RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 PROSER2Q86WR7 435 aaPredicted RBP25.52■■□□□ 1.68
CLN3-208ENST00000561505 FAM50AQ14320 339 aaKnown RBP25.51■■□□□ 1.67
CLN3-208ENST00000561505 TMEM131LA2VDJ0 1609 aa25.5■■□□□ 1.67
CLN3-208ENST00000561505 UNC13BO14795 1591 aa25.5■■□□□ 1.67
CLN3-208ENST00000561505 ROCK1Q13464 1354 aa25.49■■□□□ 1.67
CLN3-208ENST00000561505 HDGFP51858 240 aaKnown RBP25.47■■□□□ 1.67
CLN3-208ENST00000561505 TBX22Q9Y458 520 aa25.47■■□□□ 1.67
CLN3-208ENST00000561505 GCC2Q8IWJ2 1684 aa25.47■■□□□ 1.67
CLN3-208ENST00000561505 RIMS2Q9UQ26 1411 aa25.46■■□□□ 1.67
CLN3-208ENST00000561505 CHD2O14647 1828 aaKnown RBP25.46■■□□□ 1.67
CLN3-208ENST00000561505 NCOA3Q9Y6Q9 1424 aa25.46■■□□□ 1.67
CLN3-208ENST00000561505 SENP3Q9H4L4 574 aaPredicted RBP25.45■■□□□ 1.66
CLN3-208ENST00000561505 ROBO1Q9Y6N7 1651 aa25.45■■□□□ 1.66
CLN3-208ENST00000561505 MYO5BQ9ULV0 1848 aa25.42■■□□□ 1.66
CLN3-208ENST00000561505 RBM33Q96EV2 1170 aaKnown RBP25.42■■□□□ 1.66
CLN3-208ENST00000561505 MSH6P52701 1360 aa25.42■■□□□ 1.66
CLN3-208ENST00000561505 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.41■■□□□ 1.66
CLN3-208ENST00000561505 SLAIN2Q9P270 581 aa25.41■■□□□ 1.66
CLN3-208ENST00000561505 ADAMTS13Q76LX8 1427 aa25.4■■□□□ 1.66
CLN3-208ENST00000561505 E9PCH4 1651 aa25.4■■□□□ 1.66
CLN3-208ENST00000561505 IQGAP3Q86VI3 1631 aa25.4■■□□□ 1.66
CLN3-208ENST00000561505 PIK3R4Q99570 1358 aa25.39■■□□□ 1.65
CLN3-208ENST00000561505 DIP2AQ14689 1571 aa25.35■■□□□ 1.65
CLN3-208ENST00000561505 BCANQ96GW7 911 aa25.35■■□□□ 1.65
CLN3-208ENST00000561505 PPP1R15AO75807 674 aaPredicted RBP25.33■■□□□ 1.65
CLN3-208ENST00000561505 POTEAQ6S8J7 498 aa25.33■■□□□ 1.65
CLN3-208ENST00000561505 NUP155O75694 1391 aa25.3■■□□□ 1.64
CLN3-208ENST00000561505 JCADQ9P266 1359 aa25.3■■□□□ 1.64
CLN3-208ENST00000561505 C19orf44Q9H6X5 657 aa25.28■■□□□ 1.64
CLN3-208ENST00000561505 COL16A1Q07092 1604 aaPredicted RBP25.27■■□□□ 1.64
CLN3-208ENST00000561505 PHLPP1O60346 1717 aa25.26■■□□□ 1.63
CLN3-208ENST00000561505 CHGAP10645 457 aaKnown RBP25.25■■□□□ 1.63
CLN3-208ENST00000561505 CADPS2Q86UW7 1296 aa25.25■■□□□ 1.63
CLN3-208ENST00000561505 PTPRUQ92729 1446 aa25.25■■□□□ 1.63
CLN3-208ENST00000561505 TRPM2O94759 1503 aa25.24■■□□□ 1.63
CLN3-208ENST00000561505 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.23■■□□□ 1.63
CLN3-208ENST00000561505 AHDC1Q5TGY3 1603 aaPredicted RBP25.23■■□□□ 1.63
CLN3-208ENST00000561505 NUTM2DQ5VT03 806 aaPredicted RBP25.22■■□□□ 1.63
CLN3-208ENST00000561505 AMOTL2Q9Y2J4 779 aa25.21■■□□□ 1.63
CLN3-208ENST00000561505 SETBP1Q9Y6X0 1596 aa25.21■■□□□ 1.63
CLN3-208ENST00000561505 NRXN3Q9Y4C0 1643 aa25.2■■□□□ 1.62
CLN3-208ENST00000561505 SPATA31A6Q5VVP1 1343 aa25.2■■□□□ 1.62
CLN3-208ENST00000561505 DCCP43146 1447 aa25.2■■□□□ 1.62
CLN3-208ENST00000561505 XRN1Q8IZH2 1706 aaKnown RBP25.17■■□□□ 1.62
CLN3-208ENST00000561505 ATF3P18847 181 aa25.16■■□□□ 1.62
CLN3-208ENST00000561505 LRP6O75581 1613 aa25.15■■□□□ 1.62
CLN3-208ENST00000561505 SPHKAPQ2M3C7 1700 aa25.15■■□□□ 1.62
CLN3-208ENST00000561505 BRINP3Q76B58 766 aa25.13■■□□□ 1.61
CLN3-208ENST00000561505 C14orf37Q86TY3 774 aa25.13■■□□□ 1.61
CLN3-208ENST00000561505 SHPRHQ149N8 1683 aa25.13■■□□□ 1.61
CLN3-208ENST00000561505 METP08581 1390 aa25.11■■□□□ 1.61
CLN3-208ENST00000561505 ITGAEP38570 1179 aa25.11■■□□□ 1.61
CLN3-208ENST00000561505 RRBP1Q9P2E9 1410 aaKnown RBP25.11■■□□□ 1.61
CLN3-208ENST00000561505 MST1RQ04912 1400 aa25.09■■□□□ 1.61
CLN3-208ENST00000561505 NEXMIFQ5QGS0 1516 aa25.08■■□□□ 1.61
CLN3-208ENST00000561505 SETD5Q9C0A6 1442 aa25.08■■□□□ 1.61
CLN3-208ENST00000561505 NAIPQ13075 1403 aa25.07■■□□□ 1.6
CLN3-208ENST00000561505 CLTCL1P53675 1640 aa25.05■■□□□ 1.6
CLN3-208ENST00000561505 ZNF772Q68DY9 489 aaPredicted RBP25.05■■□□□ 1.6
CLN3-208ENST00000561505 ASXL1Q8IXJ9 1541 aa25.05■■□□□ 1.6
CLN3-208ENST00000561505 ADGRL3Q9HAR2 1447 aa25.03■■□□□ 1.6
CLN3-208ENST00000561505 PRAG1Q86YV5 1406 aa25.03■■□□□ 1.6
CLN3-208ENST00000561505 NHSL1Q5SYE7 1610 aa25.02■■□□□ 1.6
CLN3-208ENST00000561505 ZNF326Q5BKZ1 582 aaKnown RBP25.02■■□□□ 1.6
CLN3-208ENST00000561505 PPARGC1BQ86YN6 1023 aaKnown RBP25.01■■□□□ 1.59
CLN3-208ENST00000561505 SETD1AO15047 1707 aaKnown RBP24.98■■□□□ 1.59
CLN3-208ENST00000561505 LRRC59Q96AG4 307 aaKnown RBP24.97■■□□□ 1.59
CLN3-208ENST00000561505 CDK12Q9NYV4 1490 aaPredicted RBP24.96■■□□□ 1.59
CLN3-208ENST00000561505 PTCH1Q13635 1447 aa24.96■■□□□ 1.59
CLN3-208ENST00000561505 HFM1A2PYH4 1435 aa24.95■■□□□ 1.59
CLN3-208ENST00000561505 RPGRIP1LQ68CZ1 1315 aa24.95■■□□□ 1.58
CLN3-208ENST00000561505 LAMC1P11047 1609 aa24.95■■□□□ 1.58
CLN3-208ENST00000561505 MEX3CQ5U5Q3 659 aaKnown RBP24.95■■□□□ 1.58
CLN3-208ENST00000561505 KIF1BO60333 1816 aa24.95■■□□□ 1.58
CLN3-208ENST00000561505 NALCNQ8IZF0 1738 aa24.95■■□□□ 1.58
CLN3-208ENST00000561505 VGFO15240 615 aaPredicted RBP24.94■■□□□ 1.58
CLN3-208ENST00000561505 C1orf167Q5SNV9 1468 aa24.92■■□□□ 1.58
CLN3-208ENST00000561505 UPF1Q92900 1129 aaKnown RBP eCLIP24.92■■□□□ 1.58
CLN3-208ENST00000561505 PNPLA6Q8IY17 1366 aa24.92■■□□□ 1.58
CLN3-208ENST00000561505 RXRBP28702 533 aa24.9■■□□□ 1.58
CLN3-208ENST00000561505 ROBO2Q9HCK4 1378 aa24.9■■□□□ 1.58
CLN3-208ENST00000561505 AFF2P51816 1311 aa24.87■■□□□ 1.57
CLN3-208ENST00000561505 SOS2Q07890 1332 aaPredicted RBP24.87■■□□□ 1.57
CLN3-208ENST00000561505 NUTM2BA6NNL0 878 aaPredicted RBP24.87■■□□□ 1.57
CLN3-208ENST00000561505 NUTM2EB1AL46 878 aaPredicted RBP24.87■■□□□ 1.57
CLN3-208ENST00000561505 NUTM2AQ8IVF1 878 aaPredicted RBP24.87■■□□□ 1.57
CLN3-208ENST00000561505 DDX17Q92841 729 aaKnown RBP24.86■■□□□ 1.57
CLN3-208ENST00000561505 TRIM52Q96A61 297 aa24.84■■□□□ 1.57
CLN3-208ENST00000561505 SLC4A1APQ9BWU0 796 aaKnown RBP24.83■■□□□ 1.57
CLN3-208ENST00000561505 PPLO60437 1756 aa24.82■■□□□ 1.56
CLN3-208ENST00000561505 ORAI2Q96SN7 254 aa24.81■■□□□ 1.56
CLN3-208ENST00000561505 RBM6P78332 1123 aaKnown RBP24.78■■□□□ 1.56
CLN3-208ENST00000561505 QTRT2Q9H974 415 aaKnown RBP24.78■■□□□ 1.56
CLN3-208ENST00000561505 TECPR2O15040 1411 aa24.77■■□□□ 1.56
CLN3-208ENST00000561505 SPATA31E1Q6ZUB1 1445 aa24.77■■□□□ 1.56
CLN3-208ENST00000561505 C8orf37Q96NL8 207 aa24.75■■□□□ 1.55
CLN3-208ENST00000561505 RGS12O14924 1447 aa24.75■■□□□ 1.55
CLN3-208ENST00000561505 CDC42BPGQ6DT37 1551 aa24.75■■□□□ 1.55
CLN3-208ENST00000561505 FNBP4Q8N3X1 1017 aaPredicted RBP24.74■■□□□ 1.55
CLN3-208ENST00000561505 COL22A1Q8NFW1 1626 aaPredicted RBP24.74■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms