RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 UGGT1Q9NYU2 1555 aa17.39■□□□□ 0.37
SHMT2-229ENST00000557348 NBPF1Q3BBV0 1214 aa17.39■□□□□ 0.37
SHMT2-229ENST00000557348 COL17A1Q9UMD9 1497 aaPredicted RBP17.37■□□□□ 0.37
SHMT2-229ENST00000557348 KTN1Q86UP2 1357 aaKnown RBP17.37■□□□□ 0.37
SHMT2-229ENST00000557348 IQGAP1P46940 1657 aa17.37■□□□□ 0.37
SHMT2-229ENST00000557348 TMF1P82094 1093 aa17.36■□□□□ 0.37
SHMT2-229ENST00000557348 CDCA8Q53HL2 280 aa17.36■□□□□ 0.37
SHMT2-229ENST00000557348 MROH2AA6NES4 1674 aa17.35■□□□□ 0.37
SHMT2-229ENST00000557348 SYNMO15061 1565 aa17.35■□□□□ 0.37
SHMT2-229ENST00000557348 SETBP1Q9Y6X0 1596 aa17.35■□□□□ 0.37
SHMT2-229ENST00000557348 PRKRIP1Q9H875 184 aaPredicted RBP17.34■□□□□ 0.37
SHMT2-229ENST00000557348 ANP32EQ9BTT0 268 aa17.33■□□□□ 0.37
SHMT2-229ENST00000557348 SUPT16HQ9Y5B9 1047 aaKnown RBP17.33■□□□□ 0.37
SHMT2-229ENST00000557348 PREX1Q8TCU6 1659 aa17.32■□□□□ 0.36
SHMT2-229ENST00000557348 ZFYVE9O95405 1425 aa17.32■□□□□ 0.36
SHMT2-229ENST00000557348 AEBP2Q6ZN18 517 aaPredicted RBP17.32■□□□□ 0.36
SHMT2-229ENST00000557348 TESK2Q96S53 571 aa17.32■□□□□ 0.36
SHMT2-229ENST00000557348 PPLO60437 1756 aa17.32■□□□□ 0.36
SHMT2-229ENST00000557348 PIK3C2GO75747 1445 aa17.31■□□□□ 0.36
SHMT2-229ENST00000557348 SIGLEC1Q9BZZ2 1709 aa17.31■□□□□ 0.36
SHMT2-229ENST00000557348 VGFO15240 615 aaPredicted RBP17.31■□□□□ 0.36
SHMT2-229ENST00000557348 ERVK-7P63135 1459 aa17.3■□□□□ 0.36
SHMT2-229ENST00000557348 CHGAP10645 457 aaKnown RBP17.3■□□□□ 0.36
SHMT2-229ENST00000557348 POLR3GLQ9BT43 218 aa17.29■□□□□ 0.36
SHMT2-229ENST00000557348 ADGRF5Q8IZF2 1346 aa17.28■□□□□ 0.36
SHMT2-229ENST00000557348 SBNO2Q9Y2G9 1366 aa17.28■□□□□ 0.36
SHMT2-229ENST00000557348 SPATA31D1Q6ZQQ2 1576 aa17.27■□□□□ 0.35
SHMT2-229ENST00000557348 ESF1Q9H501 851 aaKnown RBP17.26■□□□□ 0.35
SHMT2-229ENST00000557348 NEXMIFQ5QGS0 1516 aa17.26■□□□□ 0.35
SHMT2-229ENST00000557348 C14orf93Q9H972 538 aaKnown RBP17.26■□□□□ 0.35
SHMT2-229ENST00000557348 RALBP1Q15311 655 aa17.25■□□□□ 0.35
SHMT2-229ENST00000557348 MYO3AQ8NEV4 1616 aa17.25■□□□□ 0.35
SHMT2-229ENST00000557348 DISP3Q9P2K9 1392 aa17.24■□□□□ 0.35
SHMT2-229ENST00000557348 IDI1Q13907 227 aa17.24■□□□□ 0.35
SHMT2-229ENST00000557348 CFAP70Q5T0N1 1121 aa17.23■□□□□ 0.35
SHMT2-229ENST00000557348 CLTCQ00610 1675 aaKnown RBP17.23■□□□□ 0.35
SHMT2-229ENST00000557348 TMEM131LA2VDJ0 1609 aa17.23■□□□□ 0.35
SHMT2-229ENST00000557348 ADGRB1O14514 1584 aa17.2■□□□□ 0.34
SHMT2-229ENST00000557348 CFAP65Q6ZU64 1925 aaKnown RBP17.2■□□□□ 0.34
SHMT2-229ENST00000557348 MRS2Q9HD23 443 aa17.2■□□□□ 0.34
SHMT2-229ENST00000557348 TSHZ2Q9NRE2 1034 aa17.19■□□□□ 0.34
SHMT2-229ENST00000557348 BRD4O60885 1362 aaPredicted RBP17.17■□□□□ 0.34
SHMT2-229ENST00000557348 STAG3Q9UJ98 1225 aa17.17■□□□□ 0.34
SHMT2-229ENST00000557348 MYBBP1AQ9BQG0 1328 aaKnown RBP17.17■□□□□ 0.34
SHMT2-229ENST00000557348 CENPJQ9HC77 1338 aaPredicted RBP17.17■□□□□ 0.34
SHMT2-229ENST00000557348 KDM5AP29375 1690 aaKnown RBP17.17■□□□□ 0.34
SHMT2-229ENST00000557348 ZMYM3Q14202 1370 aa17.16■□□□□ 0.34
SHMT2-229ENST00000557348 PUS7Q96PZ0 661 aaKnown RBP17.15■□□□□ 0.34
SHMT2-229ENST00000557348 PARD3Q8TEW0 1356 aa17.14■□□□□ 0.34
SHMT2-229ENST00000557348 PER1O15534 1290 aaPredicted RBP17.14■□□□□ 0.33
SHMT2-229ENST00000557348 FBXO31Q5XUX0 539 aaPredicted RBP17.14■□□□□ 0.33
SHMT2-229ENST00000557348 HDGFP51858 240 aaKnown RBP17.13■□□□□ 0.33
SHMT2-229ENST00000557348 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.13■□□□□ 0.33
SHMT2-229ENST00000557348 A2ML1A8K2U0 1454 aa17.13■□□□□ 0.33
SHMT2-229ENST00000557348 MLECQ14165 292 aa17.13■□□□□ 0.33
SHMT2-229ENST00000557348 NPC1L1Q9UHC9 1359 aa17.12■□□□□ 0.33
SHMT2-229ENST00000557348 PANK3Q9H999 370 aa17.12■□□□□ 0.33
SHMT2-229ENST00000557348 KDM4FA0A1W2PPD8 638 aa17.1■□□□□ 0.33
SHMT2-229ENST00000557348 NLRP13Q86W25 1043 aa17.1■□□□□ 0.33
SHMT2-229ENST00000557348 KNSTRNQ9Y448 316 aa17.1■□□□□ 0.33
SHMT2-229ENST00000557348 TNRQ92752 1358 aa17.1■□□□□ 0.33
SHMT2-229ENST00000557348 TMC1Q8TDI8 760 aa17.1■□□□□ 0.33
SHMT2-229ENST00000557348 HNRNPUQ00839 825 aaKnown RBP eCLIP17.09■□□□□ 0.33
SHMT2-229ENST00000557348 RIMS2Q9UQ26 1411 aa17.09■□□□□ 0.33
SHMT2-229ENST00000557348 QRICH2Q9H0J4 1663 aa17.09■□□□□ 0.33
SHMT2-229ENST00000557348 NLRP1Q9C000 1473 aa17.08■□□□□ 0.32
SHMT2-229ENST00000557348 MYO5BQ9ULV0 1848 aa17.08■□□□□ 0.32
SHMT2-229ENST00000557348 TRAK1Q9UPV9 953 aa17.07■□□□□ 0.32
SHMT2-229ENST00000557348 MYOM1P52179 1685 aa17.07■□□□□ 0.32
SHMT2-229ENST00000557348 ASXL1Q8IXJ9 1541 aa17.07■□□□□ 0.32
SHMT2-229ENST00000557348 INSRP06213 1382 aa17.07■□□□□ 0.32
SHMT2-229ENST00000557348 EVC2Q86UK5 1308 aa17.06■□□□□ 0.32
SHMT2-229ENST00000557348 ARHGEF28Q8N1W1 1705 aaKnown RBP17.06■□□□□ 0.32
SHMT2-229ENST00000557348 NINLQ9Y2I6 1382 aa17.05■□□□□ 0.32
SHMT2-229ENST00000557348 ZBED9Q6R2W3 1325 aa17.05■□□□□ 0.32
SHMT2-229ENST00000557348 ALKQ9UM73 1620 aa17.05■□□□□ 0.32
SHMT2-229ENST00000557348 CCDC184Q52MB2 194 aa17.05■□□□□ 0.32
SHMT2-229ENST00000557348 FAM9BQ8IZU0 186 aa17.05■□□□□ 0.32
SHMT2-229ENST00000557348 YTHDC2Q9H6S0 1430 aaKnown RBP17.04■□□□□ 0.32
SHMT2-229ENST00000557348 DLC1Q96QB1 1528 aa17.04■□□□□ 0.32
SHMT2-229ENST00000557348 TMEM132EQ6IEE7 984 aa17.04■□□□□ 0.32
SHMT2-229ENST00000557348 PNISRQ8TF01 805 aaKnown RBP17.02■□□□□ 0.32
SHMT2-229ENST00000557348 LRPPRCP42704 1394 aaKnown RBP17.02■□□□□ 0.31
SHMT2-229ENST00000557348 NUTM2DQ5VT03 806 aaPredicted RBP17.01■□□□□ 0.31
SHMT2-229ENST00000557348 AMER1Q5JTC6 1135 aaPredicted RBP17■□□□□ 0.31
SHMT2-229ENST00000557348 PTPRMP28827 1452 aa17■□□□□ 0.31
SHMT2-229ENST00000557348 TMEM2Q9UHN6 1383 aa16.99■□□□□ 0.31
SHMT2-229ENST00000557348 ATAD2Q6PL18 1390 aa16.98■□□□□ 0.31
SHMT2-229ENST00000557348 NEFLP07196 543 aa16.98■□□□□ 0.31
SHMT2-229ENST00000557348 CC2D1BQ5T0F9 858 aaKnown RBP16.98■□□□□ 0.31
SHMT2-229ENST00000557348 BCL11AQ9H165 835 aa16.98■□□□□ 0.31
SHMT2-229ENST00000557348 ABCC11Q96J66 1382 aa16.98■□□□□ 0.31
SHMT2-229ENST00000557348 UBR1Q8IWV7 1749 aa16.97■□□□□ 0.31
SHMT2-229ENST00000557348 USP32Q8NFA0 1604 aa16.97■□□□□ 0.31
SHMT2-229ENST00000557348 TULP4Q9NRJ4 1543 aa16.97■□□□□ 0.31
SHMT2-229ENST00000557348 FER1L4A9Z1Z3 1794 aa16.97■□□□□ 0.31
SHMT2-229ENST00000557348 CNGB1Q14028 1251 aaPredicted RBP16.96■□□□□ 0.31
SHMT2-229ENST00000557348 POGKQ9P215 609 aa16.96■□□□□ 0.31
SHMT2-229ENST00000557348 SIRT1Q96EB6 747 aa16.95■□□□□ 0.3
SHMT2-229ENST00000557348 NSD2O96028 1365 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms