PCH4	1651 aa		32.17	■■■□□ 2.74
TMC6-213	ENST00000589933	CHGA	P10645	457 aa	Known RBP	32.16	■■■□□ 2.74
TMC6-213	ENST00000589933	PROSER2	Q86WR7	435 aa	Predicted RBP	32.16	■■■□□ 2.74
TMC6-213	ENST00000589933	TMEM131L	A2VDJ0	1609 aa		32.15	■■■□□ 2.74
TMC6-213	ENST00000589933	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	32.14	■■■□□ 2.74
TMC6-213	ENST00000589933	NUP155	O75694	1391 aa		32.13	■■■□□ 2.73
TMC6-213	ENST00000589933	PPARGC1B	Q86YN6	1023 aa	Known RBP	32.13	■■■□□ 2.73
TMC6-213	ENST00000589933	SENP3	Q9H4L4	574 aa	Predicted RBP	32.13	■■■□□ 2.73
TMC6-213	ENST00000589933	RIMS2	Q9UQ26	1411 aa		32.13	■■■□□ 2.73
TMC6-213	ENST00000589933	TMEM94	Q12767	1356 aa		32.12	■■■□□ 2.73
TMC6-213	ENST00000589933	NKTR	P30414	1462 aa	Known RBP	32.11	■■■□□ 2.73
TMC6-213	ENST00000589933	PLEKHG1	Q9ULL1	1385 aa		32.11	■■■□□ 2.73
TMC6-213	ENST00000589933	PHF23	Q9BUL5	403 aa	Predicted RBP	32.1	■■■□□ 2.73
TMC6-213	ENST00000589933	ZFYVE9	O95405	1425 aa		32.09	■■■□□ 2.73
TMC6-213	ENST00000589933	NWD1	Q149M9	1564 aa		32.08	■■■□□ 2.73
TMC6-213	ENST00000589933	CHD2	O14647	1828 aa	Known RBP	32.06	■■■□□ 2.72
TMC6-213	ENST00000589933	FAM135B	Q49AJ0	1406 aa		32.03	■■■□□ 2.72
TMC6-213	ENST00000589933	MSH6	P52701	1360 aa		32.03	■■■□□ 2.72
TMC6-213	ENST00000589933	TBX22	Q9Y458	520 aa		32.01	■■■□□ 2.71
TMC6-213	ENST00000589933	DIP2A	Q14689	1571 aa		31.97	■■■□□ 2.71
TMC6-213	ENST00000589933	SPHKAP	Q2M3C7	1700 aa		31.97	■■■□□ 2.71
TMC6-213	ENST00000589933	RBM33	Q96EV2	1170 aa	Known RBP	31.96	■■■□□ 2.71
TMC6-213	ENST00000589933	ROBO1	Q9Y6N7	1651 aa		31.95	■■■□□ 2.7
TMC6-213	ENST00000589933	NUTM2D	Q5VT03	806 aa	Predicted RBP	31.93	■■■□□ 2.7
TMC6-213	ENST00000589933	RRBP1	Q9P2E9	1410 aa	Known RBP	31.92	■■■□□ 2.7
TMC6-213	ENST00000589933	C14orf37	Q86TY3	774 aa		31.92	■■■□□ 2.7
TMC6-213	ENST00000589933	PIK3R4	Q99570	1358 aa		31.92	■■■□□ 2.7
TMC6-213	ENST00000589933	NCOA3	Q9Y6Q9	1424 aa		31.91	■■■□□ 2.7
TMC6-213	ENST00000589933	SLAIN2	Q9P270	581 aa		31.88	■■■□□ 2.69
TMC6-213	ENST00000589933	TRPM2	O94759	1503 aa		31.88	■■■□□ 2.69
TMC6-213	ENST00000589933	ADAMTS13	Q76LX8	1427 aa		31.87	■■■□□ 2.69
TMC6-213	ENST00000589933	ZNF326	Q5BKZ1	582 aa	Known RBP	31.87	■■■□□ 2.69
TMC6-213	ENST00000589933	KIF1B	O60333	1816 aa		31.82	■■■□□ 2.68
TMC6-213	ENST00000589933	PHLPP1	O60346	1717 aa		31.8	■■■□□ 2.68
TMC6-213	ENST00000589933	CADPS2	Q86UW7	1296 aa		31.8	■■■□□ 2.68
TMC6-213	ENST00000589933	NAIP	Q13075	1403 aa		31.8	■■■□□ 2.68
TMC6-213	ENST00000589933	ATF3	P18847	181 aa		31.79	■■■□□ 2.68
TMC6-213	ENST00000589933	C19orf44	Q9H6X5	657 aa		31.78	■■■□□ 2.68
TMC6-213	ENST00000589933	AMOTL2	Q9Y2J4	779 aa		31.78	■■■□□ 2.68
TMC6-213	ENST00000589933	TRIM52	Q96A61	297 aa		31.77	■■■□□ 2.68
TMC6-213	ENST00000589933	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	31.76	■■■□□ 2.67
TMC6-213	ENST00000589933	SETBP1	Q9Y6X0	1596 aa		31.74	■■■□□ 2.67
TMC6-213	ENST00000589933	CLTCL1	P53675	1640 aa		31.73	■■■□□ 2.67
TMC6-213	ENST00000589933	HFM1	A2PYH4	1435 aa		31.72	■■■□□ 2.67
TMC6-213	ENST00000589933	NRXN3	Q9Y4C0	1643 aa		31.7	■■■□□ 2.66
TMC6-213	ENST00000589933	JCAD	Q9P266	1359 aa		31.69	■■■□□ 2.66
TMC6-213	ENST00000589933	PTPRU	Q92729	1446 aa		31.66	■■■□□ 2.66
TMC6-213	ENST00000589933	XRN1	Q8IZH2	1706 aa	Known RBP	31.66	■■■□□ 2.66
TMC6-213	ENST00000589933	SLC4A1AP	Q9BWU0	796 aa	Known RBP	31.66	■■■□□ 2.66
TMC6-213	ENST00000589933	NEXMIF	Q5QGS0	1516 aa		31.65	■■■□□ 2.66
TMC6-213	ENST00000589933	DCC	P43146	1447 aa		31.64	■■■□□ 2.66
TMC6-213	ENST00000589933	VGF	O15240	615 aa	Predicted RBP	31.62	■■■□□ 2.65
TMC6-213	ENST00000589933	RGS17	Q9UGC6	210 aa	Predicted RBP	31.62	■■■□□ 2.65
TMC6-213	ENST00000589933	COL16A1	Q07092	1604 aa	Predicted RBP	31.61	■■■□□ 2.65
TMC6-213	ENST00000589933	MET	P08581	1390 aa		31.58	■■■□□ 2.65
TMC6-213	ENST00000589933	RPGRIP1L	Q68CZ1	1315 aa		31.58	■■■□□ 2.65
TMC6-213	ENST00000589933	AHDC1	Q5TGY3	1603 aa	Predicted RBP	31.58	■■■□□ 2.65
TMC6-213	ENST00000589933	SPATA31A6	Q5VVP1	1343 aa		31.56	■■■□□ 2.64
TMC6-213	ENST00000589933	MEX3C	Q5U5Q3	659 aa	Known RBP	31.52	■■■□□ 2.64
TMC6-213	ENST00000589933	BRINP3	Q76B58	766 aa		31.52	■■■□□ 2.64
TMC6-213	ENST00000589933	SHPRH	Q149N8	1683 aa		31.51	■■■□□ 2.64
TMC6-213	ENST00000589933	ADGRL3	Q9HAR2	1447 aa		31.5	■■■□□ 2.63
TMC6-213	ENST00000589933	PPL	O60437	1756 aa		31.5	■■■□□ 2.63
TMC6-213	ENST00000589933	POTEA	Q6S8J7	498 aa		31.49	■■■□□ 2.63
TMC6-213	ENST00000589933	ACIN1	Q9UKV3	1341 aa	Known RBP	31.48	■■■□□ 2.63
TMC6-213	ENST00000589933	MST1R	Q04912	1400 aa		31.47	■■■□□ 2.63
TMC6-213	ENST00000589933	ASXL1	Q8IXJ9	1541 aa		31.46	■■■□□ 2.63
TMC6-213	ENST00000589933	NALCN	Q8IZF0	1738 aa		31.45	■■■□□ 2.63
TMC6-213	ENST00000589933	SETD1A	O15047	1707 aa	Known RBP	31.44	■■■□□ 2.62
TMC6-213	ENST00000589933	CCDC144A	A2RUR9	1427 aa		31.43	■■■□□ 2.62
TMC6-213	ENST00000589933	PTCH1	Q13635	1447 aa		31.42	■■■□□ 2.62
TMC6-213	ENST00000589933	NHSL1	Q5SYE7	1610 aa		31.42	■■■□□ 2.62
TMC6-213	ENST00000589933	ZNF772	Q68DY9	489 aa	Predicted RBP	31.41	■■■□□ 2.62
TMC6-213	ENST00000589933	LRRC59	Q96AG4	307 aa	Known RBP	31.4	■■■□□ 2.62
TMC6-213	ENST00000589933	FOXD1	Q16676	465 aa		31.39	■■■□□ 2.62
TMC6-213	ENST00000589933	MPHOSPH9	Q99550	1183 aa		31.38	■■■□□ 2.61
TMC6-213	ENST00000589933	SETD5	Q9C0A6	1442 aa		31.37	■■■□□ 2.61
TMC6-213	ENST00000589933	LRP6	O75581	1613 aa		31.37	■■■□□ 2.61
TMC6-213	ENST00000589933	NUTM2B	A6NNL0	878 aa	Predicted RBP	31.35	■■■□□ 2.61
TMC6-213	ENST00000589933	NUTM2E	B1AL46	878 aa	Predicted RBP	31.35	■■■□□ 2.61
TMC6-213	ENST00000589933	NUTM2A	Q8IVF1	878 aa	Predicted RBP	31.35	■■■□□ 2.61
TMC6-213	ENST00000589933	PRAG1	Q86YV5	1406 aa		31.33	■■■□□ 2.61
TMC6-213	ENST00000589933	RGL3	Q3MIN7	710 aa		31.33	■■■□□ 2.61
TMC6-213	ENST00000589933	ANKRD30B	Q9BXX2	1392 aa		31.32	■■■□□ 2.6
TMC6-213	ENST00000589933	ROBO2	Q9HCK4	1378 aa		31.32	■■■□□ 2.6
TMC6-213	ENST00000589933	C1orf167	Q5SNV9	1468 aa		31.32	■■■□□ 2.6
TMC6-213	ENST00000589933	IFT172	Q9UG01	1749 aa		31.27	■■■□□ 2.6
TMC6-213	ENST00000589933	SPATA31E1	Q6ZUB1	1445 aa		31.25	■■■□□ 2.59
TMC6-213	ENST00000589933	ADGRF5	Q8IZF2	1346 aa		31.24	■■■□□ 2.59
TMC6-213	ENST00000589933	DDX17	Q92841	729 aa	Known RBP	31.23	■■■□□ 2.59
TMC6-213	ENST00000589933	LAMC1	P11047	1609 aa		31.22	■■■□□ 2.59
TMC6-213	ENST00000589933	PNPLA6	Q8IY17	1366 aa		31.21	■■■□□ 2.59
TMC6-213	ENST00000589933	RXRB	P28702	533 aa		31.21	■■■□□ 2.59
TMC6-213	ENST00000589933	ORAI2	Q96SN7	254 aa		31.2	■■■□□ 2.59
TMC6-213	ENST00000589933	CDC42BPG	Q6DT37	1551 aa		31.19	■■■□□ 2.58
TMC6-213	ENST00000589933	STK26	Q9P289	416 aa		31.19	■■■□□ 2.58
TMC6-213	ENST00000589933	AFF2	P51816	1311 aa		31.19	■■■□□ 2.58
TMC6-213	ENST00000589933	LRPPRC	P42704	1394 aa	Known RBP	31.17	■■■□□ 2.58

Retrieved 100 of 20,778 RNA–protein pairs in 131.7 ms