RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 KIF7Q2M1P5 1343 aa25.24■■□□□ 1.63
COMMD4-208ENST00000563220 NRXN1Q9ULB1 1477 aa25.22■■□□□ 1.63
COMMD4-208ENST00000563220 IFT172Q9UG01 1749 aa25.22■■□□□ 1.63
COMMD4-208ENST00000563220 CFAP70Q5T0N1 1121 aa25.21■■□□□ 1.63
COMMD4-208ENST00000563220 LAMC1P11047 1609 aa25.2■■□□□ 1.63
COMMD4-208ENST00000563220 SPATA31D1Q6ZQQ2 1576 aa25.2■■□□□ 1.62
COMMD4-208ENST00000563220 NUTM2DQ5VT03 806 aaPredicted RBP25.17■■□□□ 1.62
COMMD4-208ENST00000563220 PPLO60437 1756 aa25.16■■□□□ 1.62
COMMD4-208ENST00000563220 TMEM131LA2VDJ0 1609 aa25.15■■□□□ 1.62
COMMD4-208ENST00000563220 NEXMIFQ5QGS0 1516 aa25.14■■□□□ 1.62
COMMD4-208ENST00000563220 VGFO15240 615 aaPredicted RBP25.14■■□□□ 1.61
COMMD4-208ENST00000563220 PIK3C2GO75747 1445 aa25.13■■□□□ 1.61
COMMD4-208ENST00000563220 KIAA1210Q9ULL0 1709 aa25.12■■□□□ 1.61
COMMD4-208ENST00000563220 TESK2Q96S53 571 aa25.12■■□□□ 1.61
COMMD4-208ENST00000563220 C14orf93Q9H972 538 aaKnown RBP25.12■■□□□ 1.61
COMMD4-208ENST00000563220 STAG3Q9UJ98 1225 aa25.11■■□□□ 1.61
COMMD4-208ENST00000563220 SCAF11Q99590 1463 aaKnown RBP25.1■■□□□ 1.61
COMMD4-208ENST00000563220 POLR3GLQ9BT43 218 aa25.09■■□□□ 1.61
COMMD4-208ENST00000563220 POLR1AO95602 1720 aaPredicted RBP25.08■■□□□ 1.61
COMMD4-208ENST00000563220 ZFYVE9O95405 1425 aa25.08■■□□□ 1.61
COMMD4-208ENST00000563220 CEBPAP49715 358 aaPredicted RBP25.08■■□□□ 1.61
COMMD4-208ENST00000563220 TNRQ92752 1358 aa25.07■■□□□ 1.6
COMMD4-208ENST00000563220 MYO5BQ9ULV0 1848 aa25.06■■□□□ 1.6
COMMD4-208ENST00000563220 A2ML1A8K2U0 1454 aa25.06■■□□□ 1.6
COMMD4-208ENST00000563220 ANP32CO43423 234 aa25.06■■□□□ 1.6
COMMD4-208ENST00000563220 IQGAP1P46940 1657 aa25.05■■□□□ 1.6
COMMD4-208ENST00000563220 TMEM132EQ6IEE7 984 aa25.02■■□□□ 1.6
COMMD4-208ENST00000563220 DISP3Q9P2K9 1392 aa25.01■■□□□ 1.59
COMMD4-208ENST00000563220 SETBP1Q9Y6X0 1596 aa25.01■■□□□ 1.59
COMMD4-208ENST00000563220 ADGRB1O14514 1584 aa25■■□□□ 1.59
COMMD4-208ENST00000563220 TMF1P82094 1093 aa25■■□□□ 1.59
COMMD4-208ENST00000563220 SENP3Q9H4L4 574 aaPredicted RBP24.99■■□□□ 1.59
COMMD4-208ENST00000563220 EIF3AQ14152 1382 aaKnown RBP24.99■■□□□ 1.59
COMMD4-208ENST00000563220 RIMS2Q9UQ26 1411 aa24.98■■□□□ 1.59
COMMD4-208ENST00000563220 PLPPR3Q6T4P5 718 aa24.97■■□□□ 1.59
COMMD4-208ENST00000563220 TRAK1Q9UPV9 953 aa24.96■■□□□ 1.59
COMMD4-208ENST00000563220 FER1L4A9Z1Z3 1794 aa24.95■■□□□ 1.59
COMMD4-208ENST00000563220 C3P01024 1663 aa24.94■■□□□ 1.58
COMMD4-208ENST00000563220 CCER2I3L3R5 266 aa24.91■■□□□ 1.58
COMMD4-208ENST00000563220 YTHDC1Q96MU7 727 aaKnown RBP24.91■■□□□ 1.58
COMMD4-208ENST00000563220 NLRP1Q9C000 1473 aa24.9■■□□□ 1.58
COMMD4-208ENST00000563220 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.9■■□□□ 1.58
COMMD4-208ENST00000563220 CENPJQ9HC77 1338 aaPredicted RBP24.89■■□□□ 1.58
COMMD4-208ENST00000563220 PRKRIP1Q9H875 184 aaPredicted RBP24.88■■□□□ 1.57
COMMD4-208ENST00000563220 ASXL1Q8IXJ9 1541 aa24.88■■□□□ 1.57
COMMD4-208ENST00000563220 TMEM2Q9UHN6 1383 aa24.88■■□□□ 1.57
COMMD4-208ENST00000563220 ALKQ9UM73 1620 aa24.86■■□□□ 1.57
COMMD4-208ENST00000563220 HDGFP51858 240 aaKnown RBP24.86■■□□□ 1.57
COMMD4-208ENST00000563220 SLC24A1O60721 1099 aa24.85■■□□□ 1.57
COMMD4-208ENST00000563220 UBR1Q8IWV7 1749 aa24.85■■□□□ 1.57
COMMD4-208ENST00000563220 CDCA8Q53HL2 280 aa24.85■■□□□ 1.57
COMMD4-208ENST00000563220 MYO3AQ8NEV4 1616 aa24.85■■□□□ 1.57
COMMD4-208ENST00000563220 KDM5AP29375 1690 aaKnown RBP24.85■■□□□ 1.57
COMMD4-208ENST00000563220 SBNO2Q9Y2G9 1366 aa24.84■■□□□ 1.57
COMMD4-208ENST00000563220 STK26Q9P289 416 aa24.84■■□□□ 1.57
COMMD4-208ENST00000563220 PTPRMP28827 1452 aa24.82■■□□□ 1.56
COMMD4-208ENST00000563220 ADAMTSL3P82987 1691 aa24.81■■□□□ 1.56
COMMD4-208ENST00000563220 YTHDC2Q9H6S0 1430 aaKnown RBP24.81■■□□□ 1.56
COMMD4-208ENST00000563220 RIMS1Q86UR5 1692 aaKnown RBP24.8■■□□□ 1.56
COMMD4-208ENST00000563220 PER1O15534 1290 aaPredicted RBP24.8■■□□□ 1.56
COMMD4-208ENST00000563220 LTKP29376 864 aa24.8■■□□□ 1.56
COMMD4-208ENST00000563220 PANK3Q9H999 370 aa24.8■■□□□ 1.56
COMMD4-208ENST00000563220 CNGB1Q14028 1251 aaPredicted RBP24.77■■□□□ 1.56
COMMD4-208ENST00000563220 NRXN3Q9Y4C0 1643 aa24.76■■□□□ 1.55
COMMD4-208ENST00000563220 SCAF1Q9H7N4 1312 aaKnown RBP24.76■■□□□ 1.55
COMMD4-208ENST00000563220 TXNDC2Q86VQ3 553 aa24.76■■□□□ 1.55
COMMD4-208ENST00000563220 ARHGEF28Q8N1W1 1705 aaKnown RBP24.75■■□□□ 1.55
COMMD4-208ENST00000563220 THEMISQ8N1K5 641 aaPredicted RBP24.75■■□□□ 1.55
COMMD4-208ENST00000563220 SAFB2Q14151 953 aaKnown RBP eCLIP24.74■■□□□ 1.55
COMMD4-208ENST00000563220 METP08581 1390 aa24.74■■□□□ 1.55
COMMD4-208ENST00000563220 CCDC184Q52MB2 194 aa24.73■■□□□ 1.55
COMMD4-208ENST00000563220 BCANQ96GW7 911 aa24.73■■□□□ 1.55
COMMD4-208ENST00000563220 PRAM1Q96QH2 718 aa24.73■■□□□ 1.55
COMMD4-208ENST00000563220 QRICH2Q9H0J4 1663 aa24.73■■□□□ 1.55
COMMD4-208ENST00000563220 ARHGAP23Q9P227 1491 aa24.73■■□□□ 1.55
COMMD4-208ENST00000563220 LRPPRCP42704 1394 aaKnown RBP24.72■■□□□ 1.55
COMMD4-208ENST00000563220 SETD1AO15047 1707 aaKnown RBP24.72■■□□□ 1.55
COMMD4-208ENST00000563220 SLIT1O75093 1534 aa24.72■■□□□ 1.55
COMMD4-208ENST00000563220 EID1Q9Y6B2 187 aa24.72■■□□□ 1.55
COMMD4-208ENST00000563220 CENPBP07199 599 aaPredicted RBP24.71■■□□□ 1.55
COMMD4-208ENST00000563220 PLEKHG1Q9ULL1 1385 aa24.71■■□□□ 1.55
COMMD4-208ENST00000563220 POGKQ9P215 609 aa24.7■■□□□ 1.54
COMMD4-208ENST00000563220 ADAMTS13Q76LX8 1427 aa24.7■■□□□ 1.54
COMMD4-208ENST00000563220 ABCC11Q96J66 1382 aa24.69■■□□□ 1.54
COMMD4-208ENST00000563220 EVC2Q86UK5 1308 aa24.68■■□□□ 1.54
COMMD4-208ENST00000563220 WAPLQ7Z5K2 1190 aa24.66■■□□□ 1.54
COMMD4-208ENST00000563220 CEP170BQ9Y4F5 1589 aaPredicted RBP24.66■■□□□ 1.54
COMMD4-208ENST00000563220 MYOM1P52179 1685 aa24.65■■□□□ 1.54
COMMD4-208ENST00000563220 DLC1Q96QB1 1528 aa24.65■■□□□ 1.54
COMMD4-208ENST00000563220 TULP4Q9NRJ4 1543 aa24.65■■□□□ 1.54
COMMD4-208ENST00000563220 RALBP1Q15311 655 aa24.65■■□□□ 1.54
COMMD4-208ENST00000563220 PUS7Q96PZ0 661 aaKnown RBP24.65■■□□□ 1.54
COMMD4-208ENST00000563220 MINK1Q8N4C8 1332 aaPredicted RBP24.65■■□□□ 1.54
COMMD4-208ENST00000563220 SLC26A8Q96RN1 970 aa24.63■■□□□ 1.53
COMMD4-208ENST00000563220 MRS2Q9HD23 443 aa24.63■■□□□ 1.53
COMMD4-208ENST00000563220 PLEKHH1Q9ULM0 1364 aa24.63■■□□□ 1.53
COMMD4-208ENST00000563220 MED14O60244 1454 aa24.62■■□□□ 1.53
COMMD4-208ENST00000563220 KTN1Q86UP2 1357 aaKnown RBP24.62■■□□□ 1.53
COMMD4-208ENST00000563220 CABP2Q9NPB3 220 aa24.62■■□□□ 1.53
COMMD4-208ENST00000563220 KNSTRNQ9Y448 316 aa24.62■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms