RNA–Protein interactions for RNA: ENST00000560620.1

CTDSPL2-209, Transcript of CTD small phosphatase like 2, humanhuman

TSL 3

Gene CTDSPL2, Length 863 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSPL2-209ENST00000560620 IQSEC2Q5JU85 1478 aa19.31■□□□□ 0.68
CTDSPL2-209ENST00000560620 NUTM2DQ5VT03 806 aaPredicted RBP19.31■□□□□ 0.68
CTDSPL2-209ENST00000560620 SLC26A8Q96RN1 970 aa19.31■□□□□ 0.68
CTDSPL2-209ENST00000560620 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.3■□□□□ 0.68
CTDSPL2-209ENST00000560620 SETD5Q9C0A6 1442 aa19.3■□□□□ 0.68
CTDSPL2-209ENST00000560620 UBAP1LF5GYI3 381 aa19.28■□□□□ 0.68
CTDSPL2-209ENST00000560620 ZFYVE9O95405 1425 aa19.27■□□□□ 0.68
CTDSPL2-209ENST00000560620 FOXD1Q16676 465 aa19.27■□□□□ 0.68
CTDSPL2-209ENST00000560620 TRPM2O94759 1503 aa19.26■□□□□ 0.67
CTDSPL2-209ENST00000560620 MPHOSPH9Q99550 1183 aa19.26■□□□□ 0.67
CTDSPL2-209ENST00000560620 ACIN1Q9UKV3 1341 aaKnown RBP19.25■□□□□ 0.67
CTDSPL2-209ENST00000560620 CLTCL1P53675 1640 aa19.25■□□□□ 0.67
CTDSPL2-209ENST00000560620 PLEKHG1Q9ULL1 1385 aa19.25■□□□□ 0.67
CTDSPL2-209ENST00000560620 SCAF1Q9H7N4 1312 aaKnown RBP19.25■□□□□ 0.67
CTDSPL2-209ENST00000560620 STRCP1A6NGW2 1772 aa19.24■□□□□ 0.67
CTDSPL2-209ENST00000560620 KIF1BO60333 1816 aa19.23■□□□□ 0.67
CTDSPL2-209ENST00000560620 RAB3GAP2Q9H2M9 1393 aa19.23■□□□□ 0.67
CTDSPL2-209ENST00000560620 TOM1O60784 492 aa19.21■□□□□ 0.67
CTDSPL2-209ENST00000560620 KCNA6P17658 529 aa19.2■□□□□ 0.66
CTDSPL2-209ENST00000560620 PIP4K2BP78356 416 aa19.2■□□□□ 0.66
CTDSPL2-209ENST00000560620 LRRC7Q96NW7 1537 aa19.2■□□□□ 0.66
CTDSPL2-209ENST00000560620 PROSER2Q86WR7 435 aaPredicted RBP19.18■□□□□ 0.66
CTDSPL2-209ENST00000560620 CCDC144AA2RUR9 1427 aa19.17■□□□□ 0.66
CTDSPL2-209ENST00000560620 TBX22Q9Y458 520 aa19.17■□□□□ 0.66
CTDSPL2-209ENST00000560620 RBM33Q96EV2 1170 aaKnown RBP19.15■□□□□ 0.66
CTDSPL2-209ENST00000560620 RGL3Q3MIN7 710 aa19.13■□□□□ 0.65
CTDSPL2-209ENST00000560620 ADAMTS13Q76LX8 1427 aa19.13■□□□□ 0.65
CTDSPL2-209ENST00000560620 NEXMIFQ5QGS0 1516 aa19.13■□□□□ 0.65
CTDSPL2-209ENST00000560620 DIP2AQ14689 1571 aa19.13■□□□□ 0.65
CTDSPL2-209ENST00000560620 TMEM94Q12767 1356 aa19.12■□□□□ 0.65
CTDSPL2-209ENST00000560620 VGFO15240 615 aaPredicted RBP19.12■□□□□ 0.65
CTDSPL2-209ENST00000560620 NKTRP30414 1462 aaKnown RBP19.11■□□□□ 0.65
CTDSPL2-209ENST00000560620 CHD2O14647 1828 aaKnown RBP19.11■□□□□ 0.65
CTDSPL2-209ENST00000560620 NWD1Q149M9 1564 aa19.1■□□□□ 0.65
CTDSPL2-209ENST00000560620 RPGRIP1LQ68CZ1 1315 aa19.1■□□□□ 0.65
CTDSPL2-209ENST00000560620 C14orf37Q86TY3 774 aa19.1■□□□□ 0.65
CTDSPL2-209ENST00000560620 XIRP1Q702N8 1843 aaKnown RBP19.09■□□□□ 0.65
CTDSPL2-209ENST00000560620 SETBP1Q9Y6X0 1596 aa19.08■□□□□ 0.65
CTDSPL2-209ENST00000560620 AMOTL2Q9Y2J4 779 aa19.08■□□□□ 0.64
CTDSPL2-209ENST00000560620 PIK3R4Q99570 1358 aa19.07■□□□□ 0.64
CTDSPL2-209ENST00000560620 HRCP23327 699 aa19.07■□□□□ 0.64
CTDSPL2-209ENST00000560620 NRXN3Q9Y4C0 1643 aa19.07■□□□□ 0.64
CTDSPL2-209ENST00000560620 MSH6P52701 1360 aa19.06■□□□□ 0.64
CTDSPL2-209ENST00000560620 PPLO60437 1756 aa19.05■□□□□ 0.64
CTDSPL2-209ENST00000560620 METP08581 1390 aa19.04■□□□□ 0.64
CTDSPL2-209ENST00000560620 PTPRUQ92729 1446 aa19.02■□□□□ 0.64
CTDSPL2-209ENST00000560620 SPATA31E1Q6ZUB1 1445 aa19.01■□□□□ 0.63
CTDSPL2-209ENST00000560620 ALKQ9UM73 1620 aa19.01■□□□□ 0.63
CTDSPL2-209ENST00000560620 HSPA1LP34931 641 aa19.01■□□□□ 0.63
CTDSPL2-209ENST00000560620 ANKRD30BQ9BXX2 1392 aa19■□□□□ 0.63
CTDSPL2-209ENST00000560620 ADGRF5Q8IZF2 1346 aa19■□□□□ 0.63
CTDSPL2-209ENST00000560620 ATF3P18847 181 aa18.97■□□□□ 0.63
CTDSPL2-209ENST00000560620 NCOA3Q9Y6Q9 1424 aa18.97■□□□□ 0.63
CTDSPL2-209ENST00000560620 XRN1Q8IZH2 1706 aaKnown RBP18.97■□□□□ 0.63
CTDSPL2-209ENST00000560620 C19orf44Q9H6X5 657 aa18.96■□□□□ 0.63
CTDSPL2-209ENST00000560620 IFT172Q9UG01 1749 aa18.96■□□□□ 0.63
CTDSPL2-209ENST00000560620 SLAIN2Q9P270 581 aa18.95■□□□□ 0.62
CTDSPL2-209ENST00000560620 CADPS2Q86UW7 1296 aa18.94■□□□□ 0.62
CTDSPL2-209ENST00000560620 SETD1AO15047 1707 aaKnown RBP18.93■□□□□ 0.62
CTDSPL2-209ENST00000560620 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.92■□□□□ 0.62
CTDSPL2-209ENST00000560620 STK26Q9P289 416 aa18.92■□□□□ 0.62
CTDSPL2-209ENST00000560620 KDM2AQ9Y2K7 1162 aa18.92■□□□□ 0.62
CTDSPL2-209ENST00000560620 ROBO1Q9Y6N7 1651 aa18.92■□□□□ 0.62
CTDSPL2-209ENST00000560620 FAM135BQ49AJ0 1406 aa18.91■□□□□ 0.62
CTDSPL2-209ENST00000560620 DCAF11Q8TEB1 546 aa18.9■□□□□ 0.62
CTDSPL2-209ENST00000560620 DISP3Q9P2K9 1392 aa18.9■□□□□ 0.62
CTDSPL2-209ENST00000560620 PIK3C2GO75747 1445 aa18.9■□□□□ 0.62
CTDSPL2-209ENST00000560620 TRIM26Q12899 539 aaPredicted RBP18.89■□□□□ 0.61
CTDSPL2-209ENST00000560620 TMEM132EQ6IEE7 984 aa18.89■□□□□ 0.61
CTDSPL2-209ENST00000560620 MYOM2P54296 1465 aa18.87■□□□□ 0.61
CTDSPL2-209ENST00000560620 PTCH1Q13635 1447 aa18.87■□□□□ 0.61
CTDSPL2-209ENST00000560620 ROBO2Q9HCK4 1378 aa18.87■□□□□ 0.61
CTDSPL2-209ENST00000560620 CFAP70Q5T0N1 1121 aa18.86■□□□□ 0.61
CTDSPL2-209ENST00000560620 DCCP43146 1447 aa18.85■□□□□ 0.61
CTDSPL2-209ENST00000560620 ADGRL3Q9HAR2 1447 aa18.85■□□□□ 0.61
CTDSPL2-209ENST00000560620 NALCNQ8IZF0 1738 aa18.84■□□□□ 0.61
CTDSPL2-209ENST00000560620 C14orf93Q9H972 538 aaKnown RBP18.84■□□□□ 0.61
CTDSPL2-209ENST00000560620 LAMC1P11047 1609 aa18.83■□□□□ 0.61
CTDSPL2-209ENST00000560620 NRXN1Q9ULB1 1477 aa18.83■□□□□ 0.6
CTDSPL2-209ENST00000560620 LRPPRCP42704 1394 aaKnown RBP18.82■□□□□ 0.6
CTDSPL2-209ENST00000560620 DHX57Q6P158 1386 aaKnown RBP18.82■□□□□ 0.6
CTDSPL2-209ENST00000560620 PHLPP1O60346 1717 aa18.81■□□□□ 0.6
CTDSPL2-209ENST00000560620 WAPLQ7Z5K2 1190 aa18.81■□□□□ 0.6
CTDSPL2-209ENST00000560620 YTHDC2Q9H6S0 1430 aaKnown RBP18.81■□□□□ 0.6
CTDSPL2-209ENST00000560620 ASXL1Q8IXJ9 1541 aa18.8■□□□□ 0.6
CTDSPL2-209ENST00000560620 STAC3Q96MF2 364 aa18.8■□□□□ 0.6
CTDSPL2-209ENST00000560620 PRAG1Q86YV5 1406 aa18.8■□□□□ 0.6
CTDSPL2-209ENST00000560620 ABCC11Q96J66 1382 aa18.8■□□□□ 0.6
CTDSPL2-209ENST00000560620 BRINP3Q76B58 766 aa18.79■□□□□ 0.6
CTDSPL2-209ENST00000560620 MST1RQ04912 1400 aa18.79■□□□□ 0.6
CTDSPL2-209ENST00000560620 NEUROD1Q13562 356 aa18.78■□□□□ 0.6
CTDSPL2-209ENST00000560620 MED1Q15648 1581 aaPredicted RBP18.77■□□□□ 0.6
CTDSPL2-209ENST00000560620 TECPR2O15040 1411 aa18.77■□□□□ 0.6
CTDSPL2-209ENST00000560620 PHF23Q9BUL5 403 aaPredicted RBP18.77■□□□□ 0.6
CTDSPL2-209ENST00000560620 KNDC1Q76NI1 1749 aa18.77■□□□□ 0.59
CTDSPL2-209ENST00000560620 SAFB2Q14151 953 aaKnown RBP eCLIP18.76■□□□□ 0.59
CTDSPL2-209ENST00000560620 SIN3AQ96ST3 1273 aa18.75■□□□□ 0.59
CTDSPL2-209ENST00000560620 POGKQ9P215 609 aa18.75■□□□□ 0.59
CTDSPL2-209ENST00000560620 TRAK1Q9UPV9 953 aa18.75■□□□□ 0.59
CTDSPL2-209ENST00000560620 PLEKHH1Q9ULM0 1364 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms