RNA–Protein interactions for RNA: ENST00000561071.5

MARK3-223, Transcript of microtubule affinity regulating kinase 3, human

TSL 3

Gene MARK3, Length 746 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MARK3-223	ENST00000561071	RAD54L2	Q9Y4B4	1467 aa		12.64	□□□□□ -0.39
MARK3-223	ENST00000561071	PDE4D	Q08499	809 aa		12.63	□□□□□ -0.39
MARK3-223	ENST00000561071	METTL3	Q86U44	580 aa	Known RBP	12.63	□□□□□ -0.39
MARK3-223	ENST00000561071	KIAA1468	Q9P260	1216 aa		12.63	□□□□□ -0.39
MARK3-223	ENST00000561071	EIF4G3	O43432	1585 aa	Known RBP	12.63	□□□□□ -0.39
MARK3-223	ENST00000561071	TARBP1	Q13395	1621 aa	Known RBP	12.62	□□□□□ -0.39
MARK3-223	ENST00000561071	SMAP	O00193	183 aa		12.62	□□□□□ -0.39
MARK3-223	ENST00000561071	NEUROD2	Q15784	382 aa		12.62	□□□□□ -0.39
MARK3-223	ENST00000561071	NUDT18	Q6ZVK8	323 aa		12.62	□□□□□ -0.39
MARK3-223	ENST00000561071	PACS2	Q86VP3	889 aa		12.62	□□□□□ -0.39
MARK3-223	ENST00000561071	PXYLP1	Q8TE99	480 aa		12.62	□□□□□ -0.39
MARK3-223	ENST00000561071	NLRP7	Q8WX94	980 aa		12.62	□□□□□ -0.39
MARK3-223	ENST00000561071	VPS9D1	Q9Y2B5	631 aa		12.62	□□□□□ -0.39
MARK3-223	ENST00000561071	TDRD9	Q8NDG6	1382 aa	Known RBP	12.61	□□□□□ -0.39
MARK3-223	ENST00000561071	OAT	P04181	439 aa		12.61	□□□□□ -0.39
MARK3-223	ENST00000561071	LSM11	P83369	360 aa	Known RBP eCLIP	12.61	□□□□□ -0.39	5e-18	■■■■■ 28.9
MARK3-223	ENST00000561071	POTEG	Q6S5H5	508 aa		12.61	□□□□□ -0.39
MARK3-223	ENST00000561071	TATDN2	Q93075	761 aa		12.61	□□□□□ -0.39
MARK3-223	ENST00000561071	SLC4A5	Q9BY07	1137 aa		12.61	□□□□□ -0.39
MARK3-223	ENST00000561071	PNMA3	Q9UL41	463 aa		12.61	□□□□□ -0.39
MARK3-223	ENST00000561071	SOGA1	O94964	1423 aa		12.61	□□□□□ -0.39
MARK3-223	ENST00000561071	ONECUT3	O60422	494 aa	Predicted RBP	12.6	□□□□□ -0.39
MARK3-223	ENST00000561071	GPBP1L1	Q9HC44	474 aa	Predicted RBP	12.6	□□□□□ -0.39
MARK3-223	ENST00000561071	POTEM	A6NI47	508 aa		12.59	□□□□□ -0.39
MARK3-223	ENST00000561071	NBPF26	B4DH59	902 aa		12.59	□□□□□ -0.39
MARK3-223	ENST00000561071	AMHR2	Q16671	573 aa		12.59	□□□□□ -0.39
MARK3-223	ENST00000561071	RBM46	Q8TBY0	533 aa	Known RBP	12.59	□□□□□ -0.39
MARK3-223	ENST00000561071	EYA1	Q99502	592 aa		12.59	□□□□□ -0.39
MARK3-223	ENST00000561071	RABGEF1	Q9UJ41	708 aa		12.59	□□□□□ -0.39
MARK3-223	ENST00000561071	CUX1	P39880	1505 aa		12.57	□□□□□ -0.4
MARK3-223	ENST00000561071	KRTAP3-3	Q9BYR6	98 aa		12.57	□□□□□ -0.4
MARK3-223	ENST00000561071	KRTAP3-2	Q9BYR7	98 aa		12.57	□□□□□ -0.4
MARK3-223	ENST00000561071	SEPT9	Q9UHD8	586 aa	Predicted RBP	12.57	□□□□□ -0.4
MARK3-223	ENST00000561071	FGD5	Q6ZNL6	1462 aa		12.57	□□□□□ -0.4
MARK3-223	ENST00000561071	ADGRD1	Q6QNK2	874 aa		12.56	□□□□□ -0.4
MARK3-223	ENST00000561071	ANKRD13D	Q6ZTN6	518 aa		12.56	□□□□□ -0.4
MARK3-223	ENST00000561071	PARP9	Q8IXQ6	854 aa		12.56	□□□□□ -0.4
MARK3-223	ENST00000561071	REPIN1	Q9BWE0	567 aa	Known RBP	12.56	□□□□□ -0.4
MARK3-223	ENST00000561071	RIMBP3C	A6NJZ7	1639 aa		12.55	□□□□□ -0.4
MARK3-223	ENST00000561071	RIMBP3B	A6NNM3	1639 aa		12.55	□□□□□ -0.4
MARK3-223	ENST00000561071	RIMBP3	Q9UFD9	1639 aa		12.55	□□□□□ -0.4
MARK3-223	ENST00000561071	MDM2	Q00987	491 aa	Predicted RBP	12.55	□□□□□ -0.4
MARK3-223	ENST00000561071	TTLL12	Q14166	644 aa	Predicted RBP	12.55	□□□□□ -0.4
MARK3-223	ENST00000561071	RCCD1	A6NED2	376 aa		12.54	□□□□□ -0.4
MARK3-223	ENST00000561071	TK2	O00142	265 aa		12.54	□□□□□ -0.4
MARK3-223	ENST00000561071	CHD1	O14646	1710 aa		12.53	□□□□□ -0.4
MARK3-223	ENST00000561071	ARHGEF11	O15085	1522 aa		12.52	□□□□□ -0.4
MARK3-223	ENST00000561071	BHMG1	C9JSJ3	638 aa	Predicted RBP	12.52	□□□□□ -0.41
MARK3-223	ENST00000561071	CYB5RL	Q6IPT4	315 aa		12.52	□□□□□ -0.41
MARK3-223	ENST00000561071	CDAN1	Q8IWY9	1227 aa		12.52	□□□□□ -0.41
MARK3-223	ENST00000561071	KDM4C	Q9H3R0	1056 aa		12.52	□□□□□ -0.41
MARK3-223	ENST00000561071	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	12.5	□□□□□ -0.41
MARK3-223	ENST00000561071	GIGYF2	Q6Y7W6	1299 aa	Known RBP	12.5	□□□□□ -0.41
MARK3-223	ENST00000561071	TMUB1	Q9BVT8	246 aa		12.5	□□□□□ -0.41
MARK3-223	ENST00000561071	SNAPC4	Q5SXM2	1469 aa		12.5	□□□□□ -0.41
MARK3-223	ENST00000561071	HR	O43593	1189 aa		12.49	□□□□□ -0.41
MARK3-223	ENST00000561071	DNAJB2	P25686	324 aa		12.49	□□□□□ -0.41
MARK3-223	ENST00000561071	CLCN1	P35523	988 aa		12.49	□□□□□ -0.41
MARK3-223	ENST00000561071	NBPF3	Q9H094	633 aa		12.49	□□□□□ -0.41
MARK3-223	ENST00000561071	GPCPD1	Q9NPB8	672 aa		12.49	□□□□□ -0.41
MARK3-223	ENST00000561071	CHMP7	Q8WUX9	453 aa	Predicted RBP	12.48	□□□□□ -0.41
MARK3-223	ENST00000561071	FAM98C	Q17RN3	349 aa	Known RBP	12.47	□□□□□ -0.41
MARK3-223	ENST00000561071	TMEM134	Q9H6X4	195 aa		12.46	□□□□□ -0.41
MARK3-223	ENST00000561071	GRIN2B	Q13224	1484 aa		12.46	□□□□□ -0.42
MARK3-223	ENST00000561071	MS4A1	P11836	297 aa		12.45	□□□□□ -0.42
MARK3-223	ENST00000561071	MRPL50	Q8N5N7	158 aa	Known RBP	12.45	□□□□□ -0.42
MARK3-223	ENST00000561071	DAXX	Q9UER7	740 aa	Predicted RBP	12.44	□□□□□ -0.42
MARK3-223	ENST00000561071	GAPVD1	Q14C86	1478 aa		12.43	□□□□□ -0.42
MARK3-223	ENST00000561071	SWT1	Q5T5J6	900 aa	Known RBP	12.43	□□□□□ -0.42
MARK3-223	ENST00000561071	LAPTM4B	Q86VI4	370 aa		12.43	□□□□□ -0.42
MARK3-223	ENST00000561071	FAM217B	Q9NTX9	383 aa	Predicted RBP	12.43	□□□□□ -0.42
MARK3-223	ENST00000561071	ARAP1	Q96P48	1450 aa		12.42	□□□□□ -0.42
MARK3-223	ENST00000561071	MAGI1	Q96QZ7	1491 aa	Predicted RBP	12.42	□□□□□ -0.42
MARK3-223	ENST00000561071	SSTR3	P32745	418 aa	Predicted RBP	12.42	□□□□□ -0.42
MARK3-223	ENST00000561071	ZFR	Q96KR1	1074 aa	Known RBP	12.42	□□□□□ -0.42
MARK3-223	ENST00000561071	FAM117A	Q9C073	453 aa		12.42	□□□□□ -0.42
MARK3-223	ENST00000561071	WDR97	A6NE52	1622 aa		12.41	□□□□□ -0.42
MARK3-223	ENST00000561071	SAMD7	Q7Z3H4	446 aa		12.41	□□□□□ -0.42
MARK3-223	ENST00000561071	SYNJ2	O15056	1496 aa		12.4	□□□□□ -0.42
MARK3-223	ENST00000561071	IL27	Q8NEV9	243 aa		12.4	□□□□□ -0.42
MARK3-223	ENST00000561071	STAC3	Q96MF2	364 aa		12.4	□□□□□ -0.42
MARK3-223	ENST00000561071	ABCA10	Q8WWZ4	1543 aa		12.4	□□□□□ -0.42
MARK3-223	ENST00000561071	DDX11L8	A8MPP1	907 aa		12.39	□□□□□ -0.43
MARK3-223	ENST00000561071	WRN	Q14191	1432 aa	Predicted RBP eCLIP	12.38	□□□□□ -0.43
MARK3-223	ENST00000561071	CLASP1	Q7Z460	1538 aa		12.38	□□□□□ -0.43
MARK3-223	ENST00000561071	PBRM1	Q86U86	1689 aa		12.38	□□□□□ -0.43
MARK3-223	ENST00000561071	SYNJ1	O43426	1573 aa		12.37	□□□□□ -0.43
MARK3-223	ENST00000561071	ABCA5	Q8WWZ7	1642 aa		12.37	□□□□□ -0.43
MARK3-223	ENST00000561071	HDGF	P51858	240 aa	Known RBP	12.36	□□□□□ -0.43
MARK3-223	ENST00000561071	PLEKHG3	A1L390	1219 aa		12.35	□□□□□ -0.43
MARK3-223	ENST00000561071	GOLGA8CP	A6NN73	597 aa		12.35	□□□□□ -0.43
MARK3-223	ENST00000561071	TOP2B	Q02880	1626 aa		12.34	□□□□□ -0.43
MARK3-223	ENST00000561071	RNF40	O75150	1001 aa		12.34	□□□□□ -0.43
MARK3-223	ENST00000561071	BEGAIN	Q9BUH8	593 aa		12.34	□□□□□ -0.43
MARK3-223	ENST00000561071	SLC10A3	P09131	477 aa		12.33	□□□□□ -0.44
MARK3-223	ENST00000561071	CD46	P15529	392 aa		12.33	□□□□□ -0.44
MARK3-223	ENST00000561071	SULF1	Q8IWU6	871 aa		12.33	□□□□□ -0.44
MARK3-223	ENST00000561071	RDH13	Q8NBN7	331 aa		12.33	□□□□□ -0.44
MARK3-223	ENST00000561071	DDRGK1	Q96HY6	314 aa		12.33	□□□□□ -0.44
MARK3-223	ENST00000561071	BIVM-ERCC5	R4GMW8	1640 aa		12.33	□□□□□ -0.44

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