RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 DMRT2Q9Y5R5 561 aa14.65□□□□□ -0.06
USP3-216ENST00000559873 ZFYVE9O95405 1425 aa14.65□□□□□ -0.06
USP3-216ENST00000559873 SPATA31E1Q6ZUB1 1445 aa14.65□□□□□ -0.06
USP3-216ENST00000559873 CLSPNQ9HAW4 1339 aa14.64□□□□□ -0.07
USP3-216ENST00000559873 TXNDC2Q86VQ3 553 aa14.63□□□□□ -0.07
USP3-216ENST00000559873 MED14O60244 1454 aa14.63□□□□□ -0.07
USP3-216ENST00000559873 NEXMIFQ5QGS0 1516 aa14.62□□□□□ -0.07
USP3-216ENST00000559873 NPHP4O75161 1426 aaPredicted RBP14.62□□□□□ -0.07
USP3-216ENST00000559873 IQGAP1P46940 1657 aa14.61□□□□□ -0.07
USP3-216ENST00000559873 PLEKHG1Q9ULL1 1385 aa14.6□□□□□ -0.07
USP3-216ENST00000559873 STRCQ7RTU9 1775 aa14.6□□□□□ -0.07
USP3-216ENST00000559873 CCER1Q8TC90 406 aaPredicted RBP14.6□□□□□ -0.07
USP3-216ENST00000559873 NCKAP5LQ9HCH0 1330 aa14.6□□□□□ -0.07
USP3-216ENST00000559873 MYOM2P54296 1465 aa14.59□□□□□ -0.07
USP3-216ENST00000559873 VGFO15240 615 aaPredicted RBP14.59□□□□□ -0.07
USP3-216ENST00000559873 RGL3Q3MIN7 710 aa14.59□□□□□ -0.07
USP3-216ENST00000559873 PPLO60437 1756 aa14.59□□□□□ -0.07
USP3-216ENST00000559873 LTKP29376 864 aa14.58□□□□□ -0.08
USP3-216ENST00000559873 BCANQ96GW7 911 aa14.58□□□□□ -0.08
USP3-216ENST00000559873 STAC3Q96MF2 364 aa14.58□□□□□ -0.08
USP3-216ENST00000559873 IFT172Q9UG01 1749 aa14.58□□□□□ -0.08
USP3-216ENST00000559873 DIP2AQ14689 1571 aa14.57□□□□□ -0.08
USP3-216ENST00000559873 TONSLQ96HA7 1378 aa14.57□□□□□ -0.08
USP3-216ENST00000559873 SETBP1Q9Y6X0 1596 aa14.56□□□□□ -0.08
USP3-216ENST00000559873 NEUROD1Q13562 356 aa14.55□□□□□ -0.08
USP3-216ENST00000559873 NUTM2DQ5VT03 806 aaPredicted RBP14.54□□□□□ -0.08
USP3-216ENST00000559873 SIN3AQ96ST3 1273 aa14.54□□□□□ -0.08
USP3-216ENST00000559873 NRXN1Q9ULB1 1477 aa14.52□□□□□ -0.08
USP3-216ENST00000559873 PIK3C2GO75747 1445 aa14.52□□□□□ -0.08
USP3-216ENST00000559873 DCAF11Q8TEB1 546 aa14.52□□□□□ -0.09
USP3-216ENST00000559873 LAMC1P11047 1609 aa14.52□□□□□ -0.09
USP3-216ENST00000559873 ADAMTS13Q76LX8 1427 aa14.5□□□□□ -0.09
USP3-216ENST00000559873 PIK3R4Q99570 1358 aa14.5□□□□□ -0.09
USP3-216ENST00000559873 NRXN3Q9Y4C0 1643 aa14.5□□□□□ -0.09
USP3-216ENST00000559873 TIMELESSQ9UNS1 1208 aa14.49□□□□□ -0.09
USP3-216ENST00000559873 TBX22Q9Y458 520 aa14.49□□□□□ -0.09
USP3-216ENST00000559873 ADGRF5Q8IZF2 1346 aa14.48□□□□□ -0.09
USP3-216ENST00000559873 SLC26A8Q96RN1 970 aa14.48□□□□□ -0.09
USP3-216ENST00000559873 L3MBTL2Q969R5 705 aa14.47□□□□□ -0.09
USP3-216ENST00000559873 KDM2AQ9Y2K7 1162 aa14.47□□□□□ -0.09
USP3-216ENST00000559873 CPS1P31327 1500 aa14.46□□□□□ -0.09
USP3-216ENST00000559873 ALKQ9UM73 1620 aa14.46□□□□□ -0.09
USP3-216ENST00000559873 SENP3Q9H4L4 574 aaPredicted RBP14.46□□□□□ -0.09
USP3-216ENST00000559873 PRAG1Q86YV5 1406 aa14.46□□□□□ -0.09
USP3-216ENST00000559873 NWD1Q149M9 1564 aa14.46□□□□□ -0.09
USP3-216ENST00000559873 NKTRP30414 1462 aaKnown RBP14.45□□□□□ -0.1
USP3-216ENST00000559873 SETD1AO15047 1707 aaKnown RBP14.44□□□□□ -0.1
USP3-216ENST00000559873 KIAA1210Q9ULL0 1709 aa14.44□□□□□ -0.1
USP3-216ENST00000559873 ZNF335Q9H4Z2 1342 aaPredicted RBP14.43□□□□□ -0.1
USP3-216ENST00000559873 KCNA6P17658 529 aa14.43□□□□□ -0.1
USP3-216ENST00000559873 C14orf93Q9H972 538 aaKnown RBP14.43□□□□□ -0.1
USP3-216ENST00000559873 METP08581 1390 aa14.41□□□□□ -0.1
USP3-216ENST00000559873 CHD2O14647 1828 aaKnown RBP14.41□□□□□ -0.1
USP3-216ENST00000559873 XRN1Q8IZH2 1706 aaKnown RBP14.41□□□□□ -0.1
USP3-216ENST00000559873 LTBP4Q8N2S1 1624 aa14.41□□□□□ -0.1
USP3-216ENST00000559873 ASXL1Q8IXJ9 1541 aa14.4□□□□□ -0.1
USP3-216ENST00000559873 PTCH1Q13635 1447 aa14.4□□□□□ -0.1
USP3-216ENST00000559873 LRPPRCP42704 1394 aaKnown RBP14.39□□□□□ -0.11
USP3-216ENST00000559873 CFAP70Q5T0N1 1121 aa14.39□□□□□ -0.11
USP3-216ENST00000559873 AMOTL2Q9Y2J4 779 aa14.39□□□□□ -0.11
USP3-216ENST00000559873 YTHDC2Q9H6S0 1430 aaKnown RBP14.39□□□□□ -0.11
USP3-216ENST00000559873 ADGRB1O14514 1584 aa14.39□□□□□ -0.11
USP3-216ENST00000559873 KNDC1Q76NI1 1749 aa14.38□□□□□ -0.11
USP3-216ENST00000559873 TECPR2O15040 1411 aa14.38□□□□□ -0.11
USP3-216ENST00000559873 IQSEC2Q5JU85 1478 aa14.38□□□□□ -0.11
USP3-216ENST00000559873 TRPM1Q7Z4N2 1603 aa14.37□□□□□ -0.11
USP3-216ENST00000559873 PTPRUQ92729 1446 aa14.37□□□□□ -0.11
USP3-216ENST00000559873 RALGAPBQ86X10 1494 aa14.37□□□□□ -0.11
USP3-216ENST00000559873 ROCK2O75116 1388 aaKnown RBP14.36□□□□□ -0.11
USP3-216ENST00000559873 ABCC11Q96J66 1382 aa14.36□□□□□ -0.11
USP3-216ENST00000559873 STRCP1A6NGW2 1772 aa14.36□□□□□ -0.11
USP3-216ENST00000559873 LRRC7Q96NW7 1537 aa14.36□□□□□ -0.11
USP3-216ENST00000559873 DLC1Q96QB1 1528 aa14.36□□□□□ -0.11
USP3-216ENST00000559873 NCOA3Q9Y6Q9 1424 aa14.34□□□□□ -0.11
USP3-216ENST00000559873 TMEM132EQ6IEE7 984 aa14.34□□□□□ -0.11
USP3-216ENST00000559873 PROSER2Q86WR7 435 aaPredicted RBP14.34□□□□□ -0.11
USP3-216ENST00000559873 TMEM94Q12767 1356 aa14.34□□□□□ -0.11
USP3-216ENST00000559873 EIF3AQ14152 1382 aaKnown RBP14.34□□□□□ -0.11
USP3-216ENST00000559873 FAM135BQ49AJ0 1406 aa14.33□□□□□ -0.11
USP3-216ENST00000559873 STK26Q9P289 416 aa14.33□□□□□ -0.12
USP3-216ENST00000559873 GPRASP1Q5JY77 1395 aa14.33□□□□□ -0.12
USP3-216ENST00000559873 C14orf37Q86TY3 774 aa14.32□□□□□ -0.12
USP3-216ENST00000559873 ROBO2Q9HCK4 1378 aa14.32□□□□□ -0.12
USP3-216ENST00000559873 NBPF8Q3BBV2 869 aa14.31□□□□□ -0.12
USP3-216ENST00000559873 CERKQ8TCT0 537 aa14.31□□□□□ -0.12
USP3-216ENST00000559873 SIRT1Q96EB6 747 aa14.31□□□□□ -0.12
USP3-216ENST00000559873 MSH6P52701 1360 aa14.31□□□□□ -0.12
USP3-216ENST00000559873 CARD11Q9BXL7 1154 aa14.3□□□□□ -0.12
USP3-216ENST00000559873 ADGRL3Q9HAR2 1447 aa14.3□□□□□ -0.12
USP3-216ENST00000559873 NBPF1Q3BBV0 1214 aa14.29□□□□□ -0.12
USP3-216ENST00000559873 POGKQ9P215 609 aa14.29□□□□□ -0.12
USP3-216ENST00000559873 TRAK1Q9UPV9 953 aa14.29□□□□□ -0.12
USP3-216ENST00000559873 DCCP43146 1447 aa14.29□□□□□ -0.12
USP3-216ENST00000559873 ARHGEF28Q8N1W1 1705 aaKnown RBP14.29□□□□□ -0.12
USP3-216ENST00000559873 PRAM1Q96QH2 718 aa14.26□□□□□ -0.13
USP3-216ENST00000559873 NALCNQ8IZF0 1738 aa14.26□□□□□ -0.13
USP3-216ENST00000559873 CDC42BPGQ6DT37 1551 aa14.26□□□□□ -0.13
USP3-216ENST00000559873 XIRP1Q702N8 1843 aaKnown RBP14.25□□□□□ -0.13
USP3-216ENST00000559873 CENPJQ9HC77 1338 aaPredicted RBP14.25□□□□□ -0.13
USP3-216ENST00000559873 ZEB1P37275 1124 aaPredicted RBP14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 179 ms