RNA–Protein interactions for RNA: ENST00000560615.5

TPM1-224, Transcript of tropomyosin 1, humanhuman

TSL 3

Gene TPM1, Length 570 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-224ENST00000560615 CHGAP10645 457 aaKnown RBP28.28■■■□□ 2.12
TPM1-224ENST00000560615 MED1Q15648 1581 aaPredicted RBP28.28■■■□□ 2.12
TPM1-224ENST00000560615 ITGAEP38570 1179 aa28.27■■■□□ 2.12
TPM1-224ENST00000560615 UNC13BO14795 1591 aa28.24■■■□□ 2.11
TPM1-224ENST00000560615 NUP155O75694 1391 aa28.24■■■□□ 2.11
TPM1-224ENST00000560615 PLEKHG1Q9ULL1 1385 aa28.24■■■□□ 2.11
TPM1-224ENST00000560615 RIMS2Q9UQ26 1411 aa28.23■■■□□ 2.11
TPM1-224ENST00000560615 NKTRP30414 1462 aaKnown RBP28.21■■■□□ 2.11
TPM1-224ENST00000560615 FAM135BQ49AJ0 1406 aa28.21■■■□□ 2.11
TPM1-224ENST00000560615 GCC2Q8IWJ2 1684 aa28.2■■■□□ 2.11
TPM1-224ENST00000560615 ZFYVE9O95405 1425 aa28.19■■■□□ 2.1
TPM1-224ENST00000560615 TBX22Q9Y458 520 aa28.19■■■□□ 2.1
TPM1-224ENST00000560615 MSH6P52701 1360 aa28.18■■■□□ 2.1
TPM1-224ENST00000560615 PPARGC1BQ86YN6 1023 aaKnown RBP28.17■■■□□ 2.1
TPM1-224ENST00000560615 TMEM131LA2VDJ0 1609 aa28.14■■■□□ 2.09
TPM1-224ENST00000560615 IQGAP3Q86VI3 1631 aa28.14■■■□□ 2.09
TPM1-224ENST00000560615 RBM33Q96EV2 1170 aaKnown RBP28.13■■■□□ 2.09
TPM1-224ENST00000560615 NWD1Q149M9 1564 aa28.12■■■□□ 2.09
TPM1-224ENST00000560615 XIRP1Q702N8 1843 aaKnown RBP28.11■■■□□ 2.09
TPM1-224ENST00000560615 E9PCH4 1651 aa28.1■■■□□ 2.09
TPM1-224ENST00000560615 C14orf37Q86TY3 774 aa28.09■■■□□ 2.09
TPM1-224ENST00000560615 NCOA3Q9Y6Q9 1424 aa28.09■■■□□ 2.09
TPM1-224ENST00000560615 SLAIN2Q9P270 581 aa28.08■■■□□ 2.09
TPM1-224ENST00000560615 PIK3R4Q99570 1358 aa28.08■■■□□ 2.09
TPM1-224ENST00000560615 NUTM2DQ5VT03 806 aaPredicted RBP28.07■■■□□ 2.08
TPM1-224ENST00000560615 DIP2AQ14689 1571 aa28.03■■■□□ 2.08
TPM1-224ENST00000560615 ZNF326Q5BKZ1 582 aaKnown RBP28.02■■■□□ 2.08
TPM1-224ENST00000560615 MYO5BQ9ULV0 1848 aa28.02■■■□□ 2.08
TPM1-224ENST00000560615 ADAMTS13Q76LX8 1427 aa28.01■■■□□ 2.07
TPM1-224ENST00000560615 CADPS2Q86UW7 1296 aa28■■■□□ 2.07
TPM1-224ENST00000560615 CHD2O14647 1828 aaKnown RBP27.99■■■□□ 2.07
TPM1-224ENST00000560615 ATF3P18847 181 aa27.99■■■□□ 2.07
TPM1-224ENST00000560615 C19orf44Q9H6X5 657 aa27.99■■■□□ 2.07
TPM1-224ENST00000560615 ROBO1Q9Y6N7 1651 aa27.99■■■□□ 2.07
TPM1-224ENST00000560615 RRBP1Q9P2E9 1410 aaKnown RBP27.99■■■□□ 2.07
TPM1-224ENST00000560615 AMOTL2Q9Y2J4 779 aa27.97■■■□□ 2.07
TPM1-224ENST00000560615 TRPM2O94759 1503 aa27.96■■■□□ 2.07
TPM1-224ENST00000560615 JCADQ9P266 1359 aa27.92■■■□□ 2.06
TPM1-224ENST00000560615 TRIM52Q96A61 297 aa27.91■■■□□ 2.06
TPM1-224ENST00000560615 NAIPQ13075 1403 aa27.89■■■□□ 2.06
TPM1-224ENST00000560615 SPHKAPQ2M3C7 1700 aa27.88■■■□□ 2.05
TPM1-224ENST00000560615 RGS17Q9UGC6 210 aaPredicted RBP27.88■■■□□ 2.05
TPM1-224ENST00000560615 PHLPP1O60346 1717 aa27.84■■■□□ 2.05
TPM1-224ENST00000560615 SETBP1Q9Y6X0 1596 aa27.83■■■□□ 2.05
TPM1-224ENST00000560615 VGFO15240 615 aaPredicted RBP27.83■■■□□ 2.05
TPM1-224ENST00000560615 PTPRUQ92729 1446 aa27.83■■■□□ 2.05
TPM1-224ENST00000560615 SLC4A1APQ9BWU0 796 aaKnown RBP27.82■■■□□ 2.04
TPM1-224ENST00000560615 SPATA31A6Q5VVP1 1343 aa27.82■■■□□ 2.04
TPM1-224ENST00000560615 HFM1A2PYH4 1435 aa27.82■■■□□ 2.04
TPM1-224ENST00000560615 DCCP43146 1447 aa27.82■■■□□ 2.04
TPM1-224ENST00000560615 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.78■■■□□ 2.04
TPM1-224ENST00000560615 RPGRIP1LQ68CZ1 1315 aa27.78■■■□□ 2.04
TPM1-224ENST00000560615 METP08581 1390 aa27.77■■■□□ 2.04
TPM1-224ENST00000560615 MEX3CQ5U5Q3 659 aaKnown RBP27.77■■■□□ 2.04
TPM1-224ENST00000560615 POTEAQ6S8J7 498 aa27.76■■■□□ 2.03
TPM1-224ENST00000560615 CLTCL1P53675 1640 aa27.75■■■□□ 2.03
TPM1-224ENST00000560615 BRINP3Q76B58 766 aa27.75■■■□□ 2.03
TPM1-224ENST00000560615 NEXMIFQ5QGS0 1516 aa27.73■■■□□ 2.03
TPM1-224ENST00000560615 NRXN3Q9Y4C0 1643 aa27.73■■■□□ 2.03
TPM1-224ENST00000560615 COL16A1Q07092 1604 aaPredicted RBP27.72■■■□□ 2.03
TPM1-224ENST00000560615 AHDC1Q5TGY3 1603 aaPredicted RBP27.72■■■□□ 2.03
TPM1-224ENST00000560615 XRN1Q8IZH2 1706 aaKnown RBP27.71■■■□□ 2.03
TPM1-224ENST00000560615 KIF1BO60333 1816 aa27.7■■■□□ 2.02
TPM1-224ENST00000560615 ZNF772Q68DY9 489 aaPredicted RBP27.7■■■□□ 2.02
TPM1-224ENST00000560615 ACIN1Q9UKV3 1341 aaKnown RBP27.67■■■□□ 2.02
TPM1-224ENST00000560615 ADGRL3Q9HAR2 1447 aa27.67■■■□□ 2.02
TPM1-224ENST00000560615 LRRC59Q96AG4 307 aaKnown RBP27.67■■■□□ 2.02
TPM1-224ENST00000560615 MST1RQ04912 1400 aa27.66■■■□□ 2.02
TPM1-224ENST00000560615 ASXL1Q8IXJ9 1541 aa27.63■■■□□ 2.01
TPM1-224ENST00000560615 PTCH1Q13635 1447 aa27.61■■■□□ 2.01
TPM1-224ENST00000560615 NUTM2BA6NNL0 878 aaPredicted RBP27.61■■■□□ 2.01
TPM1-224ENST00000560615 NUTM2EB1AL46 878 aaPredicted RBP27.61■■■□□ 2.01
TPM1-224ENST00000560615 NUTM2AQ8IVF1 878 aaPredicted RBP27.61■■■□□ 2.01
TPM1-224ENST00000560615 CCDC144AA2RUR9 1427 aa27.6■■■□□ 2.01
TPM1-224ENST00000560615 SETD5Q9C0A6 1442 aa27.6■■■□□ 2.01
TPM1-224ENST00000560615 SHPRHQ149N8 1683 aa27.59■■■□□ 2.01
TPM1-224ENST00000560615 LRP6O75581 1613 aa27.58■■■□□ 2.01
TPM1-224ENST00000560615 FOXD1Q16676 465 aa27.56■■■□□ 2
TPM1-224ENST00000560615 MPHOSPH9Q99550 1183 aa27.56■■■□□ 2
TPM1-224ENST00000560615 ROBO2Q9HCK4 1378 aa27.54■■■□□ 2
TPM1-224ENST00000560615 C1orf167Q5SNV9 1468 aa27.53■■■□□ 2
TPM1-224ENST00000560615 PRAG1Q86YV5 1406 aa27.53■■■□□ 2
TPM1-224ENST00000560615 RGL3Q3MIN7 710 aa27.53■■■□□ 2
TPM1-224ENST00000560615 ANKRD30BQ9BXX2 1392 aa27.52■■■□□ 2
TPM1-224ENST00000560615 RXRBP28702 533 aa27.52■■■□□ 2
TPM1-224ENST00000560615 NHSL1Q5SYE7 1610 aa27.49■■□□□ 1.99
TPM1-224ENST00000560615 NALCNQ8IZF0 1738 aa27.49■■□□□ 1.99
TPM1-224ENST00000560615 DDX17Q92841 729 aaKnown RBP27.48■■□□□ 1.99
TPM1-224ENST00000560615 PNPLA6Q8IY17 1366 aa27.47■■□□□ 1.99
TPM1-224ENST00000560615 AFF2P51816 1311 aa27.46■■□□□ 1.99
TPM1-224ENST00000560615 ADGRF5Q8IZF2 1346 aa27.46■■□□□ 1.99
TPM1-224ENST00000560615 PPLO60437 1756 aa27.46■■□□□ 1.99
TPM1-224ENST00000560615 ORAI2Q96SN7 254 aa27.46■■□□□ 1.99
TPM1-224ENST00000560615 C8orf37Q96NL8 207 aa27.44■■□□□ 1.98
TPM1-224ENST00000560615 SETD1AO15047 1707 aaKnown RBP27.44■■□□□ 1.98
TPM1-224ENST00000560615 SOS2Q07890 1332 aaPredicted RBP27.43■■□□□ 1.98
TPM1-224ENST00000560615 STK26Q9P289 416 aa27.43■■□□□ 1.98
TPM1-224ENST00000560615 SPATA31E1Q6ZUB1 1445 aa27.42■■□□□ 1.98
TPM1-224ENST00000560615 ESCO1Q5FWF5 840 aa27.41■■□□□ 1.98
TPM1-224ENST00000560615 NPHP3Q7Z494 1330 aa27.41■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 101.5 ms