RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 POLR1AO95602 1720 aaPredicted RBP17.62■□□□□ 0.41
USP3-213ENST00000559711 CCER2I3L3R5 266 aa17.61■□□□□ 0.41
USP3-213ENST00000559711 TESK2Q96S53 571 aa17.61■□□□□ 0.41
USP3-213ENST00000559711 IFT172Q9UG01 1749 aa17.61■□□□□ 0.41
USP3-213ENST00000559711 KIAA1210Q9ULL0 1709 aa17.6■□□□□ 0.41
USP3-213ENST00000559711 PREX1Q8TCU6 1659 aa17.6■□□□□ 0.41
USP3-213ENST00000559711 CFAP70Q5T0N1 1121 aa17.6■□□□□ 0.41
USP3-213ENST00000559711 CFAP65Q6ZU64 1925 aaKnown RBP17.6■□□□□ 0.41
USP3-213ENST00000559711 SCAF11Q99590 1463 aaKnown RBP17.59■□□□□ 0.41
USP3-213ENST00000559711 VGFO15240 615 aaPredicted RBP17.58■□□□□ 0.41
USP3-213ENST00000559711 PIK3C2GO75747 1445 aa17.58■□□□□ 0.4
USP3-213ENST00000559711 ESF1Q9H501 851 aaKnown RBP17.58■□□□□ 0.4
USP3-213ENST00000559711 C14orf93Q9H972 538 aaKnown RBP17.58■□□□□ 0.4
USP3-213ENST00000559711 ZFYVE9O95405 1425 aa17.57■□□□□ 0.4
USP3-213ENST00000559711 ZMYM3Q14202 1370 aa17.57■□□□□ 0.4
USP3-213ENST00000559711 SPATA31D1Q6ZQQ2 1576 aa17.57■□□□□ 0.4
USP3-213ENST00000559711 CLTCQ00610 1675 aaKnown RBP17.57■□□□□ 0.4
USP3-213ENST00000559711 CENPBP07199 599 aaPredicted RBP17.56■□□□□ 0.4
USP3-213ENST00000559711 PPLO60437 1756 aa17.55■□□□□ 0.4
USP3-213ENST00000559711 NEXMIFQ5QGS0 1516 aa17.55■□□□□ 0.4
USP3-213ENST00000559711 YTHDC1Q96MU7 727 aaKnown RBP17.55■□□□□ 0.4
USP3-213ENST00000559711 IQGAP1P46940 1657 aa17.54■□□□□ 0.4
USP3-213ENST00000559711 TMF1P82094 1093 aa17.54■□□□□ 0.4
USP3-213ENST00000559711 TMEM131LA2VDJ0 1609 aa17.54■□□□□ 0.4
USP3-213ENST00000559711 EIF3AQ14152 1382 aaKnown RBP17.53■□□□□ 0.4
USP3-213ENST00000559711 POLR3GLQ9BT43 218 aa17.53■□□□□ 0.4
USP3-213ENST00000559711 DISP3Q9P2K9 1392 aa17.52■□□□□ 0.4
USP3-213ENST00000559711 SETBP1Q9Y6X0 1596 aa17.52■□□□□ 0.4
USP3-213ENST00000559711 PRKRIP1Q9H875 184 aaPredicted RBP17.52■□□□□ 0.39
USP3-213ENST00000559711 SLC24A1O60721 1099 aa17.51■□□□□ 0.39
USP3-213ENST00000559711 ADGRB1O14514 1584 aa17.48■□□□□ 0.39
USP3-213ENST00000559711 STAG3Q9UJ98 1225 aa17.48■□□□□ 0.39
USP3-213ENST00000559711 A2ML1A8K2U0 1454 aa17.48■□□□□ 0.39
USP3-213ENST00000559711 CDCA8Q53HL2 280 aa17.47■□□□□ 0.39
USP3-213ENST00000559711 NUTM2DQ5VT03 806 aaPredicted RBP17.47■□□□□ 0.39
USP3-213ENST00000559711 TNRQ92752 1358 aa17.46■□□□□ 0.38
USP3-213ENST00000559711 SBNO2Q9Y2G9 1366 aa17.45■□□□□ 0.38
USP3-213ENST00000559711 TMEM132EQ6IEE7 984 aa17.44■□□□□ 0.38
USP3-213ENST00000559711 PER1O15534 1290 aaPredicted RBP17.42■□□□□ 0.38
USP3-213ENST00000559711 CENPJQ9HC77 1338 aaPredicted RBP17.42■□□□□ 0.38
USP3-213ENST00000559711 TRAK1Q9UPV9 953 aa17.42■□□□□ 0.38
USP3-213ENST00000559711 RIMS2Q9UQ26 1411 aa17.41■□□□□ 0.38
USP3-213ENST00000559711 MYO3AQ8NEV4 1616 aa17.4■□□□□ 0.38
USP3-213ENST00000559711 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.4■□□□□ 0.38
USP3-213ENST00000559711 MYO5BQ9ULV0 1848 aa17.4■□□□□ 0.38
USP3-213ENST00000559711 KTN1Q86UP2 1357 aaKnown RBP17.39■□□□□ 0.37
USP3-213ENST00000559711 PANK3Q9H999 370 aa17.39■□□□□ 0.37
USP3-213ENST00000559711 HDGFP51858 240 aaKnown RBP17.37■□□□□ 0.37
USP3-213ENST00000559711 NLRP1Q9C000 1473 aa17.36■□□□□ 0.37
USP3-213ENST00000559711 CEBPAP49715 358 aaPredicted RBP17.36■□□□□ 0.37
USP3-213ENST00000559711 RALBP1Q15311 655 aa17.36■□□□□ 0.37
USP3-213ENST00000559711 CCDC184Q52MB2 194 aa17.36■□□□□ 0.37
USP3-213ENST00000559711 ASXL1Q8IXJ9 1541 aa17.35■□□□□ 0.37
USP3-213ENST00000559711 KDM5AP29375 1690 aaKnown RBP17.35■□□□□ 0.37
USP3-213ENST00000559711 ALKQ9UM73 1620 aa17.34■□□□□ 0.37
USP3-213ENST00000559711 PUS7Q96PZ0 661 aaKnown RBP17.34■□□□□ 0.37
USP3-213ENST00000559711 TMEM2Q9UHN6 1383 aa17.34■□□□□ 0.37
USP3-213ENST00000559711 YTHDC2Q9H6S0 1430 aaKnown RBP17.33■□□□□ 0.36
USP3-213ENST00000559711 MRS2Q9HD23 443 aa17.32■□□□□ 0.36
USP3-213ENST00000559711 PARD3Q8TEW0 1356 aa17.31■□□□□ 0.36
USP3-213ENST00000559711 STK26Q9P289 416 aa17.3■□□□□ 0.36
USP3-213ENST00000559711 PTPRMP28827 1452 aa17.3■□□□□ 0.36
USP3-213ENST00000559711 C3P01024 1663 aa17.3■□□□□ 0.36
USP3-213ENST00000559711 MYBBP1AQ9BQG0 1328 aaKnown RBP17.29■□□□□ 0.36
USP3-213ENST00000559711 FER1L4A9Z1Z3 1794 aa17.29■□□□□ 0.36
USP3-213ENST00000559711 SENP3Q9H4L4 574 aaPredicted RBP17.29■□□□□ 0.36
USP3-213ENST00000559711 LRPPRCP42704 1394 aaKnown RBP17.29■□□□□ 0.36
USP3-213ENST00000559711 UBR1Q8IWV7 1749 aa17.28■□□□□ 0.36
USP3-213ENST00000559711 CNGB1Q14028 1251 aaPredicted RBP17.28■□□□□ 0.36
USP3-213ENST00000559711 KNSTRNQ9Y448 316 aa17.28■□□□□ 0.36
USP3-213ENST00000559711 EVC2Q86UK5 1308 aa17.28■□□□□ 0.36
USP3-213ENST00000559711 ARHGEF28Q8N1W1 1705 aaKnown RBP17.28■□□□□ 0.36
USP3-213ENST00000559711 QRICH2Q9H0J4 1663 aa17.27■□□□□ 0.36
USP3-213ENST00000559711 ABCC11Q96J66 1382 aa17.27■□□□□ 0.36
USP3-213ENST00000559711 BRD4O60885 1362 aaPredicted RBP17.26■□□□□ 0.35
USP3-213ENST00000559711 NPC1L1Q9UHC9 1359 aa17.26■□□□□ 0.35
USP3-213ENST00000559711 AMER1Q5JTC6 1135 aaPredicted RBP17.26■□□□□ 0.35
USP3-213ENST00000559711 PRAM1Q96QH2 718 aa17.26■□□□□ 0.35
USP3-213ENST00000559711 DLC1Q96QB1 1528 aa17.25■□□□□ 0.35
USP3-213ENST00000559711 MYOM1P52179 1685 aa17.25■□□□□ 0.35
USP3-213ENST00000559711 LTKP29376 864 aa17.25■□□□□ 0.35
USP3-213ENST00000559711 NRXN3Q9Y4C0 1643 aa17.24■□□□□ 0.35
USP3-213ENST00000559711 NLRP13Q86W25 1043 aa17.24■□□□□ 0.35
USP3-213ENST00000559711 THEMISQ8N1K5 641 aaPredicted RBP17.24■□□□□ 0.35
USP3-213ENST00000559711 POGKQ9P215 609 aa17.24■□□□□ 0.35
USP3-213ENST00000559711 ARHGAP23Q9P227 1491 aa17.24■□□□□ 0.35
USP3-213ENST00000559711 METP08581 1390 aa17.24■□□□□ 0.35
USP3-213ENST00000559711 PLEKHG1Q9ULL1 1385 aa17.24■□□□□ 0.35
USP3-213ENST00000559711 SLIT1O75093 1534 aa17.23■□□□□ 0.35
USP3-213ENST00000559711 TULP4Q9NRJ4 1543 aa17.23■□□□□ 0.35
USP3-213ENST00000559711 CC2D1BQ5T0F9 858 aaKnown RBP17.23■□□□□ 0.35
USP3-213ENST00000559711 TMC1Q8TDI8 760 aa17.23■□□□□ 0.35
USP3-213ENST00000559711 SIRT1Q96EB6 747 aa17.23■□□□□ 0.35
USP3-213ENST00000559711 SETD1AO15047 1707 aaKnown RBP17.23■□□□□ 0.35
USP3-213ENST00000559711 TXNDC2Q86VQ3 553 aa17.23■□□□□ 0.35
USP3-213ENST00000559711 FAM9BQ8IZU0 186 aa17.22■□□□□ 0.35
USP3-213ENST00000559711 PNISRQ8TF01 805 aaKnown RBP17.22■□□□□ 0.35
USP3-213ENST00000559711 CARD14Q9BXL6 1004 aa17.22■□□□□ 0.35
USP3-213ENST00000559711 EID1Q9Y6B2 187 aa17.22■□□□□ 0.35
USP3-213ENST00000559711 SAFB2Q14151 953 aaKnown RBP eCLIP17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms