RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 CCDC125Q86Z20 511 aa3.71□□□□□ -1.82
SMCHD1-203ENST00000577880 BCORL1Q5H9F3 1711 aa3.71□□□□□ -1.82
SMCHD1-203ENST00000577880 AQRO60306 1485 aaKnown RBP eCLIP3.71□□□□□ -1.822e-6■■■■■ 29.5
SMCHD1-203ENST00000577880 ADAMTS2O95450 1211 aa3.71□□□□□ -1.82
SMCHD1-203ENST00000577880 MROH2BQ7Z745 1585 aa3.71□□□□□ -1.82
SMCHD1-203ENST00000577880 DHX57Q6P158 1386 aaKnown RBP3.7□□□□□ -1.82
SMCHD1-203ENST00000577880 NGEFQ8N5V2 710 aa3.7□□□□□ -1.82
SMCHD1-203ENST00000577880 ROCK2O75116 1388 aaKnown RBP3.7□□□□□ -1.82
SMCHD1-203ENST00000577880 GRIN2BQ13224 1484 aa3.7□□□□□ -1.82
SMCHD1-203ENST00000577880 NLRP13Q86W25 1043 aa3.7□□□□□ -1.82
SMCHD1-203ENST00000577880 ABTB2Q8N961 1025 aa3.7□□□□□ -1.82
SMCHD1-203ENST00000577880 RBM42Q9BTD8 480 aaKnown RBP3.7□□□□□ -1.82
SMCHD1-203ENST00000577880 BCL11BQ9C0K0 894 aaPredicted RBP3.7□□□□□ -1.82
SMCHD1-203ENST00000577880 DDX58O95786 925 aaKnown RBP3.7□□□□□ -1.82
SMCHD1-203ENST00000577880 MCCP23508 829 aa3.7□□□□□ -1.82
SMCHD1-203ENST00000577880 GOLGA6L22H0YM25 854 aa3.7□□□□□ -1.82
SMCHD1-203ENST00000577880 LRRFIP1Q32MZ4 808 aaKnown RBP3.7□□□□□ -1.82
SMCHD1-203ENST00000577880 TATP17735 454 aaPredicted RBP3.69□□□□□ -1.82
SMCHD1-203ENST00000577880 HMMRO75330 724 aa3.69□□□□□ -1.82
SMCHD1-203ENST00000577880 RAPGEF3O95398 923 aa3.69□□□□□ -1.82
SMCHD1-203ENST00000577880 MPHOSPH9Q99550 1183 aa3.69□□□□□ -1.82
SMCHD1-203ENST00000577880 AFAP1Q8N556 730 aa3.69□□□□□ -1.82
SMCHD1-203ENST00000577880 SENP3-EIF4A1A0A087X0R7 540 aa3.69□□□□□ -1.82
SMCHD1-203ENST00000577880 NUTM2GQ5VZR2 741 aa3.69□□□□□ -1.82
SMCHD1-203ENST00000577880 CCDC34Q96HJ3 373 aa3.69□□□□□ -1.82
SMCHD1-203ENST00000577880 STAC3Q96MF2 364 aa3.69□□□□□ -1.82
SMCHD1-203ENST00000577880 SLC52A1Q9NWF4 448 aa3.69□□□□□ -1.82
SMCHD1-203ENST00000577880 CCDC144AA2RUR9 1427 aa3.68□□□□□ -1.82
SMCHD1-203ENST00000577880 GOLGA6L4A6NEF3 574 aa3.68□□□□□ -1.82
SMCHD1-203ENST00000577880 POLD1P28340 1107 aa3.68□□□□□ -1.82
SMCHD1-203ENST00000577880 SLC4A10Q6U841 1118 aa3.68□□□□□ -1.82
SMCHD1-203ENST00000577880 WWC1Q8IX03 1113 aa3.68□□□□□ -1.82
SMCHD1-203ENST00000577880 SLC26A8Q96RN1 970 aa3.68□□□□□ -1.82
SMCHD1-203ENST00000577880 PPRC1Q5VV67 1664 aaKnown RBP3.68□□□□□ -1.82
SMCHD1-203ENST00000577880 FHOD3Q2V2M9 1422 aa3.68□□□□□ -1.82
SMCHD1-203ENST00000577880 DDX54Q8TDD1 881 aaKnown RBP3.68□□□□□ -1.82
SMCHD1-203ENST00000577880 BECN1Q14457 450 aa3.68□□□□□ -1.82
SMCHD1-203ENST00000577880 SAMD1Q6SPF0 538 aaPredicted RBP3.68□□□□□ -1.82
SMCHD1-203ENST00000577880 APBB1O00213 710 aa3.68□□□□□ -1.82
SMCHD1-203ENST00000577880 PLEKHO1Q53GL0 409 aaPredicted RBP3.68□□□□□ -1.82
SMCHD1-203ENST00000577880 CADPS2Q86UW7 1296 aa3.68□□□□□ -1.82
SMCHD1-203ENST00000577880 RASSF8Q8NHQ8 419 aa3.68□□□□□ -1.82
SMCHD1-203ENST00000577880 BEGAINQ9BUH8 593 aa3.68□□□□□ -1.82
SMCHD1-203ENST00000577880 PLB1Q6P1J6 1458 aa3.67□□□□□ -1.82
SMCHD1-203ENST00000577880 DHX16O60231 1041 aaKnown RBP3.67□□□□□ -1.82
SMCHD1-203ENST00000577880 EIF2S2P20042 333 aaKnown RBP3.67□□□□□ -1.82
SMCHD1-203ENST00000577880 CGNL1Q0VF96 1302 aa3.67□□□□□ -1.82
SMCHD1-203ENST00000577880 SETD5Q9C0A6 1442 aa3.67□□□□□ -1.82
SMCHD1-203ENST00000577880 KIF6Q6ZMV9 814 aa3.67□□□□□ -1.82
SMCHD1-203ENST00000577880 UPF1Q92900 1129 aaKnown RBP eCLIP3.67□□□□□ -1.82
SMCHD1-203ENST00000577880 SIN3AQ96ST3 1273 aa3.67□□□□□ -1.82
SMCHD1-203ENST00000577880 C9orf78Q9NZ63 289 aaPredicted RBP3.67□□□□□ -1.82
SMCHD1-203ENST00000577880 TIMELESSQ9UNS1 1208 aa3.67□□□□□ -1.82
SMCHD1-203ENST00000577880 KTN1Q86UP2 1357 aaKnown RBP3.67□□□□□ -1.82
SMCHD1-203ENST00000577880 CHAF1AQ13111 956 aaPredicted RBP3.67□□□□□ -1.82
SMCHD1-203ENST00000577880 FAM177BA6PVY3 158 aa3.66□□□□□ -1.82
SMCHD1-203ENST00000577880 NRDCO43847 1150 aa3.66□□□□□ -1.82
SMCHD1-203ENST00000577880 TTLL12Q14166 644 aaPredicted RBP3.66□□□□□ -1.82
SMCHD1-203ENST00000577880 CCDC43Q96MW1 224 aaKnown RBP3.66□□□□□ -1.82
SMCHD1-203ENST00000577880 SPG7Q9UQ90 795 aa3.66□□□□□ -1.82
SMCHD1-203ENST00000577880 R3HCC1Q9Y3T6 440 aaKnown RBP3.66□□□□□ -1.82
SMCHD1-203ENST00000577880 HSP90AB1P08238 724 aaKnown RBP3.66□□□□□ -1.82
SMCHD1-203ENST00000577880 AKAP17AQ02040 695 aaKnown RBP3.66□□□□□ -1.82
SMCHD1-203ENST00000577880 WWC2Q6AWC2 1192 aa3.66□□□□□ -1.82
SMCHD1-203ENST00000577880 PMFBP1Q8TBY8 1022 aa3.66□□□□□ -1.82
SMCHD1-203ENST00000577880 TMOD2Q9NZR1 351 aa3.66□□□□□ -1.82
SMCHD1-203ENST00000577880 LRPPRCP42704 1394 aaKnown RBP3.66□□□□□ -1.82
SMCHD1-203ENST00000577880 SMG6Q86US8 1419 aaKnown RBP3.66□□□□□ -1.82
SMCHD1-203ENST00000577880 MAP3K4Q9Y6R4 1608 aa3.66□□□□□ -1.82
SMCHD1-203ENST00000577880 SYNE3Q6ZMZ3 975 aa3.66□□□□□ -1.82
SMCHD1-203ENST00000577880 FGD5Q6ZNL6 1462 aa3.66□□□□□ -1.82
SMCHD1-203ENST00000577880 RAD54L2Q9Y4B4 1467 aa3.66□□□□□ -1.82
SMCHD1-203ENST00000577880 CD109Q6YHK3 1445 aa3.66□□□□□ -1.82
SMCHD1-203ENST00000577880 MIA2Q96PC5 1412 aa3.66□□□□□ -1.82
SMCHD1-203ENST00000577880 GOLGA6L6A8MZA4 724 aa3.65□□□□□ -1.82
SMCHD1-203ENST00000577880 ZPR1O75312 459 aa3.65□□□□□ -1.82
SMCHD1-203ENST00000577880 CLEC11AQ9Y240 323 aa3.65□□□□□ -1.82
SMCHD1-203ENST00000577880 TOP2AP11388 1531 aaKnown RBP3.65□□□□□ -1.82
SMCHD1-203ENST00000577880 SCAPERQ9BY12 1400 aa3.65□□□□□ -1.82
SMCHD1-203ENST00000577880 MSH6P52701 1360 aa3.65□□□□□ -1.82
SMCHD1-203ENST00000577880 CABP4P57796 275 aa3.65□□□□□ -1.82
SMCHD1-203ENST00000577880 KIAA2012Q0VF49 1180 aa3.65□□□□□ -1.82
SMCHD1-203ENST00000577880 TPRNQ4KMQ1 711 aa3.65□□□□□ -1.82
SMCHD1-203ENST00000577880 L1TD1Q5T7N2 865 aaKnown RBP3.65□□□□□ -1.82
SMCHD1-203ENST00000577880 CHMP4CQ96CF2 233 aa3.65□□□□□ -1.82
SMCHD1-203ENST00000577880 TTC37Q6PGP7 1564 aa3.65□□□□□ -1.82
SMCHD1-203ENST00000577880 EXOC5O00471 708 aa3.65□□□□□ -1.83
SMCHD1-203ENST00000577880 RBM5P52756 815 aaKnown RBP eCLIP3.65□□□□□ -1.83
SMCHD1-203ENST00000577880 IKQ13123 557 aaPredicted RBP3.65□□□□□ -1.83
SMCHD1-203ENST00000577880 RIC3Q7Z5B4 369 aa3.65□□□□□ -1.83
SMCHD1-203ENST00000577880 ZNF692Q9BU19 519 aaPredicted RBP3.65□□□□□ -1.83
SMCHD1-203ENST00000577880 CENPJQ9HC77 1338 aaPredicted RBP3.65□□□□□ -1.83
SMCHD1-203ENST00000577880 YY1P25490 414 aa3.65□□□□□ -1.83
SMCHD1-203ENST00000577880 C1QTNF8P60827 252 aa3.65□□□□□ -1.83
SMCHD1-203ENST00000577880 CEP89Q96ST8 783 aa3.65□□□□□ -1.83
SMCHD1-203ENST00000577880 AKNAQ7Z591 1439 aa3.65□□□□□ -1.83
SMCHD1-203ENST00000577880 ARHGAP5Q13017 1502 aa3.64□□□□□ -1.83
SMCHD1-203ENST00000577880 DIAPH1O60610 1272 aaKnown RBP3.64□□□□□ -1.83
SMCHD1-203ENST00000577880 C8orf37Q96NL8 207 aa3.64□□□□□ -1.83
SMCHD1-203ENST00000577880 RRP7AQ9Y3A4 280 aaKnown RBP3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms