RNA–Protein interactions for RNA: ENST00000561436.1

HERC1-215, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 4

Gene HERC1, Length 551 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-215ENST00000561436 ZMYND10O75800 440 aa8.11□□□□□ -1.11
HERC1-215ENST00000561436 OATP04181 439 aa8.1□□□□□ -1.11
HERC1-215ENST00000561436 BARGINQ6ZT62 677 aa8.1□□□□□ -1.11
HERC1-215ENST00000561436 TSR3Q9UJK0 312 aaKnown RBP8.1□□□□□ -1.11
HERC1-215ENST00000561436 PPP4CP60510 307 aa8.09□□□□□ -1.11
HERC1-215ENST00000561436 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.08□□□□□ -1.12
HERC1-215ENST00000561436 SLC10A3P09131 477 aa8.08□□□□□ -1.12
HERC1-215ENST00000561436 PRKCSHP14314 528 aaPredicted RBP8.08□□□□□ -1.12
HERC1-215ENST00000561436 APLP1P51693 650 aa8.08□□□□□ -1.12
HERC1-215ENST00000561436 HDGFP51858 240 aaKnown RBP8.08□□□□□ -1.12
HERC1-215ENST00000561436 MDM2Q00987 491 aaPredicted RBP8.08□□□□□ -1.12
HERC1-215ENST00000561436 MINK1Q8N4C8 1332 aaPredicted RBP8.07□□□□□ -1.12
HERC1-215ENST00000561436 SLC24A3Q9HC58 644 aa8.07□□□□□ -1.12
HERC1-215ENST00000561436 DDX11L8A8MPP1 907 aa8.06□□□□□ -1.12
HERC1-215ENST00000561436 REPIN1Q9BWE0 567 aaKnown RBP8.06□□□□□ -1.12
HERC1-215ENST00000561436 SLF2Q8IX21 1173 aa8.05□□□□□ -1.12
HERC1-215ENST00000561436 CFHP08603 1231 aa8.04□□□□□ -1.12
HERC1-215ENST00000561436 RDH13Q8NBN7 331 aa8.04□□□□□ -1.12
HERC1-215ENST00000561436 PLA2G2EQ9NZK7 142 aa8.04□□□□□ -1.12
HERC1-215ENST00000561436 COPS2P61201 443 aa8.03□□□□□ -1.12
HERC1-215ENST00000561436 DAXXQ9UER7 740 aaPredicted RBP8.02□□□□□ -1.13
HERC1-215ENST00000561436 ZNF516Q92618 1163 aa8.01□□□□□ -1.13
HERC1-215ENST00000561436 TRIM66O15016 1216 aa8□□□□□ -1.13
HERC1-215ENST00000561436 TTLL12Q14166 644 aaPredicted RBP8□□□□□ -1.13
HERC1-215ENST00000561436 PUS10Q3MIT2 529 aaKnown RBP8□□□□□ -1.13
HERC1-215ENST00000561436 MTRQ99707 1265 aa8□□□□□ -1.13
HERC1-215ENST00000561436 BLOC1S3Q6QNY0 202 aa7.99□□□□□ -1.13
HERC1-215ENST00000561436 SLC4A3P48751 1232 aa7.98□□□□□ -1.13
HERC1-215ENST00000561436 TJAP1Q5JTD0 557 aa7.98□□□□□ -1.13
HERC1-215ENST00000561436 TLL1O43897 1013 aa7.97□□□□□ -1.13
HERC1-215ENST00000561436 NKX2-3Q8TAU0 364 aa7.97□□□□□ -1.13
HERC1-215ENST00000561436 AK7Q96M32 723 aa7.97□□□□□ -1.13
HERC1-215ENST00000561436 GPCPD1Q9NPB8 672 aa7.97□□□□□ -1.13
HERC1-215ENST00000561436 FUT2Q10981 343 aa7.96□□□□□ -1.14
HERC1-215ENST00000561436 PARP9Q8IXQ6 854 aa7.96□□□□□ -1.14
HERC1-215ENST00000561436 HLA-CQ95604 372 aa7.96□□□□□ -1.14
HERC1-215ENST00000561436 TMUB1Q9BVT8 246 aa7.96□□□□□ -1.14
HERC1-215ENST00000561436 PCDHB3Q9Y5E6 796 aa7.96□□□□□ -1.14
HERC1-215ENST00000561436 CD46P15529 392 aa7.95□□□□□ -1.14
HERC1-215ENST00000561436 CLCN1P35523 988 aa7.95□□□□□ -1.14
HERC1-215ENST00000561436 KMT5BQ4FZB7 885 aa7.95□□□□□ -1.14
HERC1-215ENST00000561436 GIGYF2Q6Y7W6 1299 aaKnown RBP7.95□□□□□ -1.14
HERC1-215ENST00000561436 NYAP1Q6ZVC0 841 aa7.95□□□□□ -1.14
HERC1-215ENST00000561436 FAM217BQ9NTX9 383 aaPredicted RBP7.95□□□□□ -1.14
HERC1-215ENST00000561436 ACTN4O43707 911 aaKnown RBP7.94□□□□□ -1.14
HERC1-215ENST00000561436 ITGBL1O95965 494 aaPredicted RBP7.94□□□□□ -1.14
HERC1-215ENST00000561436 PDE4DQ08499 809 aa7.94□□□□□ -1.14
HERC1-215ENST00000561436 AMHR2Q16671 573 aa7.94□□□□□ -1.14
HERC1-215ENST00000561436 MS4A1P11836 297 aa7.93□□□□□ -1.14
HERC1-215ENST00000561436 SSTR3P32745 418 aaPredicted RBP7.93□□□□□ -1.14
HERC1-215ENST00000561436 GCGRP47871 477 aa7.93□□□□□ -1.14
HERC1-215ENST00000561436 KCNC4Q03721 635 aa7.93□□□□□ -1.14
HERC1-215ENST00000561436 SULF1Q8IWU6 871 aa7.93□□□□□ -1.14
HERC1-215ENST00000561436 GPBP1L1Q9HC44 474 aaPredicted RBP7.93□□□□□ -1.14
HERC1-215ENST00000561436 GUCA2AQ02747 115 aa7.92□□□□□ -1.14
HERC1-215ENST00000561436 IL21Q9HBE4 155 aa7.92□□□□□ -1.14
HERC1-215ENST00000561436 RSPH4AQ5TD94 716 aa7.9□□□□□ -1.14
HERC1-215ENST00000561436 NECTIN2Q92692 538 aa7.9□□□□□ -1.14
HERC1-215ENST00000561436 ZPR1O75312 459 aa7.89□□□□□ -1.15
HERC1-215ENST00000561436 BEGAINQ9BUH8 593 aa7.89□□□□□ -1.15
HERC1-215ENST00000561436 PRR14Q9BWN1 585 aa7.89□□□□□ -1.15
HERC1-215ENST00000561436 SLC27A5Q9Y2P5 690 aa7.89□□□□□ -1.15
HERC1-215ENST00000561436 KDM4AO75164 1064 aa7.88□□□□□ -1.15
HERC1-215ENST00000561436 MORN1Q5T089 497 aa7.88□□□□□ -1.15
HERC1-215ENST00000561436 SCUBE3Q8IX30 993 aa7.88□□□□□ -1.15
HERC1-215ENST00000561436 A0A0G2JS52 829 aa7.87□□□□□ -1.15
HERC1-215ENST00000561436 NDUFV2P19404 249 aa7.86□□□□□ -1.15
HERC1-215ENST00000561436 ATP6V1AP38606 617 aa7.86□□□□□ -1.15
HERC1-215ENST00000561436 RNF19BQ6ZMZ0 732 aa7.86□□□□□ -1.15
HERC1-215ENST00000561436 PPEF1O14829 653 aaPredicted RBP7.85□□□□□ -1.15
HERC1-215ENST00000561436 HOXA2O43364 376 aa7.85□□□□□ -1.15
HERC1-215ENST00000561436 PPP1R18Q6NYC8 613 aa7.85□□□□□ -1.15
HERC1-215ENST00000561436 NUTM1Q86Y26 1132 aa7.85□□□□□ -1.15
HERC1-215ENST00000561436 SPIRE2Q8WWL2 714 aa7.85□□□□□ -1.15
HERC1-215ENST00000561436 SYMPKQ92797 1274 aaKnown RBP7.85□□□□□ -1.15
HERC1-215ENST00000561436 PRDM9Q9NQV7 894 aa7.85□□□□□ -1.15
HERC1-215ENST00000561436 NR1I2O75469 434 aa7.84□□□□□ -1.15
HERC1-215ENST00000561436 S1PR4O95977 384 aa7.84□□□□□ -1.15
HERC1-215ENST00000561436 KDM4CQ9H3R0 1056 aa7.84□□□□□ -1.15
HERC1-215ENST00000561436 MOXD2PA6NHM9 499 aa7.83□□□□□ -1.16
HERC1-215ENST00000561436 IFFO2Q5TF58 517 aa7.82□□□□□ -1.16
HERC1-215ENST00000561436 THAP11Q96EK4 314 aa7.82□□□□□ -1.16
HERC1-215ENST00000561436 TBC1D2Q9BYX2 928 aa7.82□□□□□ -1.16
HERC1-215ENST00000561436 PCDHGC3Q9UN70 934 aa7.82□□□□□ -1.16
HERC1-215ENST00000561436 NEUROD2Q15784 382 aa7.81□□□□□ -1.16
HERC1-215ENST00000561436 SPSB2Q99619 263 aa7.81□□□□□ -1.16
HERC1-215ENST00000561436 FAM117AQ9C073 453 aa7.81□□□□□ -1.16
HERC1-215ENST00000561436 ADH1BP00325 375 aa7.8□□□□□ -1.16
HERC1-215ENST00000561436 CSPP1Q1MSJ5 1256 aa7.8□□□□□ -1.16
HERC1-215ENST00000561436 FAM160A2Q8N612 972 aaPredicted RBP7.8□□□□□ -1.16
HERC1-215ENST00000561436 RNF223E7ERA6 249 aa7.79□□□□□ -1.16
HERC1-215ENST00000561436 FDX1P10109 184 aa7.79□□□□□ -1.16
HERC1-215ENST00000561436 BRICD5Q6PL45 260 aa7.79□□□□□ -1.16
HERC1-215ENST00000561436 PCDHB15Q9Y5E8 787 aa7.79□□□□□ -1.16
HERC1-215ENST00000561436 FMNL1O95466 1100 aaPredicted RBP7.78□□□□□ -1.16
HERC1-215ENST00000561436 BRPF1P55201 1214 aaPredicted RBP7.78□□□□□ -1.16
HERC1-215ENST00000561436 SLC6A16Q9GZN6 736 aa7.78□□□□□ -1.16
HERC1-215ENST00000561436 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.78□□□□□ -1.16
HERC1-215ENST00000561436 LIMD1Q9UGP4 676 aa7.78□□□□□ -1.16
HERC1-215ENST00000561436 PLEKHG3A1L390 1219 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms