RNA–Protein interactions for RNA: ENST00000561395.5

TPM1-231, Transcript of tropomyosin 1, human

TSL 5

Gene TPM1, Length 673 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-231	ENST00000561395	COL16A1	Q07092	1604 aa	Predicted RBP	11.05	□□□□□ -0.64
TPM1-231	ENST00000561395	MROH1	Q8NDA8	1641 aa		11.05	□□□□□ -0.64
TPM1-231	ENST00000561395	ARHGAP23	Q9P227	1491 aa		11.05	□□□□□ -0.64
TPM1-231	ENST00000561395	RSPH4A	Q5TD94	716 aa		11.04	□□□□□ -0.64
TPM1-231	ENST00000561395	PIK3C2B	O00750	1634 aa		11.04	□□□□□ -0.64
TPM1-231	ENST00000561395	UPF1	Q92900	1129 aa	Known RBP eCLIP	11.03	□□□□□ -0.64
TPM1-231	ENST00000561395	SHPRH	Q149N8	1683 aa		11.03	□□□□□ -0.64
TPM1-231	ENST00000561395	ACIN1	Q9UKV3	1341 aa	Known RBP	11.03	□□□□□ -0.64
TPM1-231	ENST00000561395	KDM5A	P29375	1690 aa	Known RBP	11.02	□□□□□ -0.64
TPM1-231	ENST00000561395	NWD1	Q149M9	1564 aa		11.02	□□□□□ -0.65
TPM1-231	ENST00000561395	KIF15	Q9NS87	1388 aa		11.02	□□□□□ -0.65
TPM1-231	ENST00000561395	TSPY4	P0CV99	314 aa		11.01	□□□□□ -0.65
TPM1-231	ENST00000561395	TSPY10	P0CW01	314 aa		11.01	□□□□□ -0.65
TPM1-231	ENST00000561395	LRP6	O75581	1613 aa		11.01	□□□□□ -0.65
TPM1-231	ENST00000561395	TMEM94	Q12767	1356 aa		11.01	□□□□□ -0.65
TPM1-231	ENST00000561395	ANKRD50	Q9ULJ7	1429 aa		11	□□□□□ -0.65
TPM1-231	ENST00000561395	JCAD	Q9P266	1359 aa		10.99	□□□□□ -0.65
TPM1-231	ENST00000561395	PRDM15	P57071	1507 aa	Predicted RBP	10.99	□□□□□ -0.65
TPM1-231	ENST00000561395	CHD2	O14647	1828 aa	Known RBP	10.98	□□□□□ -0.65
TPM1-231	ENST00000561395	LTK	P29376	864 aa		10.98	□□□□□ -0.65
TPM1-231	ENST00000561395	TRIM52	Q96A61	297 aa		10.98	□□□□□ -0.65
TPM1-231	ENST00000561395	NKTR	P30414	1462 aa	Known RBP	10.98	□□□□□ -0.65
TPM1-231	ENST00000561395	DUOX2	Q9NRD8	1548 aa		10.98	□□□□□ -0.65
TPM1-231	ENST00000561395	UNC13B	O14795	1591 aa		10.98	□□□□□ -0.65
TPM1-231	ENST00000561395	TXNDC2	Q86VQ3	553 aa		10.97	□□□□□ -0.65
TPM1-231	ENST00000561395	MYO5B	Q9ULV0	1848 aa		10.97	□□□□□ -0.65
TPM1-231	ENST00000561395	SRCAP	Q6ZRS2	3230 aa		10.97	□□□□□ -0.65
TPM1-231	ENST00000561395	TET3	O43151	1660 aa		10.96	□□□□□ -0.65
TPM1-231	ENST00000561395	CDK12	Q9NYV4	1490 aa	Predicted RBP	10.95	□□□□□ -0.66
TPM1-231	ENST00000561395	ERBIN	Q96RT1	1412 aa		10.95	□□□□□ -0.66
TPM1-231	ENST00000561395	EFCAB6	Q5THR3	1501 aa		10.94	□□□□□ -0.66
TPM1-231	ENST00000561395	MSH6	P52701	1360 aa		10.94	□□□□□ -0.66
TPM1-231	ENST00000561395	ZNF772	Q68DY9	489 aa	Predicted RBP	10.94	□□□□□ -0.66
TPM1-231	ENST00000561395	EID1	Q9Y6B2	187 aa		10.94	□□□□□ -0.66
TPM1-231	ENST00000561395	AHDC1	Q5TGY3	1603 aa	Predicted RBP	10.94	□□□□□ -0.66
TPM1-231	ENST00000561395	MEX3C	Q5U5Q3	659 aa	Known RBP	10.93	□□□□□ -0.66
TPM1-231	ENST00000561395	RBM33	Q96EV2	1170 aa	Known RBP	10.93	□□□□□ -0.66
TPM1-231	ENST00000561395	MPHOSPH9	Q99550	1183 aa		10.93	□□□□□ -0.66
TPM1-231	ENST00000561395	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	10.92	□□□□□ -0.66
TPM1-231	ENST00000561395	TMEM2	Q9UHN6	1383 aa		10.92	□□□□□ -0.66
TPM1-231	ENST00000561395	IQGAP3	Q86VI3	1631 aa		10.92	□□□□□ -0.66
TPM1-231	ENST00000561395	SPATA31A6	Q5VVP1	1343 aa		10.92	□□□□□ -0.66
TPM1-231	ENST00000561395	DCAF8L1	A6NGE4	600 aa		10.92	□□□□□ -0.66
TPM1-231	ENST00000561395	KCNA6	P17658	529 aa		10.92	□□□□□ -0.66
TPM1-231	ENST00000561395	PROSER2	Q86WR7	435 aa	Predicted RBP	10.92	□□□□□ -0.66
TPM1-231	ENST00000561395	DIP2A	Q14689	1571 aa		10.91	□□□□□ -0.66
TPM1-231	ENST00000561395	ZBTB22	O15209	634 aa		10.91	□□□□□ -0.66
TPM1-231	ENST00000561395	ARHGAP31	Q2M1Z3	1444 aa		10.91	□□□□□ -0.66
TPM1-231	ENST00000561395	ADGRB3	O60242	1522 aa		10.9	□□□□□ -0.66
TPM1-231	ENST00000561395	SIN3A	Q96ST3	1273 aa		10.9	□□□□□ -0.66
TPM1-231	ENST00000561395	ANKRD30B	Q9BXX2	1392 aa		10.9	□□□□□ -0.67
TPM1-231	ENST00000561395	RXRB	P28702	533 aa		10.89	□□□□□ -0.67
TPM1-231	ENST00000561395	SLAIN2	Q9P270	581 aa		10.89	□□□□□ -0.67
TPM1-231	ENST00000561395	TIMELESS	Q9UNS1	1208 aa		10.89	□□□□□ -0.67
TPM1-231	ENST00000561395	RGS12	O14924	1447 aa		10.89	□□□□□ -0.67
TPM1-231	ENST00000561395	NUP155	O75694	1391 aa		10.89	□□□□□ -0.67
TPM1-231	ENST00000561395	SLC26A8	Q96RN1	970 aa		10.88	□□□□□ -0.67
TPM1-231	ENST00000561395	NHSL1	Q5SYE7	1610 aa		10.87	□□□□□ -0.67
TPM1-231	ENST00000561395	NEUROD1	Q13562	356 aa		10.87	□□□□□ -0.67
TPM1-231	ENST00000561395	RPRD2	Q5VT52	1461 aa	Known RBP	10.87	□□□□□ -0.67
TPM1-231	ENST00000561395	STAG3	Q9UJ98	1225 aa		10.86	□□□□□ -0.67
TPM1-231	ENST00000561395	SETBP1	Q9Y6X0	1596 aa		10.86	□□□□□ -0.67
TPM1-231	ENST00000561395	TONSL	Q96HA7	1378 aa		10.85	□□□□□ -0.67
TPM1-231	ENST00000561395	AFF2	P51816	1311 aa		10.84	□□□□□ -0.67
TPM1-231	ENST00000561395	EP400	Q96L91	3159 aa		10.82	□□□□□ -0.68
TPM1-231	ENST00000561395	LMTK2	Q8IWU2	1503 aa		10.82	□□□□□ -0.68
TPM1-231	ENST00000561395	NCOA3	Q9Y6Q9	1424 aa		10.82	□□□□□ -0.68
TPM1-231	ENST00000561395	ASXL1	Q8IXJ9	1541 aa		10.81	□□□□□ -0.68
TPM1-231	ENST00000561395	NUTM2B	A6NNL0	878 aa	Predicted RBP	10.81	□□□□□ -0.68
TPM1-231	ENST00000561395	NUTM2E	B1AL46	878 aa	Predicted RBP	10.81	□□□□□ -0.68
TPM1-231	ENST00000561395	NUTM2A	Q8IVF1	878 aa	Predicted RBP	10.81	□□□□□ -0.68
TPM1-231	ENST00000561395		E9PCH4	1651 aa		10.81	□□□□□ -0.68
TPM1-231	ENST00000561395	IDI1	Q13907	227 aa		10.8	□□□□□ -0.68
TPM1-231	ENST00000561395	BCAN	Q96GW7	911 aa		10.8	□□□□□ -0.68
TPM1-231	ENST00000561395	TMEM131L	A2VDJ0	1609 aa		10.8	□□□□□ -0.68
TPM1-231	ENST00000561395	ATAD2	Q6PL18	1390 aa		10.79	□□□□□ -0.68
TPM1-231	ENST00000561395	PLEKHG1	Q9ULL1	1385 aa		10.79	□□□□□ -0.68
TPM1-231	ENST00000561395	ZFYVE9	O95405	1425 aa		10.79	□□□□□ -0.68
TPM1-231	ENST00000561395	ZNF316	A6NFI3	1004 aa	Predicted RBP	10.79	□□□□□ -0.68
TPM1-231	ENST00000561395	PPP1R15A	O75807	674 aa	Predicted RBP	10.79	□□□□□ -0.68
TPM1-231	ENST00000561395	NUTM2D	Q5VT03	806 aa	Predicted RBP	10.79	□□□□□ -0.68
TPM1-231	ENST00000561395	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	10.79	□□□□□ -0.68	1e-6	■■■□□ 19
TPM1-231	ENST00000561395	FOXD4L1	Q9NU39	408 aa		10.79	□□□□□ -0.68
TPM1-231	ENST00000561395	KANK1	Q14678	1352 aa		10.78	□□□□□ -0.68
TPM1-231	ENST00000561395	SPHKAP	Q2M3C7	1700 aa		10.78	□□□□□ -0.68
TPM1-231	ENST00000561395	NOS1	P29475	1434 aa		10.78	□□□□□ -0.68
TPM1-231	ENST00000561395	LRP5	O75197	1615 aa		10.78	□□□□□ -0.68
TPM1-231	ENST00000561395	SLC4A2	P04920	1241 aa		10.78	□□□□□ -0.68
TPM1-231	ENST00000561395	RBM6	P78332	1123 aa	Known RBP	10.78	□□□□□ -0.68
TPM1-231	ENST00000561395	C14orf37	Q86TY3	774 aa		10.78	□□□□□ -0.68
TPM1-231	ENST00000561395	CADPS2	Q86UW7	1296 aa		10.78	□□□□□ -0.68
TPM1-231	ENST00000561395	MARF1	Q9Y4F3	1742 aa	Known RBP	10.78	□□□□□ -0.68
TPM1-231	ENST00000561395	ZRANB1	Q9UGI0	708 aa		10.77	□□□□□ -0.69
TPM1-231	ENST00000561395	TRPM2	O94759	1503 aa		10.77	□□□□□ -0.69
TPM1-231	ENST00000561395	XRN1	Q8IZH2	1706 aa	Known RBP	10.76	□□□□□ -0.69
TPM1-231	ENST00000561395	ATF3	P18847	181 aa		10.76	□□□□□ -0.69
TPM1-231	ENST00000561395	BRINP3	Q76B58	766 aa		10.76	□□□□□ -0.69
TPM1-231	ENST00000561395	C8orf37	Q96NL8	207 aa		10.76	□□□□□ -0.69
TPM1-231	ENST00000561395	QTRT2	Q9H974	415 aa	Known RBP	10.76	□□□□□ -0.69
TPM1-231	ENST00000561395	RIMS2	Q9UQ26	1411 aa		10.75	□□□□□ -0.69

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