RNA–Protein interactions for RNA: ENST00000560970.5

TPM1-227, Transcript of tropomyosin 1, humanhuman

TSL 1 (best)

Gene TPM1, Length 1,039 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-227ENST00000560970 STAG3Q9UJ98 1225 aa16.64■□□□□ 0.25
TPM1-227ENST00000560970 CHIC2Q9UKJ5 165 aa16.64■□□□□ 0.25
TPM1-227ENST00000560970 PHF23Q9BUL5 403 aaPredicted RBP16.63■□□□□ 0.25
TPM1-227ENST00000560970 TMEM94Q12767 1356 aa16.61■□□□□ 0.25
TPM1-227ENST00000560970 IDI1Q13907 227 aa16.6■□□□□ 0.25
TPM1-227ENST00000560970 FAM135BQ49AJ0 1406 aa16.59■□□□□ 0.25
TPM1-227ENST00000560970 FAM50AQ14320 339 aaKnown RBP16.58■□□□□ 0.24
TPM1-227ENST00000560970 SENP3Q9H4L4 574 aaPredicted RBP16.58■□□□□ 0.24
TPM1-227ENST00000560970 PLEKHG1Q9ULL1 1385 aa16.58■□□□□ 0.24
TPM1-227ENST00000560970 SETD1AO15047 1707 aaKnown RBP16.57■□□□□ 0.24
TPM1-227ENST00000560970 COL16A1Q07092 1604 aaPredicted RBP16.57■□□□□ 0.24
TPM1-227ENST00000560970 RIMS2Q9UQ26 1411 aa16.57■□□□□ 0.24
TPM1-227ENST00000560970 SLC52A1Q9NWF4 448 aa16.57■□□□□ 0.24
TPM1-227ENST00000560970 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.56■□□□□ 0.24
TPM1-227ENST00000560970 ROCK1Q13464 1354 aa16.56■□□□□ 0.24
TPM1-227ENST00000560970 XRN1Q8IZH2 1706 aaKnown RBP16.56■□□□□ 0.24
TPM1-227ENST00000560970 TRPM2O94759 1503 aa16.55■□□□□ 0.24
TPM1-227ENST00000560970 KCNA6P17658 529 aa16.55■□□□□ 0.24
TPM1-227ENST00000560970 NRXN3Q9Y4C0 1643 aa16.55■□□□□ 0.24
TPM1-227ENST00000560970 MSH6P52701 1360 aa16.54■□□□□ 0.24
TPM1-227ENST00000560970 SHPRHQ149N8 1683 aa16.54■□□□□ 0.24
TPM1-227ENST00000560970 SLC26A8Q96RN1 970 aa16.53■□□□□ 0.24
TPM1-227ENST00000560970 PPARGC1BQ86YN6 1023 aaKnown RBP16.52■□□□□ 0.24
TPM1-227ENST00000560970 AHDC1Q5TGY3 1603 aaPredicted RBP16.52■□□□□ 0.23
TPM1-227ENST00000560970 KIF1BO60333 1816 aa16.52■□□□□ 0.23
TPM1-227ENST00000560970 SETBP1Q9Y6X0 1596 aa16.51■□□□□ 0.23
TPM1-227ENST00000560970 PPP1R15AO75807 674 aaPredicted RBP16.49■□□□□ 0.23
TPM1-227ENST00000560970 ADAMTS13Q76LX8 1427 aa16.49■□□□□ 0.23
TPM1-227ENST00000560970 CLTCL1P53675 1640 aa16.48■□□□□ 0.23
TPM1-227ENST00000560970 PROSER2Q86WR7 435 aaPredicted RBP16.48■□□□□ 0.23
TPM1-227ENST00000560970 NHSL1Q5SYE7 1610 aa16.48■□□□□ 0.23
TPM1-227ENST00000560970 NALCNQ8IZF0 1738 aa16.48■□□□□ 0.23
TPM1-227ENST00000560970 NCOA3Q9Y6Q9 1424 aa16.47■□□□□ 0.23
TPM1-227ENST00000560970 BCANQ96GW7 911 aa16.46■□□□□ 0.23
TPM1-227ENST00000560970 PIK3R4Q99570 1358 aa16.46■□□□□ 0.23
TPM1-227ENST00000560970 RBM33Q96EV2 1170 aaKnown RBP16.45■□□□□ 0.22
TPM1-227ENST00000560970 HDGFP51858 240 aaKnown RBP16.43■□□□□ 0.22
TPM1-227ENST00000560970 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.43■□□□□ 0.22
TPM1-227ENST00000560970 NEXMIFQ5QGS0 1516 aa16.43■□□□□ 0.22
TPM1-227ENST00000560970 JCADQ9P266 1359 aa16.42■□□□□ 0.22
TPM1-227ENST00000560970 RGS17Q9UGC6 210 aaPredicted RBP16.42■□□□□ 0.22
TPM1-227ENST00000560970 DCCP43146 1447 aa16.42■□□□□ 0.22
TPM1-227ENST00000560970 NUP155O75694 1391 aa16.41■□□□□ 0.22
TPM1-227ENST00000560970 LRP6O75581 1613 aa16.41■□□□□ 0.22
TPM1-227ENST00000560970 CHGAP10645 457 aaKnown RBP16.4■□□□□ 0.22
TPM1-227ENST00000560970 TBX22Q9Y458 520 aa16.4■□□□□ 0.22
TPM1-227ENST00000560970 ASXL1Q8IXJ9 1541 aa16.4■□□□□ 0.22
TPM1-227ENST00000560970 PPLO60437 1756 aa16.39■□□□□ 0.21
TPM1-227ENST00000560970 PTPRUQ92729 1446 aa16.38■□□□□ 0.21
TPM1-227ENST00000560970 SLAIN2Q9P270 581 aa16.38■□□□□ 0.21
TPM1-227ENST00000560970 RRBP1Q9P2E9 1410 aaKnown RBP16.37■□□□□ 0.21
TPM1-227ENST00000560970 LAMC1P11047 1609 aa16.36■□□□□ 0.21
TPM1-227ENST00000560970 NUTM2DQ5VT03 806 aaPredicted RBP16.35■□□□□ 0.21
TPM1-227ENST00000560970 C14orf37Q86TY3 774 aa16.35■□□□□ 0.21
TPM1-227ENST00000560970 IFT172Q9UG01 1749 aa16.33■□□□□ 0.21
TPM1-227ENST00000560970 CADPS2Q86UW7 1296 aa16.33■□□□□ 0.2
TPM1-227ENST00000560970 SPATA31A6Q5VVP1 1343 aa16.33■□□□□ 0.2
TPM1-227ENST00000560970 ITGAEP38570 1179 aa16.32■□□□□ 0.2
TPM1-227ENST00000560970 MST1RQ04912 1400 aa16.32■□□□□ 0.2
TPM1-227ENST00000560970 POTEAQ6S8J7 498 aa16.32■□□□□ 0.2
TPM1-227ENST00000560970 ADGRL3Q9HAR2 1447 aa16.32■□□□□ 0.2
TPM1-227ENST00000560970 NAIPQ13075 1403 aa16.3■□□□□ 0.2
TPM1-227ENST00000560970 ATF3P18847 181 aa16.3■□□□□ 0.2
TPM1-227ENST00000560970 C19orf44Q9H6X5 657 aa16.3■□□□□ 0.2
TPM1-227ENST00000560970 PTCH1Q13635 1447 aa16.29■□□□□ 0.2
TPM1-227ENST00000560970 PRAG1Q86YV5 1406 aa16.28■□□□□ 0.2
TPM1-227ENST00000560970 AMOTL2Q9Y2J4 779 aa16.28■□□□□ 0.2
TPM1-227ENST00000560970 KNDC1Q76NI1 1749 aa16.28■□□□□ 0.2
TPM1-227ENST00000560970 METP08581 1390 aa16.27■□□□□ 0.2
TPM1-227ENST00000560970 MARF1Q9Y4F3 1742 aaKnown RBP16.27■□□□□ 0.19
TPM1-227ENST00000560970 HFM1A2PYH4 1435 aa16.27■□□□□ 0.19
TPM1-227ENST00000560970 SETD5Q9C0A6 1442 aa16.27■□□□□ 0.19
TPM1-227ENST00000560970 CDC42BPGQ6DT37 1551 aa16.26■□□□□ 0.19
TPM1-227ENST00000560970 ZNF326Q5BKZ1 582 aaKnown RBP16.25■□□□□ 0.19
TPM1-227ENST00000560970 BRINP3Q76B58 766 aa16.25■□□□□ 0.19
TPM1-227ENST00000560970 COL22A1Q8NFW1 1626 aaPredicted RBP16.25■□□□□ 0.19
TPM1-227ENST00000560970 CDK12Q9NYV4 1490 aaPredicted RBP16.24■□□□□ 0.19
TPM1-227ENST00000560970 MEX3CQ5U5Q3 659 aaKnown RBP16.24■□□□□ 0.19
TPM1-227ENST00000560970 ZNF772Q68DY9 489 aaPredicted RBP16.2■□□□□ 0.18
TPM1-227ENST00000560970 C1orf167Q5SNV9 1468 aa16.18■□□□□ 0.18
TPM1-227ENST00000560970 PNPLA6Q8IY17 1366 aa16.18■□□□□ 0.18
TPM1-227ENST00000560970 KIF1AQ12756 1690 aa16.18■□□□□ 0.18
TPM1-227ENST00000560970 FMN2Q9NZ56 1722 aa16.17■□□□□ 0.18
TPM1-227ENST00000560970 ROBO2Q9HCK4 1378 aa16.15■□□□□ 0.18
TPM1-227ENST00000560970 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.15■□□□□ 0.18
TPM1-227ENST00000560970 RGS12O14924 1447 aa16.14■□□□□ 0.17
TPM1-227ENST00000560970 NUTM2BA6NNL0 878 aaPredicted RBP16.13■□□□□ 0.17
TPM1-227ENST00000560970 NUTM2EB1AL46 878 aaPredicted RBP16.13■□□□□ 0.17
TPM1-227ENST00000560970 NUTM2AQ8IVF1 878 aaPredicted RBP16.13■□□□□ 0.17
TPM1-227ENST00000560970 TRIM52Q96A61 297 aa16.13■□□□□ 0.17
TPM1-227ENST00000560970 AFF2P51816 1311 aa16.13■□□□□ 0.17
TPM1-227ENST00000560970 ABCA3Q99758 1704 aa16.12■□□□□ 0.17
TPM1-227ENST00000560970 LRRC59Q96AG4 307 aaKnown RBP16.12■□□□□ 0.17
TPM1-227ENST00000560970 CCDC144AA2RUR9 1427 aa16.11■□□□□ 0.17
TPM1-227ENST00000560970 VGFO15240 615 aaPredicted RBP16.11■□□□□ 0.17
TPM1-227ENST00000560970 RPGRIP1LQ68CZ1 1315 aa16.11■□□□□ 0.17
TPM1-227ENST00000560970 TECPR2O15040 1411 aa16.11■□□□□ 0.17
TPM1-227ENST00000560970 RGPD8O14715 1765 aaPredicted RBP16.1■□□□□ 0.17
TPM1-227ENST00000560970 PXDNQ92626 1479 aa16.1■□□□□ 0.17
TPM1-227ENST00000560970 RXRBP28702 533 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms