RNA–Protein interactions for RNA: ENST00000578049.3

SEC22B-201, Transcript of SEC22 homolog B, vesicle trafficking protein (gene/pseudogene), humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SEC22B, Length 6,922 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC22B-201ENST00000578049 DHX8Q14562 1220 aaKnown RBP13.09□□□□□ -0.31
SEC22B-201ENST00000578049 HOOK1Q9UJC3 728 aaKnown RBP13.09□□□□□ -0.31
SEC22B-201ENST00000578049 IPO7O95373 1038 aaKnown RBP13.09□□□□□ -0.31
SEC22B-201ENST00000578049 TAF7LQ5H9L4 462 aa13.09□□□□□ -0.31
SEC22B-201ENST00000578049 NOL8Q76FK4 1167 aaKnown RBP13.08□□□□□ -0.32
SEC22B-201ENST00000578049 RASSF8Q8NHQ8 419 aa13.08□□□□□ -0.32
SEC22B-201ENST00000578049 ACBD3Q9H3P7 528 aa13.08□□□□□ -0.32
SEC22B-201ENST00000578049 RRBP1Q9P2E9 1410 aaKnown RBP13.08□□□□□ -0.32
SEC22B-201ENST00000578049 ANKRD20A12PQ8NF67 263 aa13.08□□□□□ -0.32
SEC22B-201ENST00000578049 FAM13BQ9NYF5 915 aa13.08□□□□□ -0.32
SEC22B-201ENST00000578049 TULP1O00294 542 aaPredicted RBP13.08□□□□□ -0.32
SEC22B-201ENST00000578049 GNAI1P63096 354 aa13.08□□□□□ -0.32
SEC22B-201ENST00000578049 ATAD2BQ9ULI0 1458 aa13.08□□□□□ -0.32
SEC22B-201ENST00000578049 NASPP49321 788 aaPredicted RBP13.07□□□□□ -0.32
SEC22B-201ENST00000578049 RILPL2Q969X0 211 aa13.07□□□□□ -0.32
SEC22B-201ENST00000578049 CDC45O75419 566 aa13.07□□□□□ -0.32
SEC22B-201ENST00000578049 AMPHP49418 695 aa13.07□□□□□ -0.32
SEC22B-201ENST00000578049 RRP7AQ9Y3A4 280 aaKnown RBP13.07□□□□□ -0.32
SEC22B-201ENST00000578049 DIAPH1O60610 1272 aaKnown RBP13.06□□□□□ -0.32
SEC22B-201ENST00000578049 CEP89Q96ST8 783 aa13.06□□□□□ -0.32
SEC22B-201ENST00000578049 COG3Q96JB2 828 aa13.06□□□□□ -0.32
SEC22B-201ENST00000578049 AMER1Q5JTC6 1135 aaPredicted RBP13.06□□□□□ -0.32
SEC22B-201ENST00000578049 CCDC173Q0VFZ6 552 aa13.06□□□□□ -0.32
SEC22B-201ENST00000578049 BCL2L13Q9BXK5 485 aa13.06□□□□□ -0.32
SEC22B-201ENST00000578049 SMARCA4P51532 1647 aa13.05□□□□□ -0.32
SEC22B-201ENST00000578049 TPD52L1Q16890 204 aaPredicted RBP13.05□□□□□ -0.32
SEC22B-201ENST00000578049 LRRC9Q6ZRR7 1453 aa13.05□□□□□ -0.32
SEC22B-201ENST00000578049 SCAPERQ9BY12 1400 aa13.05□□□□□ -0.32
SEC22B-201ENST00000578049 TRAK2O60296 914 aa13.05□□□□□ -0.32
SEC22B-201ENST00000578049 CT47B1P0C2W7 299 aaPredicted RBP13.05□□□□□ -0.32
SEC22B-201ENST00000578049 TRAK1Q9UPV9 953 aa13.04□□□□□ -0.32
SEC22B-201ENST00000578049 SMC3Q9UQE7 1217 aa13.04□□□□□ -0.32
SEC22B-201ENST00000578049 NOM1Q5C9Z4 860 aaKnown RBP13.04□□□□□ -0.32
SEC22B-201ENST00000578049 KIF21BO75037 1637 aa13.04□□□□□ -0.32
SEC22B-201ENST00000578049 RUSC2Q8N2Y8 1516 aa13.04□□□□□ -0.32
SEC22B-201ENST00000578049 FYCO1Q9BQS8 1478 aa13.04□□□□□ -0.32
SEC22B-201ENST00000578049 SASS6Q6UVJ0 657 aa13.04□□□□□ -0.32
SEC22B-201ENST00000578049 CIZ1Q9ULV3 898 aaPredicted RBP13.04□□□□□ -0.32
SEC22B-201ENST00000578049 SYNE3Q6ZMZ3 975 aa13.04□□□□□ -0.32
SEC22B-201ENST00000578049 RABEP1Q15276 862 aa13.04□□□□□ -0.32
SEC22B-201ENST00000578049 CCDC66A2RUB6 948 aa13.03□□□□□ -0.32
SEC22B-201ENST00000578049 CCDC47Q96A33 483 aaKnown RBP13.03□□□□□ -0.32
SEC22B-201ENST00000578049 CCDC73Q6ZRK6 1079 aa13.03□□□□□ -0.32
SEC22B-201ENST00000578049 BACH2Q9BYV9 841 aa13.03□□□□□ -0.32
SEC22B-201ENST00000578049 EID1Q9Y6B2 187 aa13.03□□□□□ -0.32
SEC22B-201ENST00000578049 SMG6Q86US8 1419 aaKnown RBP13.03□□□□□ -0.32
SEC22B-201ENST00000578049 ERC2O15083 957 aa13.03□□□□□ -0.32
SEC22B-201ENST00000578049 NEXNQ0ZGT2 675 aa13.03□□□□□ -0.32
SEC22B-201ENST00000578049 ERICH3Q5RHP9 1530 aa13.03□□□□□ -0.32
SEC22B-201ENST00000578049 CSB-PGBD3P0DP91 1061 aa13.03□□□□□ -0.32
SEC22B-201ENST00000578049 FOXD4L5Q5VV16 416 aaPredicted RBP13.03□□□□□ -0.32
SEC22B-201ENST00000578049 NGDNQ8NEJ9 315 aaKnown RBP13.03□□□□□ -0.32
SEC22B-201ENST00000578049 FOXD4L4Q8WXT5 416 aaPredicted RBP13.03□□□□□ -0.32
SEC22B-201ENST00000578049 AKAP17AQ02040 695 aaKnown RBP13.03□□□□□ -0.32
SEC22B-201ENST00000578049 JPH4Q96JJ6 628 aa13.02□□□□□ -0.32
SEC22B-201ENST00000578049 NAT10Q9H0A0 1025 aaKnown RBP13.02□□□□□ -0.32
SEC22B-201ENST00000578049 CHMP3Q9Y3E7 222 aa13.02□□□□□ -0.32
SEC22B-201ENST00000578049 BICD2Q8TD16 824 aa13.02□□□□□ -0.32
SEC22B-201ENST00000578049 PAK3O75914 559 aaPredicted RBP13.02□□□□□ -0.33
SEC22B-201ENST00000578049 CDR1P51861 262 aa13.02□□□□□ -0.33
SEC22B-201ENST00000578049 ANO2Q9NQ90 1003 aa13.02□□□□□ -0.33
SEC22B-201ENST00000578049 TRIM29Q14134 588 aa13.02□□□□□ -0.33
SEC22B-201ENST00000578049 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.02□□□□□ -0.33
SEC22B-201ENST00000578049 CASKIN1Q8WXD9 1431 aa13.02□□□□□ -0.33
SEC22B-201ENST00000578049 HOMER1Q86YM7 354 aa13.02□□□□□ -0.33
SEC22B-201ENST00000578049 PDCP20941 246 aa13.01□□□□□ -0.33
SEC22B-201ENST00000578049 CWC22Q9HCG8 908 aaKnown RBP13.01□□□□□ -0.33
SEC22B-201ENST00000578049 CCP110O43303 1012 aa13.01□□□□□ -0.33
SEC22B-201ENST00000578049 CLSTN1O94985 981 aa13.01□□□□□ -0.33
SEC22B-201ENST00000578049 RIPK4P57078 832 aa13.01□□□□□ -0.33
SEC22B-201ENST00000578049 MNS1Q8NEH6 495 aa13□□□□□ -0.33
SEC22B-201ENST00000578049 PDIA4P13667 645 aaKnown RBP13□□□□□ -0.33
SEC22B-201ENST00000578049 IGF1RP08069 1367 aa13□□□□□ -0.33
SEC22B-201ENST00000578049 WWC1Q8IX03 1113 aa13□□□□□ -0.33
SEC22B-201ENST00000578049 GCC1Q96CN9 775 aa13□□□□□ -0.33
SEC22B-201ENST00000578049 CWC15Q9P013 229 aaKnown RBP13□□□□□ -0.33
SEC22B-201ENST00000578049 HSP90B2PQ58FF3 399 aa13□□□□□ -0.33
SEC22B-201ENST00000578049 CPLX1O14810 134 aa12.99□□□□□ -0.33
SEC22B-201ENST00000578049 IFIT2P09913 472 aaKnown RBP12.99□□□□□ -0.33
SEC22B-201ENST00000578049 MCTP1Q6DN14 999 aa12.99□□□□□ -0.33
SEC22B-201ENST00000578049 CCAR2Q8N163 923 aaKnown RBP12.99□□□□□ -0.33
SEC22B-201ENST00000578049 DDX58O95786 925 aaKnown RBP12.99□□□□□ -0.33
SEC22B-201ENST00000578049 HFM1A2PYH4 1435 aa12.99□□□□□ -0.33
SEC22B-201ENST00000578049 ZNF592Q92610 1267 aa12.99□□□□□ -0.33
SEC22B-201ENST00000578049 TEFQ10587 303 aa12.99□□□□□ -0.33
SEC22B-201ENST00000578049 ERCC4Q92889 916 aaPredicted RBP12.98□□□□□ -0.33
SEC22B-201ENST00000578049 IFT57Q9NWB7 429 aa12.98□□□□□ -0.33
SEC22B-201ENST00000578049 ANKRD50Q9ULJ7 1429 aa12.98□□□□□ -0.33
SEC22B-201ENST00000578049 MLECQ14165 292 aa12.98□□□□□ -0.33
SEC22B-201ENST00000578049 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.98□□□□□ -0.33
SEC22B-201ENST00000578049 LNPKQ9C0E8 428 aa12.98□□□□□ -0.33
SEC22B-201ENST00000578049 ELL2O00472 640 aaPredicted RBP12.97□□□□□ -0.33
SEC22B-201ENST00000578049 PSMA5P28066 241 aa12.97□□□□□ -0.33
SEC22B-201ENST00000578049 CAVIN1Q6NZI2 390 aaKnown RBP12.97□□□□□ -0.33
SEC22B-201ENST00000578049 TOMM22Q9NS69 142 aa12.97□□□□□ -0.33
SEC22B-201ENST00000578049 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.97□□□□□ -0.33
SEC22B-201ENST00000578049 C9orf78Q9NZ63 289 aaPredicted RBP12.97□□□□□ -0.33
SEC22B-201ENST00000578049 RRP9O43818 475 aaKnown RBP12.97□□□□□ -0.33
SEC22B-201ENST00000578049 R3HCC1Q9Y3T6 440 aaKnown RBP12.97□□□□□ -0.33
SEC22B-201ENST00000578049 TRDNQ13061 729 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms