RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 NUP155O75694 1391 aa30.67■■■□□ 2.5
VPS53-210ENST00000571456 TMEM94Q12767 1356 aa30.67■■■□□ 2.5
VPS53-210ENST00000571456 EID1Q9Y6B2 187 aa30.66■■■□□ 2.5
VPS53-210ENST00000571456 RPRD2Q5VT52 1461 aaKnown RBP30.64■■■□□ 2.5
VPS53-210ENST00000571456 EFCAB6Q5THR3 1501 aa30.63■■■□□ 2.49
VPS53-210ENST00000571456 RAB3GAP2Q9H2M9 1393 aa30.59■■■□□ 2.49
VPS53-210ENST00000571456 UPF1Q92900 1129 aaKnown RBP eCLIP30.59■■■□□ 2.49
VPS53-210ENST00000571456 PHLPP1O60346 1717 aa30.58■■■□□ 2.49
VPS53-210ENST00000571456 KCNA6P17658 529 aa30.57■■■□□ 2.48
VPS53-210ENST00000571456 JCADQ9P266 1359 aa30.56■■■□□ 2.48
VPS53-210ENST00000571456 PROSER2Q86WR7 435 aaPredicted RBP30.56■■■□□ 2.48
VPS53-210ENST00000571456 TRIM52Q96A61 297 aa30.56■■■□□ 2.48
VPS53-210ENST00000571456 TMEM2Q9UHN6 1383 aa30.54■■■□□ 2.48
VPS53-210ENST00000571456 PIK3C2BO00750 1634 aa30.52■■■□□ 2.48
VPS53-210ENST00000571456 RBM33Q96EV2 1170 aaKnown RBP30.52■■■□□ 2.48
VPS53-210ENST00000571456 E9PCH4 1651 aa30.5■■■□□ 2.47
VPS53-210ENST00000571456 SLAIN2Q9P270 581 aa30.48■■■□□ 2.47
VPS53-210ENST00000571456 MSH6P52701 1360 aa30.47■■■□□ 2.47
VPS53-210ENST00000571456 SRCAPQ6ZRS2 3230 aa30.47■■■□□ 2.47
VPS53-210ENST00000571456 NKTRP30414 1462 aaKnown RBP30.46■■■□□ 2.47
VPS53-210ENST00000571456 SLC4A1APQ9BWU0 796 aaKnown RBP30.46■■■□□ 2.47
VPS53-210ENST00000571456 STAG3Q9UJ98 1225 aa30.46■■■□□ 2.47
VPS53-210ENST00000571456 NOS1P29475 1434 aa30.46■■■□□ 2.47
VPS53-210ENST00000571456 ZNF772Q68DY9 489 aaPredicted RBP30.45■■■□□ 2.47
VPS53-210ENST00000571456 SLC26A8Q96RN1 970 aa30.45■■■□□ 2.47
VPS53-210ENST00000571456 KDM5AP29375 1690 aaKnown RBP30.45■■■□□ 2.46
VPS53-210ENST00000571456 NWD1Q149M9 1564 aa30.43■■■□□ 2.46
VPS53-210ENST00000571456 COL16A1Q07092 1604 aaPredicted RBP30.43■■■□□ 2.46
VPS53-210ENST00000571456 LRP6O75581 1613 aa30.41■■■□□ 2.46
VPS53-210ENST00000571456 MEX3CQ5U5Q3 659 aaKnown RBP30.4■■■□□ 2.46
VPS53-210ENST00000571456 MPHOSPH9Q99550 1183 aa30.4■■■□□ 2.46
VPS53-210ENST00000571456 SPATA31A6Q5VVP1 1343 aa30.4■■■□□ 2.46
VPS53-210ENST00000571456 SLC52A1Q9NWF4 448 aa30.39■■■□□ 2.46
VPS53-210ENST00000571456 SPHKAPQ2M3C7 1700 aa30.39■■■□□ 2.45
VPS53-210ENST00000571456 RXRBP28702 533 aa30.33■■■□□ 2.45
VPS53-210ENST00000571456 IDI1Q13907 227 aa30.33■■■□□ 2.45
VPS53-210ENST00000571456 TRPM2O94759 1503 aa30.32■■■□□ 2.44
VPS53-210ENST00000571456 SHPRHQ149N8 1683 aa30.3■■■□□ 2.44
VPS53-210ENST00000571456 CHD2O14647 1828 aaKnown RBP30.29■■■□□ 2.44
VPS53-210ENST00000571456 CDK12Q9NYV4 1490 aaPredicted RBP30.29■■■□□ 2.44
VPS53-210ENST00000571456 BCANQ96GW7 911 aa30.28■■■□□ 2.44
VPS53-210ENST00000571456 ADGRB3O60242 1522 aa30.24■■■□□ 2.43
VPS53-210ENST00000571456 AHDC1Q5TGY3 1603 aaPredicted RBP30.23■■■□□ 2.43
VPS53-210ENST00000571456 PCGF6Q9BYE7 350 aa30.23■■■□□ 2.43
VPS53-210ENST00000571456 NCOA3Q9Y6Q9 1424 aa30.2■■■□□ 2.42
VPS53-210ENST00000571456 KIF1BO60333 1816 aa30.18■■■□□ 2.42
VPS53-210ENST00000571456 CCDC144AA2RUR9 1427 aa30.17■■■□□ 2.42
VPS53-210ENST00000571456 C14orf37Q86TY3 774 aa30.16■■■□□ 2.42
VPS53-210ENST00000571456 TMEM131LA2VDJ0 1609 aa30.15■■■□□ 2.42
VPS53-210ENST00000571456 CLTCL1P53675 1640 aa30.15■■■□□ 2.42
VPS53-210ENST00000571456 SIPA1L2Q9P2F8 1722 aaPredicted RBP30.15■■■□□ 2.42
VPS53-210ENST00000571456 PLEKHG1Q9ULL1 1385 aa30.15■■■□□ 2.42
VPS53-210ENST00000571456 NUTM2BA6NNL0 878 aaPredicted RBP30.14■■■□□ 2.42
VPS53-210ENST00000571456 NUTM2EB1AL46 878 aaPredicted RBP30.14■■■□□ 2.42
VPS53-210ENST00000571456 CADPS2Q86UW7 1296 aa30.14■■■□□ 2.42
VPS53-210ENST00000571456 NUTM2AQ8IVF1 878 aaPredicted RBP30.14■■■□□ 2.42
VPS53-210ENST00000571456 AFF2P51816 1311 aa30.13■■■□□ 2.41
VPS53-210ENST00000571456 FOXD1Q16676 465 aa30.12■■■□□ 2.41
VPS53-210ENST00000571456 MYO5BQ9ULV0 1848 aa30.12■■■□□ 2.41
VPS53-210ENST00000571456 ANKRD30BQ9BXX2 1392 aa30.12■■■□□ 2.41
VPS53-210ENST00000571456 DIP2AQ14689 1571 aa30.11■■■□□ 2.41
VPS53-210ENST00000571456 ATF3P18847 181 aa30.11■■■□□ 2.41
VPS53-210ENST00000571456 ZFYVE9O95405 1425 aa30.11■■■□□ 2.41
VPS53-210ENST00000571456 HDGFP51858 240 aaKnown RBP30.1■■■□□ 2.41
VPS53-210ENST00000571456 C19orf44Q9H6X5 657 aa30.1■■■□□ 2.41
VPS53-210ENST00000571456 PPP1R15AO75807 674 aaPredicted RBP30.08■■■□□ 2.41
VPS53-210ENST00000571456 TBX22Q9Y458 520 aa30.08■■■□□ 2.41
VPS53-210ENST00000571456 RGS12O14924 1447 aa30.07■■■□□ 2.4
VPS53-210ENST00000571456 DHX57Q6P158 1386 aaKnown RBP30.05■■■□□ 2.4
VPS53-210ENST00000571456 RIMS2Q9UQ26 1411 aa30.05■■■□□ 2.4
VPS53-210ENST00000571456 CHGAP10645 457 aaKnown RBP30.04■■■□□ 2.4
VPS53-210ENST00000571456 BRINP3Q76B58 766 aa30.04■■■□□ 2.4
VPS53-210ENST00000571456 RBM6P78332 1123 aaKnown RBP30.03■■■□□ 2.4
VPS53-210ENST00000571456 ABCF1Q8NE71 845 aaKnown RBP eCLIP30.02■■■□□ 2.4
VPS53-210ENST00000571456 NUTM2DQ5VT03 806 aaPredicted RBP30.01■■■□□ 2.39
VPS53-210ENST00000571456 QTRT2Q9H974 415 aaKnown RBP30.01■■■□□ 2.39
VPS53-210ENST00000571456 RPGRIP1LQ68CZ1 1315 aa30■■■□□ 2.39
VPS53-210ENST00000571456 SPATA31E1Q6ZUB1 1445 aa29.96■■■□□ 2.39
VPS53-210ENST00000571456 PIK3R4Q99570 1358 aa29.96■■■□□ 2.39
VPS53-210ENST00000571456 C8orf37Q96NL8 207 aa29.96■■■□□ 2.39
VPS53-210ENST00000571456 ZNF326Q5BKZ1 582 aaKnown RBP29.95■■■□□ 2.39
VPS53-210ENST00000571456 ASXL1Q8IXJ9 1541 aa29.95■■■□□ 2.38
VPS53-210ENST00000571456 ADAMTS13Q76LX8 1427 aa29.95■■■□□ 2.38
VPS53-210ENST00000571456 ZRANB1Q9UGI0 708 aa29.93■■■□□ 2.38
VPS53-210ENST00000571456 NHSL1Q5SYE7 1610 aa29.93■■■□□ 2.38
VPS53-210ENST00000571456 ATAD2Q6PL18 1390 aa29.92■■■□□ 2.38
VPS53-210ENST00000571456 LRRC59Q96AG4 307 aaKnown RBP29.92■■■□□ 2.38
VPS53-210ENST00000571456 CLSPNQ9HAW4 1339 aa29.91■■■□□ 2.38
VPS53-210ENST00000571456 NEXMIFQ5QGS0 1516 aa29.91■■■□□ 2.38
VPS53-210ENST00000571456 DCCP43146 1447 aa29.9■■■□□ 2.38
VPS53-210ENST00000571456 NGLY1Q96IV0 654 aa29.9■■■□□ 2.38
VPS53-210ENST00000571456 STAC3Q96MF2 364 aa29.89■■■□□ 2.38
VPS53-210ENST00000571456 PPLO60437 1756 aa29.89■■■□□ 2.38
VPS53-210ENST00000571456 VGFO15240 615 aaPredicted RBP29.88■■■□□ 2.37
VPS53-210ENST00000571456 EP400Q96L91 3159 aa29.87■■■□□ 2.37
VPS53-210ENST00000571456 AMOTL2Q9Y2J4 779 aa29.87■■■□□ 2.37
VPS53-210ENST00000571456 IFT172Q9UG01 1749 aa29.86■■■□□ 2.37
VPS53-210ENST00000571456 PNPLA6Q8IY17 1366 aa29.84■■■□□ 2.37
VPS53-210ENST00000571456 SETBP1Q9Y6X0 1596 aa29.83■■■□□ 2.37
VPS53-210ENST00000571456 MST1RQ04912 1400 aa29.83■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms