RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 RIMS2Q9UQ26 1411 aa13.64□□□□□ -0.23
VPS35-211ENST00000569950 MED14O60244 1454 aa13.63□□□□□ -0.23
VPS35-211ENST00000569950 IQGAP1P46940 1657 aa13.63□□□□□ -0.23
VPS35-211ENST00000569950 NRXN1Q9ULB1 1477 aa13.62□□□□□ -0.23
VPS35-211ENST00000569950 CLSPNQ9HAW4 1339 aa13.62□□□□□ -0.23
VPS35-211ENST00000569950 SCAF11Q99590 1463 aaKnown RBP13.61□□□□□ -0.23
VPS35-211ENST00000569950 THEMISQ8N1K5 641 aaPredicted RBP13.61□□□□□ -0.23
VPS35-211ENST00000569950 MYOM2P54296 1465 aa13.6□□□□□ -0.23
VPS35-211ENST00000569950 SETBP1Q9Y6X0 1596 aa13.59□□□□□ -0.23
VPS35-211ENST00000569950 ADAMTS13Q76LX8 1427 aa13.58□□□□□ -0.24
VPS35-211ENST00000569950 CHGAP10645 457 aaKnown RBP13.58□□□□□ -0.24
VPS35-211ENST00000569950 NCKAP5LQ9HCH0 1330 aa13.58□□□□□ -0.24
VPS35-211ENST00000569950 RGL3Q3MIN7 710 aa13.57□□□□□ -0.24
VPS35-211ENST00000569950 ASXL1Q8IXJ9 1541 aa13.57□□□□□ -0.24
VPS35-211ENST00000569950 RPGRIP1LQ68CZ1 1315 aa13.57□□□□□ -0.24
VPS35-211ENST00000569950 PLEKHG1Q9ULL1 1385 aa13.57□□□□□ -0.24
VPS35-211ENST00000569950 PIK3C2GO75747 1445 aa13.56□□□□□ -0.24
VPS35-211ENST00000569950 STRCP1A6NGW2 1772 aa13.56□□□□□ -0.24
VPS35-211ENST00000569950 NUTM2DQ5VT03 806 aaPredicted RBP13.56□□□□□ -0.24
VPS35-211ENST00000569950 ADGRF5Q8IZF2 1346 aa13.56□□□□□ -0.24
VPS35-211ENST00000569950 NPHP4O75161 1426 aaPredicted RBP13.56□□□□□ -0.24
VPS35-211ENST00000569950 TXNDC2Q86VQ3 553 aa13.55□□□□□ -0.24
VPS35-211ENST00000569950 CCER1Q8TC90 406 aaPredicted RBP13.55□□□□□ -0.24
VPS35-211ENST00000569950 L3MBTL2Q969R5 705 aa13.55□□□□□ -0.24
VPS35-211ENST00000569950 STAG3Q9UJ98 1225 aa13.55□□□□□ -0.24
VPS35-211ENST00000569950 NEUROD1Q13562 356 aa13.54□□□□□ -0.24
VPS35-211ENST00000569950 ALKQ9UM73 1620 aa13.53□□□□□ -0.24
VPS35-211ENST00000569950 ANKLE2Q86XL3 938 aa13.53□□□□□ -0.24
VPS35-211ENST00000569950 CHD2O14647 1828 aaKnown RBP13.53□□□□□ -0.24
VPS35-211ENST00000569950 ZNF326Q5BKZ1 582 aaKnown RBP13.52□□□□□ -0.25
VPS35-211ENST00000569950 PRAG1Q86YV5 1406 aa13.52□□□□□ -0.25
VPS35-211ENST00000569950 ADGRB1O14514 1584 aa13.52□□□□□ -0.25
VPS35-211ENST00000569950 DIP2AQ14689 1571 aa13.52□□□□□ -0.25
VPS35-211ENST00000569950 TRPM1Q7Z4N2 1603 aa13.52□□□□□ -0.25
VPS35-211ENST00000569950 KIAA1210Q9ULL0 1709 aa13.52□□□□□ -0.25
VPS35-211ENST00000569950 LAMC1P11047 1609 aa13.51□□□□□ -0.25
VPS35-211ENST00000569950 XRN1Q8IZH2 1706 aaKnown RBP13.5□□□□□ -0.25
VPS35-211ENST00000569950 NWD1Q149M9 1564 aa13.5□□□□□ -0.25
VPS35-211ENST00000569950 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.5□□□□□ -0.25
VPS35-211ENST00000569950 DCAF11Q8TEB1 546 aa13.5□□□□□ -0.25
VPS35-211ENST00000569950 PTPRUQ92729 1446 aa13.49□□□□□ -0.25
VPS35-211ENST00000569950 NBPF8Q3BBV2 869 aa13.49□□□□□ -0.25
VPS35-211ENST00000569950 METP08581 1390 aa13.48□□□□□ -0.25
VPS35-211ENST00000569950 VGFO15240 615 aaPredicted RBP13.48□□□□□ -0.25
VPS35-211ENST00000569950 EID1Q9Y6B2 187 aa13.48□□□□□ -0.25
VPS35-211ENST00000569950 LTBP4Q8N2S1 1624 aa13.48□□□□□ -0.25
VPS35-211ENST00000569950 XIRP1Q702N8 1843 aaKnown RBP13.47□□□□□ -0.25
VPS35-211ENST00000569950 TONSLQ96HA7 1378 aa13.46□□□□□ -0.25
VPS35-211ENST00000569950 SLC26A8Q96RN1 970 aa13.46□□□□□ -0.25
VPS35-211ENST00000569950 C14orf93Q9H972 538 aaKnown RBP13.46□□□□□ -0.25
VPS35-211ENST00000569950 KDM2AQ9Y2K7 1162 aa13.46□□□□□ -0.25
VPS35-211ENST00000569950 KNDC1Q76NI1 1749 aa13.46□□□□□ -0.25
VPS35-211ENST00000569950 STAC3Q96MF2 364 aa13.45□□□□□ -0.26
VPS35-211ENST00000569950 TIMELESSQ9UNS1 1208 aa13.45□□□□□ -0.26
VPS35-211ENST00000569950 TBX22Q9Y458 520 aa13.45□□□□□ -0.26
VPS35-211ENST00000569950 PPP1R15AO75807 674 aaPredicted RBP13.44□□□□□ -0.26
VPS35-211ENST00000569950 HDGFP51858 240 aaKnown RBP13.44□□□□□ -0.26
VPS35-211ENST00000569950 CFAP70Q5T0N1 1121 aa13.44□□□□□ -0.26
VPS35-211ENST00000569950 RALGAPBQ86X10 1494 aa13.43□□□□□ -0.26
VPS35-211ENST00000569950 ARHGEF28Q8N1W1 1705 aaKnown RBP13.42□□□□□ -0.26
VPS35-211ENST00000569950 TECPR2O15040 1411 aa13.42□□□□□ -0.26
VPS35-211ENST00000569950 NBPF1Q3BBV0 1214 aa13.42□□□□□ -0.26
VPS35-211ENST00000569950 CPS1P31327 1500 aa13.42□□□□□ -0.26
VPS35-211ENST00000569950 GPRASP1Q5JY77 1395 aa13.42□□□□□ -0.26
VPS35-211ENST00000569950 PIK3R4Q99570 1358 aa13.42□□□□□ -0.26
VPS35-211ENST00000569950 ZNF335Q9H4Z2 1342 aaPredicted RBP13.41□□□□□ -0.26
VPS35-211ENST00000569950 DMRT2Q9Y5R5 561 aa13.4□□□□□ -0.26
VPS35-211ENST00000569950 YTHDC2Q9H6S0 1430 aaKnown RBP13.39□□□□□ -0.27
VPS35-211ENST00000569950 MSH5O43196 834 aa13.39□□□□□ -0.27
VPS35-211ENST00000569950 TMEM132EQ6IEE7 984 aa13.39□□□□□ -0.27
VPS35-211ENST00000569950 PIAS4Q8N2W9 510 aaPredicted RBP13.39□□□□□ -0.27
VPS35-211ENST00000569950 LRPPRCP42704 1394 aaKnown RBP13.39□□□□□ -0.27
VPS35-211ENST00000569950 NKTRP30414 1462 aaKnown RBP13.39□□□□□ -0.27
VPS35-211ENST00000569950 DLC1Q96QB1 1528 aa13.39□□□□□ -0.27
VPS35-211ENST00000569950 ROBO2Q9HCK4 1378 aa13.38□□□□□ -0.27
VPS35-211ENST00000569950 POTEDQ86YR6 584 aa13.38□□□□□ -0.27
VPS35-211ENST00000569950 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.38□□□□□ -0.27
VPS35-211ENST00000569950 LRRC7Q96NW7 1537 aa13.38□□□□□ -0.27
VPS35-211ENST00000569950 PTCH1Q13635 1447 aa13.38□□□□□ -0.27
VPS35-211ENST00000569950 ABCC11Q96J66 1382 aa13.37□□□□□ -0.27
VPS35-211ENST00000569950 NALCNQ8IZF0 1738 aa13.37□□□□□ -0.27
VPS35-211ENST00000569950 KCNA6P17658 529 aa13.37□□□□□ -0.27
VPS35-211ENST00000569950 ADRA2BP18089 450 aa13.37□□□□□ -0.27
VPS35-211ENST00000569950 AMOTL2Q9Y2J4 779 aa13.35□□□□□ -0.27
VPS35-211ENST00000569950 PLEKHH1Q9ULM0 1364 aa13.34□□□□□ -0.27
VPS35-211ENST00000569950 BCANQ96GW7 911 aa13.34□□□□□ -0.27
VPS35-211ENST00000569950 FAM135BQ49AJ0 1406 aa13.33□□□□□ -0.28
VPS35-211ENST00000569950 ROCK2O75116 1388 aaKnown RBP13.32□□□□□ -0.28
VPS35-211ENST00000569950 QRICH2Q9H0J4 1663 aa13.31□□□□□ -0.28
VPS35-211ENST00000569950 ADGRB2O60241 1585 aa13.31□□□□□ -0.28
VPS35-211ENST00000569950 TMEM94Q12767 1356 aa13.31□□□□□ -0.28
VPS35-211ENST00000569950 SIRT1Q96EB6 747 aa13.3□□□□□ -0.28
VPS35-211ENST00000569950 STK26Q9P289 416 aa13.3□□□□□ -0.28
VPS35-211ENST00000569950 WAPLQ7Z5K2 1190 aa13.29□□□□□ -0.28
VPS35-211ENST00000569950 RBM33Q96EV2 1170 aaKnown RBP13.29□□□□□ -0.28
VPS35-211ENST00000569950 TRAK1Q9UPV9 953 aa13.28□□□□□ -0.28
VPS35-211ENST00000569950 ADGRL3Q9HAR2 1447 aa13.28□□□□□ -0.28
VPS35-211ENST00000569950 FMN2Q9NZ56 1722 aa13.27□□□□□ -0.28
VPS35-211ENST00000569950 NCOA3Q9Y6Q9 1424 aa13.27□□□□□ -0.29
VPS35-211ENST00000569950 TULP4Q9NRJ4 1543 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms