RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 ZFYVE9O95405 1425 aa31.17■■■□□ 2.58
SHMT1-209ENST00000582653 TMEM94Q12767 1356 aa31.17■■■□□ 2.58
SHMT1-209ENST00000582653 ABCF1Q8NE71 845 aaKnown RBP eCLIP31.16■■■□□ 2.58
SHMT1-209ENST00000582653 XIRP1Q702N8 1843 aaKnown RBP31.16■■■□□ 2.58
SHMT1-209ENST00000582653 RIMS2Q9UQ26 1411 aa31.15■■■□□ 2.58
SHMT1-209ENST00000582653 CHGAP10645 457 aaKnown RBP31.15■■■□□ 2.58
SHMT1-209ENST00000582653 PLEKHG1Q9ULL1 1385 aa31.15■■■□□ 2.58
SHMT1-209ENST00000582653 RRBP1Q9P2E9 1410 aaKnown RBP31.15■■■□□ 2.58
SHMT1-209ENST00000582653 TMEM131LA2VDJ0 1609 aa31.14■■■□□ 2.58
SHMT1-209ENST00000582653 E9PCH4 1651 aa31.14■■■□□ 2.58
SHMT1-209ENST00000582653 PPP1R15AO75807 674 aaPredicted RBP31.14■■■□□ 2.58
SHMT1-209ENST00000582653 IQGAP3Q86VI3 1631 aa31.13■■■□□ 2.57
SHMT1-209ENST00000582653 SENP3Q9H4L4 574 aaPredicted RBP31.13■■■□□ 2.57
SHMT1-209ENST00000582653 TBX22Q9Y458 520 aa31.12■■■□□ 2.57
SHMT1-209ENST00000582653 RBM33Q96EV2 1170 aaKnown RBP31.1■■■□□ 2.57
SHMT1-209ENST00000582653 FAM135BQ49AJ0 1406 aa31.09■■■□□ 2.57
SHMT1-209ENST00000582653 MED1Q15648 1581 aaPredicted RBP31.09■■■□□ 2.57
SHMT1-209ENST00000582653 MYO5BQ9ULV0 1848 aa31.08■■■□□ 2.57
SHMT1-209ENST00000582653 NKTRP30414 1462 aaKnown RBP31.06■■■□□ 2.56
SHMT1-209ENST00000582653 NUTM2DQ5VT03 806 aaPredicted RBP31.04■■■□□ 2.56
SHMT1-209ENST00000582653 NWD1Q149M9 1564 aa31.04■■■□□ 2.56
SHMT1-209ENST00000582653 NAIPQ13075 1403 aa30.99■■■□□ 2.55
SHMT1-209ENST00000582653 CHD2O14647 1828 aaKnown RBP30.98■■■□□ 2.55
SHMT1-209ENST00000582653 MSH6P52701 1360 aa30.98■■■□□ 2.55
SHMT1-209ENST00000582653 PHF23Q9BUL5 403 aaPredicted RBP30.98■■■□□ 2.55
SHMT1-209ENST00000582653 SLAIN2Q9P270 581 aa30.97■■■□□ 2.55
SHMT1-209ENST00000582653 ADAMTS13Q76LX8 1427 aa30.97■■■□□ 2.55
SHMT1-209ENST00000582653 PIK3R4Q99570 1358 aa30.94■■■□□ 2.54
SHMT1-209ENST00000582653 NCOA3Q9Y6Q9 1424 aa30.94■■■□□ 2.54
SHMT1-209ENST00000582653 DIP2AQ14689 1571 aa30.88■■■□□ 2.53
SHMT1-209ENST00000582653 ZNF326Q5BKZ1 582 aaKnown RBP30.88■■■□□ 2.53
SHMT1-209ENST00000582653 AMOTL2Q9Y2J4 779 aa30.88■■■□□ 2.53
SHMT1-209ENST00000582653 TRIM52Q96A61 297 aa30.87■■■□□ 2.53
SHMT1-209ENST00000582653 C19orf44Q9H6X5 657 aa30.87■■■□□ 2.53
SHMT1-209ENST00000582653 ROBO1Q9Y6N7 1651 aa30.87■■■□□ 2.53
SHMT1-209ENST00000582653 SPHKAPQ2M3C7 1700 aa30.87■■■□□ 2.53
SHMT1-209ENST00000582653 HFM1A2PYH4 1435 aa30.86■■■□□ 2.53
SHMT1-209ENST00000582653 C14orf37Q86TY3 774 aa30.85■■■□□ 2.53
SHMT1-209ENST00000582653 CADPS2Q86UW7 1296 aa30.82■■■□□ 2.52
SHMT1-209ENST00000582653 RGS17Q9UGC6 210 aaPredicted RBP30.81■■■□□ 2.52
SHMT1-209ENST00000582653 TRPM2O94759 1503 aa30.81■■■□□ 2.52
SHMT1-209ENST00000582653 PTPRUQ92729 1446 aa30.8■■■□□ 2.52
SHMT1-209ENST00000582653 ATF3P18847 181 aa30.79■■■□□ 2.52
SHMT1-209ENST00000582653 CLTCL1P53675 1640 aa30.76■■■□□ 2.52
SHMT1-209ENST00000582653 SLC4A1APQ9BWU0 796 aaKnown RBP30.75■■■□□ 2.51
SHMT1-209ENST00000582653 SETBP1Q9Y6X0 1596 aa30.75■■■□□ 2.51
SHMT1-209ENST00000582653 SIPA1L2Q9P2F8 1722 aaPredicted RBP30.72■■■□□ 2.51
SHMT1-209ENST00000582653 NRXN3Q9Y4C0 1643 aa30.72■■■□□ 2.51
SHMT1-209ENST00000582653 METP08581 1390 aa30.71■■■□□ 2.51
SHMT1-209ENST00000582653 JCADQ9P266 1359 aa30.7■■■□□ 2.51
SHMT1-209ENST00000582653 VGFO15240 615 aaPredicted RBP30.69■■■□□ 2.5
SHMT1-209ENST00000582653 NEXMIFQ5QGS0 1516 aa30.68■■■□□ 2.5
SHMT1-209ENST00000582653 PHLPP1O60346 1717 aa30.67■■■□□ 2.5
SHMT1-209ENST00000582653 FOXD1Q16676 465 aa30.67■■■□□ 2.5
SHMT1-209ENST00000582653 RPGRIP1LQ68CZ1 1315 aa30.66■■■□□ 2.5
SHMT1-209ENST00000582653 KIF1BO60333 1816 aa30.65■■■□□ 2.5
SHMT1-209ENST00000582653 BRINP3Q76B58 766 aa30.63■■■□□ 2.49
SHMT1-209ENST00000582653 XRN1Q8IZH2 1706 aaKnown RBP30.63■■■□□ 2.49
SHMT1-209ENST00000582653 DCCP43146 1447 aa30.63■■■□□ 2.49
SHMT1-209ENST00000582653 POTEAQ6S8J7 498 aa30.62■■■□□ 2.49
SHMT1-209ENST00000582653 COL16A1Q07092 1604 aaPredicted RBP30.59■■■□□ 2.49
SHMT1-209ENST00000582653 SPATA31A6Q5VVP1 1343 aa30.58■■■□□ 2.49
SHMT1-209ENST00000582653 AHDC1Q5TGY3 1603 aaPredicted RBP30.56■■■□□ 2.48
SHMT1-209ENST00000582653 MPHOSPH9Q99550 1183 aa30.56■■■□□ 2.48
SHMT1-209ENST00000582653 MST1RQ04912 1400 aa30.53■■■□□ 2.48
SHMT1-209ENST00000582653 ADGRL3Q9HAR2 1447 aa30.51■■■□□ 2.47
SHMT1-209ENST00000582653 ACIN1Q9UKV3 1341 aaKnown RBP30.47■■■□□ 2.47
SHMT1-209ENST00000582653 SETD5Q9C0A6 1442 aa30.47■■■□□ 2.47
SHMT1-209ENST00000582653 LRRC59Q96AG4 307 aaKnown RBP30.46■■■□□ 2.47
SHMT1-209ENST00000582653 ASXL1Q8IXJ9 1541 aa30.46■■■□□ 2.47
SHMT1-209ENST00000582653 RGL3Q3MIN7 710 aa30.45■■■□□ 2.47
SHMT1-209ENST00000582653 MEX3CQ5U5Q3 659 aaKnown RBP30.45■■■□□ 2.47
SHMT1-209ENST00000582653 CCDC144AA2RUR9 1427 aa30.45■■■□□ 2.46
SHMT1-209ENST00000582653 PTCH1Q13635 1447 aa30.45■■■□□ 2.46
SHMT1-209ENST00000582653 ROBO2Q9HCK4 1378 aa30.44■■■□□ 2.46
SHMT1-209ENST00000582653 LRP6O75581 1613 aa30.43■■■□□ 2.46
SHMT1-209ENST00000582653 SETD1AO15047 1707 aaKnown RBP30.42■■■□□ 2.46
SHMT1-209ENST00000582653 PRAG1Q86YV5 1406 aa30.42■■■□□ 2.46
SHMT1-209ENST00000582653 PPLO60437 1756 aa30.42■■■□□ 2.46
SHMT1-209ENST00000582653 SHPRHQ149N8 1683 aa30.42■■■□□ 2.46
SHMT1-209ENST00000582653 ZNF772Q68DY9 489 aaPredicted RBP30.41■■■□□ 2.46
SHMT1-209ENST00000582653 ADGRF5Q8IZF2 1346 aa30.41■■■□□ 2.46
SHMT1-209ENST00000582653 DDX17Q92841 729 aaKnown RBP30.39■■■□□ 2.46
SHMT1-209ENST00000582653 NALCNQ8IZF0 1738 aa30.39■■■□□ 2.45
SHMT1-209ENST00000582653 SPATA31E1Q6ZUB1 1445 aa30.39■■■□□ 2.45
SHMT1-209ENST00000582653 C1orf167Q5SNV9 1468 aa30.38■■■□□ 2.45
SHMT1-209ENST00000582653 NUTM2BA6NNL0 878 aaPredicted RBP30.38■■■□□ 2.45
SHMT1-209ENST00000582653 NUTM2EB1AL46 878 aaPredicted RBP30.38■■■□□ 2.45
SHMT1-209ENST00000582653 NUTM2AQ8IVF1 878 aaPredicted RBP30.38■■■□□ 2.45
SHMT1-209ENST00000582653 ANKRD30BQ9BXX2 1392 aa30.37■■■□□ 2.45
SHMT1-209ENST00000582653 RAB3GAP2Q9H2M9 1393 aa30.37■■■□□ 2.45
SHMT1-209ENST00000582653 NHSL1Q5SYE7 1610 aa30.36■■■□□ 2.45
SHMT1-209ENST00000582653 ORAI2Q96SN7 254 aa30.34■■■□□ 2.45
SHMT1-209ENST00000582653 SOS2Q07890 1332 aaPredicted RBP30.28■■■□□ 2.44
SHMT1-209ENST00000582653 STK26Q9P289 416 aa30.28■■■□□ 2.44
SHMT1-209ENST00000582653 PNPLA6Q8IY17 1366 aa30.28■■■□□ 2.44
SHMT1-209ENST00000582653 TMEM132EQ6IEE7 984 aa30.27■■■□□ 2.44
SHMT1-209ENST00000582653 ABCC11Q96J66 1382 aa30.27■■■□□ 2.44
SHMT1-209ENST00000582653 WAPLQ7Z5K2 1190 aa30.26■■■□□ 2.43
SHMT1-209ENST00000582653 LRPPRCP42704 1394 aaKnown RBP30.26■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms