RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 ZFYVE9O95405 1425 aa20.36■□□□□ 0.85
TPM1-220ENST00000559556 FAM50AQ14320 339 aaKnown RBP20.34■□□□□ 0.85
TPM1-220ENST00000559556 SLC52A1Q9NWF4 448 aa20.33■□□□□ 0.85
TPM1-220ENST00000559556 PHLPP1O60346 1717 aa20.33■□□□□ 0.84
TPM1-220ENST00000559556 DIP2AQ14689 1571 aa20.31■□□□□ 0.84
TPM1-220ENST00000559556 FAM135BQ49AJ0 1406 aa20.31■□□□□ 0.84
TPM1-220ENST00000559556 TMEM94Q12767 1356 aa20.31■□□□□ 0.84
TPM1-220ENST00000559556 KCNA6P17658 529 aa20.29■□□□□ 0.84
TPM1-220ENST00000559556 ROCK1Q13464 1354 aa20.29■□□□□ 0.84
TPM1-220ENST00000559556 PLEKHG1Q9ULL1 1385 aa20.28■□□□□ 0.84
TPM1-220ENST00000559556 RIMS2Q9UQ26 1411 aa20.27■□□□□ 0.84
TPM1-220ENST00000559556 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.27■□□□□ 0.84
TPM1-220ENST00000559556 SLC26A8Q96RN1 970 aa20.27■□□□□ 0.84
TPM1-220ENST00000559556 PHF23Q9BUL5 403 aaPredicted RBP20.26■□□□□ 0.83
TPM1-220ENST00000559556 SENP3Q9H4L4 574 aaPredicted RBP20.26■□□□□ 0.83
TPM1-220ENST00000559556 KIF1BO60333 1816 aa20.25■□□□□ 0.83
TPM1-220ENST00000559556 NRXN3Q9Y4C0 1643 aa20.23■□□□□ 0.83
TPM1-220ENST00000559556 PROSER2Q86WR7 435 aaPredicted RBP20.22■□□□□ 0.83
TPM1-220ENST00000559556 COL16A1Q07092 1604 aaPredicted RBP20.21■□□□□ 0.83
TPM1-220ENST00000559556 XRN1Q8IZH2 1706 aaKnown RBP20.21■□□□□ 0.83
TPM1-220ENST00000559556 TRPM2O94759 1503 aa20.2■□□□□ 0.82
TPM1-220ENST00000559556 MSH6P52701 1360 aa20.2■□□□□ 0.82
TPM1-220ENST00000559556 SETD1AO15047 1707 aaKnown RBP20.19■□□□□ 0.82
TPM1-220ENST00000559556 ADAMTS13Q76LX8 1427 aa20.19■□□□□ 0.82
TPM1-220ENST00000559556 SHPRHQ149N8 1683 aa20.18■□□□□ 0.82
TPM1-220ENST00000559556 PPP1R15AO75807 674 aaPredicted RBP20.16■□□□□ 0.82
TPM1-220ENST00000559556 HDGFP51858 240 aaKnown RBP20.16■□□□□ 0.82
TPM1-220ENST00000559556 RBM33Q96EV2 1170 aaKnown RBP20.16■□□□□ 0.82
TPM1-220ENST00000559556 BCANQ96GW7 911 aa20.16■□□□□ 0.82
TPM1-220ENST00000559556 NCOA3Q9Y6Q9 1424 aa20.16■□□□□ 0.82
TPM1-220ENST00000559556 SETBP1Q9Y6X0 1596 aa20.16■□□□□ 0.82
TPM1-220ENST00000559556 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.15■□□□□ 0.82
TPM1-220ENST00000559556 CLTCL1P53675 1640 aa20.15■□□□□ 0.82
TPM1-220ENST00000559556 AHDC1Q5TGY3 1603 aaPredicted RBP20.14■□□□□ 0.81
TPM1-220ENST00000559556 PIK3R4Q99570 1358 aa20.14■□□□□ 0.81
TPM1-220ENST00000559556 RGS17Q9UGC6 210 aaPredicted RBP20.14■□□□□ 0.81
TPM1-220ENST00000559556 NUP155O75694 1391 aa20.13■□□□□ 0.81
TPM1-220ENST00000559556 TBX22Q9Y458 520 aa20.13■□□□□ 0.81
TPM1-220ENST00000559556 NALCNQ8IZF0 1738 aa20.1■□□□□ 0.81
TPM1-220ENST00000559556 NHSL1Q5SYE7 1610 aa20.1■□□□□ 0.81
TPM1-220ENST00000559556 CHGAP10645 457 aaKnown RBP20.09■□□□□ 0.81
TPM1-220ENST00000559556 SLAIN2Q9P270 581 aa20.09■□□□□ 0.81
TPM1-220ENST00000559556 NEXMIFQ5QGS0 1516 aa20.08■□□□□ 0.81
TPM1-220ENST00000559556 PPLO60437 1756 aa20.07■□□□□ 0.8
TPM1-220ENST00000559556 PTPRUQ92729 1446 aa20.07■□□□□ 0.8
TPM1-220ENST00000559556 JCADQ9P266 1359 aa20.06■□□□□ 0.8
TPM1-220ENST00000559556 DCCP43146 1447 aa20.05■□□□□ 0.8
TPM1-220ENST00000559556 RRBP1Q9P2E9 1410 aaKnown RBP20.05■□□□□ 0.8
TPM1-220ENST00000559556 ITGAEP38570 1179 aa20.05■□□□□ 0.8
TPM1-220ENST00000559556 NUTM2DQ5VT03 806 aaPredicted RBP20.05■□□□□ 0.8
TPM1-220ENST00000559556 LRP6O75581 1613 aa20.01■□□□□ 0.79
TPM1-220ENST00000559556 POTEAQ6S8J7 498 aa20■□□□□ 0.79
TPM1-220ENST00000559556 CADPS2Q86UW7 1296 aa20■□□□□ 0.79
TPM1-220ENST00000559556 C19orf44Q9H6X5 657 aa20■□□□□ 0.79
TPM1-220ENST00000559556 NAIPQ13075 1403 aa20■□□□□ 0.79
TPM1-220ENST00000559556 ASXL1Q8IXJ9 1541 aa19.99■□□□□ 0.79
TPM1-220ENST00000559556 C14orf37Q86TY3 774 aa19.99■□□□□ 0.79
TPM1-220ENST00000559556 LAMC1P11047 1609 aa19.98■□□□□ 0.79
TPM1-220ENST00000559556 PPARGC1BQ86YN6 1023 aaKnown RBP19.98■□□□□ 0.79
TPM1-220ENST00000559556 AMOTL2Q9Y2J4 779 aa19.98■□□□□ 0.79
TPM1-220ENST00000559556 IFT172Q9UG01 1749 aa19.98■□□□□ 0.79
TPM1-220ENST00000559556 ATF3P18847 181 aa19.96■□□□□ 0.79
TPM1-220ENST00000559556 SPATA31A6Q5VVP1 1343 aa19.95■□□□□ 0.78
TPM1-220ENST00000559556 MST1RQ04912 1400 aa19.94■□□□□ 0.78
TPM1-220ENST00000559556 ADGRL3Q9HAR2 1447 aa19.94■□□□□ 0.78
TPM1-220ENST00000559556 METP08581 1390 aa19.94■□□□□ 0.78
TPM1-220ENST00000559556 HFM1A2PYH4 1435 aa19.93■□□□□ 0.78
TPM1-220ENST00000559556 ZNF326Q5BKZ1 582 aaKnown RBP19.92■□□□□ 0.78
TPM1-220ENST00000559556 BRINP3Q76B58 766 aa19.91■□□□□ 0.78
TPM1-220ENST00000559556 PTCH1Q13635 1447 aa19.89■□□□□ 0.77
TPM1-220ENST00000559556 PRAG1Q86YV5 1406 aa19.89■□□□□ 0.77
TPM1-220ENST00000559556 SETD5Q9C0A6 1442 aa19.89■□□□□ 0.77
TPM1-220ENST00000559556 MARF1Q9Y4F3 1742 aaKnown RBP19.89■□□□□ 0.77
TPM1-220ENST00000559556 KNDC1Q76NI1 1749 aa19.88■□□□□ 0.77
TPM1-220ENST00000559556 MEX3CQ5U5Q3 659 aaKnown RBP19.83■□□□□ 0.77
TPM1-220ENST00000559556 COL22A1Q8NFW1 1626 aaPredicted RBP19.82■□□□□ 0.76
TPM1-220ENST00000559556 CDC42BPGQ6DT37 1551 aa19.82■□□□□ 0.76
TPM1-220ENST00000559556 ZNF772Q68DY9 489 aaPredicted RBP19.81■□□□□ 0.76
TPM1-220ENST00000559556 RGPD8O14715 1765 aaPredicted RBP19.8■□□□□ 0.76
TPM1-220ENST00000559556 C1orf167Q5SNV9 1468 aa19.8■□□□□ 0.76
TPM1-220ENST00000559556 CDK12Q9NYV4 1490 aaPredicted RBP19.8■□□□□ 0.76
TPM1-220ENST00000559556 EP400Q96L91 3159 aa19.78■□□□□ 0.76
TPM1-220ENST00000559556 VGFO15240 615 aaPredicted RBP19.78■□□□□ 0.76
TPM1-220ENST00000559556 PNPLA6Q8IY17 1366 aa19.78■□□□□ 0.76
TPM1-220ENST00000559556 ROBO2Q9HCK4 1378 aa19.78■□□□□ 0.76
TPM1-220ENST00000559556 RPGRIP1LQ68CZ1 1315 aa19.77■□□□□ 0.76
TPM1-220ENST00000559556 FMN2Q9NZ56 1722 aa19.77■□□□□ 0.76
TPM1-220ENST00000559556 TRIM52Q96A61 297 aa19.76■□□□□ 0.75
TPM1-220ENST00000559556 LRRC59Q96AG4 307 aaKnown RBP19.76■□□□□ 0.75
TPM1-220ENST00000559556 SLC4A1APQ9BWU0 796 aaKnown RBP19.75■□□□□ 0.75
TPM1-220ENST00000559556 NUTM2BA6NNL0 878 aaPredicted RBP19.73■□□□□ 0.75
TPM1-220ENST00000559556 NUTM2EB1AL46 878 aaPredicted RBP19.73■□□□□ 0.75
TPM1-220ENST00000559556 NUTM2AQ8IVF1 878 aaPredicted RBP19.73■□□□□ 0.75
TPM1-220ENST00000559556 DDX17Q92841 729 aaKnown RBP19.73■□□□□ 0.75
TPM1-220ENST00000559556 AFF2P51816 1311 aa19.73■□□□□ 0.75
TPM1-220ENST00000559556 SPATA31E1Q6ZUB1 1445 aa19.72■□□□□ 0.75
TPM1-220ENST00000559556 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.72■□□□□ 0.75
TPM1-220ENST00000559556 KIF1AQ12756 1690 aa19.71■□□□□ 0.75
TPM1-220ENST00000559556 CCDC144AA2RUR9 1427 aa19.71■□□□□ 0.75
TPM1-220ENST00000559556 TECPR2O15040 1411 aa19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms