RNA–Protein interactions for RNA: ENST00000559511.5

SPG11-217, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 2

Gene SPG11, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-217ENST00000559511 KIAA1210Q9ULL0 1709 aa15.08■□□□□ 0
SPG11-217ENST00000559511 ZC3H13Q5T200 1668 aaKnown RBP15.08■□□□□ 0
SPG11-217ENST00000559511 STAC3Q96MF2 364 aa15.06■□□□□ 0
SPG11-217ENST00000559511 WASHC2CQ9Y4E1 1318 aa15.05■□□□□ -0
SPG11-217ENST00000559511 ADGRB3O60242 1522 aa15.04■□□□□ -0
SPG11-217ENST00000559511 KTN1Q86UP2 1357 aaKnown RBP15.04■□□□□ -0
SPG11-217ENST00000559511 PNISRQ8TF01 805 aaKnown RBP15.04■□□□□ -0
SPG11-217ENST00000559511 PPLO60437 1756 aa15.04■□□□□ -0
SPG11-217ENST00000559511 TSHZ2Q9NRE2 1034 aa15.04■□□□□ -0
SPG11-217ENST00000559511 MYOM2P54296 1465 aa15.03■□□□□ -0
SPG11-217ENST00000559511 IRX6P78412 446 aaPredicted RBP15.03■□□□□ -0
SPG11-217ENST00000559511 RALBP1Q15311 655 aa15.03■□□□□ -0
SPG11-217ENST00000559511 MYBBP1AQ9BQG0 1328 aaKnown RBP15.03■□□□□ -0
SPG11-217ENST00000559511 PER1O15534 1290 aaPredicted RBP15.02■□□□□ -0
SPG11-217ENST00000559511 TMC1Q8TDI8 760 aa15.02■□□□□ -0
SPG11-217ENST00000559511 PIK3C2BO00750 1634 aa15.02■□□□□ -0
SPG11-217ENST00000559511 BRD4O60885 1362 aaPredicted RBP15.02□□□□□ -0.01
SPG11-217ENST00000559511 SYNMO15061 1565 aa15.01□□□□□ -0.01
SPG11-217ENST00000559511 PARD3Q8TEW0 1356 aa15.01□□□□□ -0.01
SPG11-217ENST00000559511 NOS1P29475 1434 aa15□□□□□ -0.01
SPG11-217ENST00000559511 TMF1P82094 1093 aa15□□□□□ -0.01
SPG11-217ENST00000559511 REREQ9P2R6 1566 aa15□□□□□ -0.01
SPG11-217ENST00000559511 LRPPRCP42704 1394 aaKnown RBP14.99□□□□□ -0.01
SPG11-217ENST00000559511 ARHGAP31Q2M1Z3 1444 aa14.99□□□□□ -0.01
SPG11-217ENST00000559511 PREX1Q8TCU6 1659 aa14.98□□□□□ -0.01
SPG11-217ENST00000559511 NRXN1Q9ULB1 1477 aa14.98□□□□□ -0.01
SPG11-217ENST00000559511 SCAF11Q99590 1463 aaKnown RBP14.98□□□□□ -0.01
SPG11-217ENST00000559511 MYO5BQ9ULV0 1848 aa14.98□□□□□ -0.01
SPG11-217ENST00000559511 ADGRF5Q8IZF2 1346 aa14.98□□□□□ -0.01
SPG11-217ENST00000559511 PANK3Q9H999 370 aa14.97□□□□□ -0.01
SPG11-217ENST00000559511 SMG6Q86US8 1419 aaKnown RBP14.97□□□□□ -0.01
SPG11-217ENST00000559511 SENP3-EIF4A1A0A087X0R7 540 aa14.96□□□□□ -0.01
SPG11-217ENST00000559511 AGLP35573 1532 aa14.95□□□□□ -0.02
SPG11-217ENST00000559511 NLRP13Q86W25 1043 aa14.95□□□□□ -0.02
SPG11-217ENST00000559511 CHGAP10645 457 aaKnown RBP14.95□□□□□ -0.02
SPG11-217ENST00000559511 CC2D1BQ5T0F9 858 aaKnown RBP14.94□□□□□ -0.02
SPG11-217ENST00000559511 CFAP70Q5T0N1 1121 aa14.94□□□□□ -0.02
SPG11-217ENST00000559511 MYOM1P52179 1685 aa14.93□□□□□ -0.02
SPG11-217ENST00000559511 CLTCQ00610 1675 aaKnown RBP14.93□□□□□ -0.02
SPG11-217ENST00000559511 ARHGEF40Q8TER5 1519 aa14.92□□□□□ -0.02
SPG11-217ENST00000559511 SETBP1Q9Y6X0 1596 aa14.92□□□□□ -0.02
SPG11-217ENST00000559511 ERICH6BQ5W0A0 696 aa14.92□□□□□ -0.02
SPG11-217ENST00000559511 NUDCQ9Y266 331 aa14.92□□□□□ -0.02
SPG11-217ENST00000559511 MYO3AQ8NEV4 1616 aa14.91□□□□□ -0.02
SPG11-217ENST00000559511 NEXMIFQ5QGS0 1516 aa14.91□□□□□ -0.02
SPG11-217ENST00000559511 PIK3C2GO75747 1445 aa14.91□□□□□ -0.02
SPG11-217ENST00000559511 RPGRIP1LQ68CZ1 1315 aa14.9□□□□□ -0.02
SPG11-217ENST00000559511 TMEM131LA2VDJ0 1609 aa14.9□□□□□ -0.02
SPG11-217ENST00000559511 EIF3AQ14152 1382 aaKnown RBP14.9□□□□□ -0.02
SPG11-217ENST00000559511 KDM5AP29375 1690 aaKnown RBP14.9□□□□□ -0.02
SPG11-217ENST00000559511 IDI1Q13907 227 aa14.88□□□□□ -0.03
SPG11-217ENST00000559511 PPP4R2Q9NY27 417 aa14.87□□□□□ -0.03
SPG11-217ENST00000559511 ADGRB1O14514 1584 aa14.87□□□□□ -0.03
SPG11-217ENST00000559511 ERVK-7P63135 1459 aa14.86□□□□□ -0.03
SPG11-217ENST00000559511 CDCA8Q53HL2 280 aa14.86□□□□□ -0.03
SPG11-217ENST00000559511 SLC52A1Q9NWF4 448 aa14.86□□□□□ -0.03
SPG11-217ENST00000559511 C14orf93Q9H972 538 aaKnown RBP14.86□□□□□ -0.03
SPG11-217ENST00000559511 PPP6R1Q9UPN7 881 aa14.86□□□□□ -0.03
SPG11-217ENST00000559511 RNF123Q5XPI4 1314 aa14.86□□□□□ -0.03
SPG11-217ENST00000559511 QRICH2Q9H0J4 1663 aa14.85□□□□□ -0.03
SPG11-217ENST00000559511 FBXO31Q5XUX0 539 aaPredicted RBP14.85□□□□□ -0.03
SPG11-217ENST00000559511 AMER1Q5JTC6 1135 aaPredicted RBP14.84□□□□□ -0.03
SPG11-217ENST00000559511 KNSTRNQ9Y448 316 aa14.84□□□□□ -0.03
SPG11-217ENST00000559511 ASXL1Q8IXJ9 1541 aa14.83□□□□□ -0.03
SPG11-217ENST00000559511 BLMP54132 1417 aaPredicted RBP14.83□□□□□ -0.03
SPG11-217ENST00000559511 ARHGEF28Q8N1W1 1705 aaKnown RBP14.83□□□□□ -0.04
SPG11-217ENST00000559511 SPATA31D1Q6ZQQ2 1576 aa14.82□□□□□ -0.04
SPG11-217ENST00000559511 VGFO15240 615 aaPredicted RBP14.82□□□□□ -0.04
SPG11-217ENST00000559511 NUTM2DQ5VT03 806 aaPredicted RBP14.82□□□□□ -0.04
SPG11-217ENST00000559511 ZFYVE9O95405 1425 aa14.82□□□□□ -0.04
SPG11-217ENST00000559511 B4GALNT3Q6L9W6 998 aa14.81□□□□□ -0.04
SPG11-217ENST00000559511 SALL2Q9Y467 1007 aaPredicted RBP14.81□□□□□ -0.04
SPG11-217ENST00000559511 INSRP06213 1382 aa14.81□□□□□ -0.04
SPG11-217ENST00000559511 MLECQ14165 292 aa14.81□□□□□ -0.04
SPG11-217ENST00000559511 SBNO2Q9Y2G9 1366 aa14.8□□□□□ -0.04
SPG11-217ENST00000559511 PPP2R1AP30153 589 aa14.8□□□□□ -0.04
SPG11-217ENST00000559511 TMEM132EQ6IEE7 984 aa14.8□□□□□ -0.04
SPG11-217ENST00000559511 SLC24A1O60721 1099 aa14.79□□□□□ -0.04
SPG11-217ENST00000559511 TRAK1Q9UPV9 953 aa14.78□□□□□ -0.04
SPG11-217ENST00000559511 RBM19Q9Y4C8 960 aaKnown RBP14.78□□□□□ -0.04
SPG11-217ENST00000559511 CENPJQ9HC77 1338 aaPredicted RBP14.78□□□□□ -0.04
SPG11-217ENST00000559511 NPC1L1Q9UHC9 1359 aa14.78□□□□□ -0.04
SPG11-217ENST00000559511 PDE3BQ13370 1112 aa14.76□□□□□ -0.05
SPG11-217ENST00000559511 ADAMTS8Q9UP79 889 aa14.75□□□□□ -0.05
SPG11-217ENST00000559511 CDCA7LQ96GN5 454 aa14.75□□□□□ -0.05
SPG11-217ENST00000559511 CARD14Q9BXL6 1004 aa14.74□□□□□ -0.05
SPG11-217ENST00000559511 A2ML1A8K2U0 1454 aa14.74□□□□□ -0.05
SPG11-217ENST00000559511 ZMYM3Q14202 1370 aa14.73□□□□□ -0.05
SPG11-217ENST00000559511 ALKQ9UM73 1620 aa14.73□□□□□ -0.05
SPG11-217ENST00000559511 SETD1AO15047 1707 aaKnown RBP14.72□□□□□ -0.05
SPG11-217ENST00000559511 STAG3Q9UJ98 1225 aa14.72□□□□□ -0.05
SPG11-217ENST00000559511 RCAN3Q9UKA8 241 aa14.72□□□□□ -0.05
SPG11-217ENST00000559511 RRP1P56182 461 aaKnown RBP14.71□□□□□ -0.05
SPG11-217ENST00000559511 SENP3Q9H4L4 574 aaPredicted RBP14.71□□□□□ -0.05
SPG11-217ENST00000559511 ESF1Q9H501 851 aaKnown RBP14.71□□□□□ -0.06
SPG11-217ENST00000559511 TULP4Q9NRJ4 1543 aa14.7□□□□□ -0.06
SPG11-217ENST00000559511 WDR43Q15061 677 aaKnown RBP eCLIP14.7□□□□□ -0.06
SPG11-217ENST00000559511 PTPRMP28827 1452 aa14.69□□□□□ -0.06
SPG11-217ENST00000559511 RIMS2Q9UQ26 1411 aa14.68□□□□□ -0.06
SPG11-217ENST00000559511 UBR1Q8IWV7 1749 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms