RNA–Protein interactions for RNA: ENST00000568676.5

HERPUD1-215, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 2

Gene HERPUD1, Length 571 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-215ENST00000568676 MSH6P52701 1360 aa24.43■■□□□ 1.5
HERPUD1-215ENST00000568676 RGS17Q9UGC6 210 aaPredicted RBP24.43■■□□□ 1.5
HERPUD1-215ENST00000568676 ROBO1Q9Y6N7 1651 aa24.43■■□□□ 1.5
HERPUD1-215ENST00000568676 PLEKHG1Q9ULL1 1385 aa24.42■■□□□ 1.5
HERPUD1-215ENST00000568676 BCANQ96GW7 911 aa24.42■■□□□ 1.5
HERPUD1-215ENST00000568676 FAM50AQ14320 339 aaKnown RBP24.41■■□□□ 1.5
HERPUD1-215ENST00000568676 ZFYVE9O95405 1425 aa24.41■■□□□ 1.5
HERPUD1-215ENST00000568676 NCOA3Q9Y6Q9 1424 aa24.38■■□□□ 1.49
HERPUD1-215ENST00000568676 PPP1R15AO75807 674 aaPredicted RBP24.37■■□□□ 1.49
HERPUD1-215ENST00000568676 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.37■■□□□ 1.49
HERPUD1-215ENST00000568676 RIMS2Q9UQ26 1411 aa24.36■■□□□ 1.49
HERPUD1-215ENST00000568676 SLAIN2Q9P270 581 aa24.36■■□□□ 1.49
HERPUD1-215ENST00000568676 TBX22Q9Y458 520 aa24.36■■□□□ 1.49
HERPUD1-215ENST00000568676 GCC2Q8IWJ2 1684 aa24.36■■□□□ 1.49
HERPUD1-215ENST00000568676 TMEM131LA2VDJ0 1609 aa24.35■■□□□ 1.49
HERPUD1-215ENST00000568676 CHD2O14647 1828 aaKnown RBP24.34■■□□□ 1.49
HERPUD1-215ENST00000568676 RBM33Q96EV2 1170 aaKnown RBP24.34■■□□□ 1.49
HERPUD1-215ENST00000568676 UNC13BO14795 1591 aa24.33■■□□□ 1.49
HERPUD1-215ENST00000568676 JCADQ9P266 1359 aa24.31■■□□□ 1.48
HERPUD1-215ENST00000568676 DIP2AQ14689 1571 aa24.31■■□□□ 1.48
HERPUD1-215ENST00000568676 ROCK1Q13464 1354 aa24.3■■□□□ 1.48
HERPUD1-215ENST00000568676 PIK3R4Q99570 1358 aa24.3■■□□□ 1.48
HERPUD1-215ENST00000568676 MYO5BQ9ULV0 1848 aa24.29■■□□□ 1.48
HERPUD1-215ENST00000568676 PHLPP1O60346 1717 aa24.29■■□□□ 1.48
HERPUD1-215ENST00000568676 POTEAQ6S8J7 498 aa24.28■■□□□ 1.48
HERPUD1-215ENST00000568676 CHGAP10645 457 aaKnown RBP24.25■■□□□ 1.47
HERPUD1-215ENST00000568676 CADPS2Q86UW7 1296 aa24.25■■□□□ 1.47
HERPUD1-215ENST00000568676 IQGAP3Q86VI3 1631 aa24.24■■□□□ 1.47
HERPUD1-215ENST00000568676 E9PCH4 1651 aa24.24■■□□□ 1.47
HERPUD1-215ENST00000568676 ADAMTS13Q76LX8 1427 aa24.24■■□□□ 1.47
HERPUD1-215ENST00000568676 C14orf37Q86TY3 774 aa24.23■■□□□ 1.47
HERPUD1-215ENST00000568676 C19orf44Q9H6X5 657 aa24.23■■□□□ 1.47
HERPUD1-215ENST00000568676 SPATA31A6Q5VVP1 1343 aa24.22■■□□□ 1.47
HERPUD1-215ENST00000568676 COL16A1Q07092 1604 aaPredicted RBP24.21■■□□□ 1.47
HERPUD1-215ENST00000568676 ATF3P18847 181 aa24.2■■□□□ 1.46
HERPUD1-215ENST00000568676 TRPM2O94759 1503 aa24.2■■□□□ 1.46
HERPUD1-215ENST00000568676 NUP155O75694 1391 aa24.17■■□□□ 1.46
HERPUD1-215ENST00000568676 AHDC1Q5TGY3 1603 aaPredicted RBP24.17■■□□□ 1.46
HERPUD1-215ENST00000568676 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.16■■□□□ 1.46
HERPUD1-215ENST00000568676 DCCP43146 1447 aa24.15■■□□□ 1.46
HERPUD1-215ENST00000568676 NUTM2DQ5VT03 806 aaPredicted RBP24.13■■□□□ 1.45
HERPUD1-215ENST00000568676 ZNF772Q68DY9 489 aaPredicted RBP24.13■■□□□ 1.45
HERPUD1-215ENST00000568676 AMOTL2Q9Y2J4 779 aa24.13■■□□□ 1.45
HERPUD1-215ENST00000568676 SHPRHQ149N8 1683 aa24.11■■□□□ 1.45
HERPUD1-215ENST00000568676 MEX3CQ5U5Q3 659 aaKnown RBP24.1■■□□□ 1.45
HERPUD1-215ENST00000568676 SETBP1Q9Y6X0 1596 aa24.09■■□□□ 1.45
HERPUD1-215ENST00000568676 LRP6O75581 1613 aa24.09■■□□□ 1.45
HERPUD1-215ENST00000568676 PTPRUQ92729 1446 aa24.08■■□□□ 1.44
HERPUD1-215ENST00000568676 BRINP3Q76B58 766 aa24.06■■□□□ 1.44
HERPUD1-215ENST00000568676 XRN1Q8IZH2 1706 aaKnown RBP24.06■■□□□ 1.44
HERPUD1-215ENST00000568676 SPHKAPQ2M3C7 1700 aa24.05■■□□□ 1.44
HERPUD1-215ENST00000568676 NRXN3Q9Y4C0 1643 aa24.03■■□□□ 1.44
HERPUD1-215ENST00000568676 SETD1AO15047 1707 aaKnown RBP24.02■■□□□ 1.44
HERPUD1-215ENST00000568676 ITGAEP38570 1179 aa24.02■■□□□ 1.44
HERPUD1-215ENST00000568676 SETD5Q9C0A6 1442 aa24.01■■□□□ 1.43
HERPUD1-215ENST00000568676 ASXL1Q8IXJ9 1541 aa24.01■■□□□ 1.43
HERPUD1-215ENST00000568676 ZNF326Q5BKZ1 582 aaKnown RBP24.01■■□□□ 1.43
HERPUD1-215ENST00000568676 MST1RQ04912 1400 aa24■■□□□ 1.43
HERPUD1-215ENST00000568676 LRRC59Q96AG4 307 aaKnown RBP23.98■■□□□ 1.43
HERPUD1-215ENST00000568676 CDK12Q9NYV4 1490 aaPredicted RBP23.98■■□□□ 1.43
HERPUD1-215ENST00000568676 METP08581 1390 aa23.97■■□□□ 1.43
HERPUD1-215ENST00000568676 RXRBP28702 533 aa23.97■■□□□ 1.43
HERPUD1-215ENST00000568676 ADGRL3Q9HAR2 1447 aa23.97■■□□□ 1.43
HERPUD1-215ENST00000568676 NHSL1Q5SYE7 1610 aa23.96■■□□□ 1.43
HERPUD1-215ENST00000568676 NEXMIFQ5QGS0 1516 aa23.94■■□□□ 1.42
HERPUD1-215ENST00000568676 NUTM2BA6NNL0 878 aaPredicted RBP23.93■■□□□ 1.42
HERPUD1-215ENST00000568676 NUTM2EB1AL46 878 aaPredicted RBP23.93■■□□□ 1.42
HERPUD1-215ENST00000568676 NUTM2AQ8IVF1 878 aaPredicted RBP23.93■■□□□ 1.42
HERPUD1-215ENST00000568676 UPF1Q92900 1129 aaKnown RBP eCLIP23.93■■□□□ 1.42
HERPUD1-215ENST00000568676 TRIM52Q96A61 297 aa23.92■■□□□ 1.42
HERPUD1-215ENST00000568676 CLTCL1P53675 1640 aa23.92■■□□□ 1.42
HERPUD1-215ENST00000568676 AFF2P51816 1311 aa23.89■■□□□ 1.42
HERPUD1-215ENST00000568676 VGFO15240 615 aaPredicted RBP23.89■■□□□ 1.41
HERPUD1-215ENST00000568676 PTCH1Q13635 1447 aa23.89■■□□□ 1.41
HERPUD1-215ENST00000568676 KIF1BO60333 1816 aa23.88■■□□□ 1.41
HERPUD1-215ENST00000568676 PNPLA6Q8IY17 1366 aa23.87■■□□□ 1.41
HERPUD1-215ENST00000568676 NALCNQ8IZF0 1738 aa23.87■■□□□ 1.41
HERPUD1-215ENST00000568676 PRAG1Q86YV5 1406 aa23.86■■□□□ 1.41
HERPUD1-215ENST00000568676 RRBP1Q9P2E9 1410 aaKnown RBP23.86■■□□□ 1.41
HERPUD1-215ENST00000568676 RPGRIP1LQ68CZ1 1315 aa23.85■■□□□ 1.41
HERPUD1-215ENST00000568676 NAIPQ13075 1403 aa23.85■■□□□ 1.41
HERPUD1-215ENST00000568676 C1orf167Q5SNV9 1468 aa23.84■■□□□ 1.41
HERPUD1-215ENST00000568676 LAMC1P11047 1609 aa23.84■■□□□ 1.41
HERPUD1-215ENST00000568676 RBM6P78332 1123 aaKnown RBP23.82■■□□□ 1.4
HERPUD1-215ENST00000568676 C8orf37Q96NL8 207 aa23.82■■□□□ 1.4
HERPUD1-215ENST00000568676 PPARGC1BQ86YN6 1023 aaKnown RBP23.8■■□□□ 1.4
HERPUD1-215ENST00000568676 QTRT2Q9H974 415 aaKnown RBP23.8■■□□□ 1.4
HERPUD1-215ENST00000568676 HFM1A2PYH4 1435 aa23.79■■□□□ 1.4
HERPUD1-215ENST00000568676 SOS2Q07890 1332 aaPredicted RBP23.79■■□□□ 1.4
HERPUD1-215ENST00000568676 DDX17Q92841 729 aaKnown RBP23.78■■□□□ 1.4
HERPUD1-215ENST00000568676 NGLY1Q96IV0 654 aa23.78■■□□□ 1.4
HERPUD1-215ENST00000568676 ROBO2Q9HCK4 1378 aa23.78■■□□□ 1.4
HERPUD1-215ENST00000568676 RGS12O14924 1447 aa23.76■■□□□ 1.39
HERPUD1-215ENST00000568676 SLC4A1APQ9BWU0 796 aaKnown RBP23.73■■□□□ 1.39
HERPUD1-215ENST00000568676 ORAI2Q96SN7 254 aa23.72■■□□□ 1.39
HERPUD1-215ENST00000568676 ADAMTS2O95450 1211 aa23.71■■□□□ 1.39
HERPUD1-215ENST00000568676 PPLO60437 1756 aa23.7■■□□□ 1.38
HERPUD1-215ENST00000568676 NPHP3Q7Z494 1330 aa23.69■■□□□ 1.38
HERPUD1-215ENST00000568676 TRPC5Q9UL62 973 aaPredicted RBP23.69■■□□□ 1.38
HERPUD1-215ENST00000568676 COL22A1Q8NFW1 1626 aaPredicted RBP23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms