RNA–Protein interactions for RNA: ENST00000557341.5

SNX6-210, Transcript of sorting nexin 6, humanhuman

TSL 5

Gene SNX6, Length 559 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX6-210ENST00000557341 RRBP1Q9P2E9 1410 aaKnown RBP21.67■■□□□ 1.06
SNX6-210ENST00000557341 MED1Q15648 1581 aaPredicted RBP21.65■■□□□ 1.06
SNX6-210ENST00000557341 NKTRP30414 1462 aaKnown RBP21.64■■□□□ 1.06
SNX6-210ENST00000557341 NUP155O75694 1391 aa21.63■■□□□ 1.05
SNX6-210ENST00000557341 HSPA1LP34931 641 aa21.63■■□□□ 1.05
SNX6-210ENST00000557341 RIMS2Q9UQ26 1411 aa21.63■■□□□ 1.05
SNX6-210ENST00000557341 DIP2AQ14689 1571 aa21.61■■□□□ 1.05
SNX6-210ENST00000557341 PLEKHG1Q9ULL1 1385 aa21.61■■□□□ 1.05
SNX6-210ENST00000557341 SLC26A8Q96RN1 970 aa21.59■■□□□ 1.05
SNX6-210ENST00000557341 KIF1BO60333 1816 aa21.58■■□□□ 1.05
SNX6-210ENST00000557341 PPP1R15AO75807 674 aaPredicted RBP21.57■■□□□ 1.04
SNX6-210ENST00000557341 KCNA6P17658 529 aa21.57■■□□□ 1.04
SNX6-210ENST00000557341 ILDR2Q71H61 639 aa21.57■■□□□ 1.04
SNX6-210ENST00000557341 ROBO1Q9Y6N7 1651 aa21.56■■□□□ 1.04
SNX6-210ENST00000557341 HDGFP51858 240 aaKnown RBP21.56■■□□□ 1.04
SNX6-210ENST00000557341 BCANQ96GW7 911 aa21.56■■□□□ 1.04
SNX6-210ENST00000557341 TMEM94Q12767 1356 aa21.56■■□□□ 1.04
SNX6-210ENST00000557341 CHGAP10645 457 aaKnown RBP21.55■■□□□ 1.04
SNX6-210ENST00000557341 CLTCL1P53675 1640 aa21.55■■□□□ 1.04
SNX6-210ENST00000557341 TRPM2O94759 1503 aa21.54■■□□□ 1.04
SNX6-210ENST00000557341 NAIPQ13075 1403 aa21.54■■□□□ 1.04
SNX6-210ENST00000557341 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.53■■□□□ 1.04
SNX6-210ENST00000557341 NRXN3Q9Y4C0 1643 aa21.51■■□□□ 1.03
SNX6-210ENST00000557341 ADAMTS13Q76LX8 1427 aa21.5■■□□□ 1.03
SNX6-210ENST00000557341 PROSER2Q86WR7 435 aaPredicted RBP21.5■■□□□ 1.03
SNX6-210ENST00000557341 SENP3Q9H4L4 574 aaPredicted RBP21.5■■□□□ 1.03
SNX6-210ENST00000557341 SETBP1Q9Y6X0 1596 aa21.48■■□□□ 1.03
SNX6-210ENST00000557341 HFM1A2PYH4 1435 aa21.48■■□□□ 1.03
SNX6-210ENST00000557341 MSH6P52701 1360 aa21.48■■□□□ 1.03
SNX6-210ENST00000557341 FAM135BQ49AJ0 1406 aa21.46■■□□□ 1.03
SNX6-210ENST00000557341 XRN1Q8IZH2 1706 aaKnown RBP21.46■■□□□ 1.03
SNX6-210ENST00000557341 PIK3R4Q99570 1358 aa21.46■■□□□ 1.03
SNX6-210ENST00000557341 PHLPP1O60346 1717 aa21.46■■□□□ 1.03
SNX6-210ENST00000557341 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.46■■□□□ 1.03
SNX6-210ENST00000557341 NEXMIFQ5QGS0 1516 aa21.45■■□□□ 1.02
SNX6-210ENST00000557341 SOCS7O14512 581 aa21.45■■□□□ 1.02
SNX6-210ENST00000557341 TBX22Q9Y458 520 aa21.45■■□□□ 1.02
SNX6-210ENST00000557341 NUTM2DQ5VT03 806 aaPredicted RBP21.44■■□□□ 1.02
SNX6-210ENST00000557341 RBM33Q96EV2 1170 aaKnown RBP21.44■■□□□ 1.02
SNX6-210ENST00000557341 NCOA3Q9Y6Q9 1424 aa21.42■■□□□ 1.02
SNX6-210ENST00000557341 PPLO60437 1756 aa21.4■■□□□ 1.02
SNX6-210ENST00000557341 SETD1AO15047 1707 aaKnown RBP21.38■■□□□ 1.01
SNX6-210ENST00000557341 ZNF326Q5BKZ1 582 aaKnown RBP21.37■■□□□ 1.01
SNX6-210ENST00000557341 PHF23Q9BUL5 403 aaPredicted RBP21.37■■□□□ 1.01
SNX6-210ENST00000557341 PTPRUQ92729 1446 aa21.36■■□□□ 1.01
SNX6-210ENST00000557341 TRIM52Q96A61 297 aa21.35■■□□□ 1.01
SNX6-210ENST00000557341 COL16A1Q07092 1604 aaPredicted RBP21.35■■□□□ 1.01
SNX6-210ENST00000557341 NALCNQ8IZF0 1738 aa21.34■■□□□ 1.01
SNX6-210ENST00000557341 C14orf37Q86TY3 774 aa21.33■■□□□ 1.01
SNX6-210ENST00000557341 SLAIN2Q9P270 581 aa21.32■■□□□ 1
SNX6-210ENST00000557341 IFT172Q9UG01 1749 aa21.32■■□□□ 1
SNX6-210ENST00000557341 AHDC1Q5TGY3 1603 aaPredicted RBP21.31■■□□□ 1
SNX6-210ENST00000557341 DCCP43146 1447 aa21.3■■□□□ 1
SNX6-210ENST00000557341 SLC4A1APQ9BWU0 796 aaKnown RBP21.3■■□□□ 1
SNX6-210ENST00000557341 AMOTL2Q9Y2J4 779 aa21.3■■□□□ 1
SNX6-210ENST00000557341 SHPRHQ149N8 1683 aa21.29■■□□□ 1
SNX6-210ENST00000557341 CADPS2Q86UW7 1296 aa21.28■■□□□ 1
SNX6-210ENST00000557341 METP08581 1390 aa21.27■■□□□ 1
SNX6-210ENST00000557341 C19orf44Q9H6X5 657 aa21.27■■□□□ 1
SNX6-210ENST00000557341 NHSL1Q5SYE7 1610 aa21.26■□□□□ 0.99
SNX6-210ENST00000557341 ATF3P18847 181 aa21.26■□□□□ 0.99
SNX6-210ENST00000557341 JCADQ9P266 1359 aa21.23■□□□□ 0.99
SNX6-210ENST00000557341 ADGRL3Q9HAR2 1447 aa21.22■□□□□ 0.99
SNX6-210ENST00000557341 ASXL1Q8IXJ9 1541 aa21.22■□□□□ 0.99
SNX6-210ENST00000557341 CCDC144AA2RUR9 1427 aa21.21■□□□□ 0.99
SNX6-210ENST00000557341 PTCH1Q13635 1447 aa21.21■□□□□ 0.99
SNX6-210ENST00000557341 VGFO15240 615 aaPredicted RBP21.2■□□□□ 0.98
SNX6-210ENST00000557341 RPGRIP1LQ68CZ1 1315 aa21.2■□□□□ 0.98
SNX6-210ENST00000557341 MST1RQ04912 1400 aa21.2■□□□□ 0.98
SNX6-210ENST00000557341 PRAG1Q86YV5 1406 aa21.2■□□□□ 0.98
SNX6-210ENST00000557341 KNDC1Q76NI1 1749 aa21.18■□□□□ 0.98
SNX6-210ENST00000557341 FOXD1Q16676 465 aa21.16■□□□□ 0.98
SNX6-210ENST00000557341 RGS17Q9UGC6 210 aaPredicted RBP21.15■□□□□ 0.98
SNX6-210ENST00000557341 SPATA31E1Q6ZUB1 1445 aa21.14■□□□□ 0.98
SNX6-210ENST00000557341 BRINP3Q76B58 766 aa21.14■□□□□ 0.97
SNX6-210ENST00000557341 MPHOSPH9Q99550 1183 aa21.14■□□□□ 0.97
SNX6-210ENST00000557341 LRP6O75581 1613 aa21.14■□□□□ 0.97
SNX6-210ENST00000557341 LAMC1P11047 1609 aa21.14■□□□□ 0.97
SNX6-210ENST00000557341 ACIN1Q9UKV3 1341 aaKnown RBP21.13■□□□□ 0.97
SNX6-210ENST00000557341 SETD5Q9C0A6 1442 aa21.12■□□□□ 0.97
SNX6-210ENST00000557341 SPATA31A6Q5VVP1 1343 aa21.12■□□□□ 0.97
SNX6-210ENST00000557341 CDC42BPGQ6DT37 1551 aa21.11■□□□□ 0.97
SNX6-210ENST00000557341 ROBO2Q9HCK4 1378 aa21.1■□□□□ 0.97
SNX6-210ENST00000557341 ANKRD30BQ9BXX2 1392 aa21.09■□□□□ 0.97
SNX6-210ENST00000557341 C1orf167Q5SNV9 1468 aa21.07■□□□□ 0.96
SNX6-210ENST00000557341 PIK3C2GO75747 1445 aa21.06■□□□□ 0.96
SNX6-210ENST00000557341 ADGRF5Q8IZF2 1346 aa21.05■□□□□ 0.96
SNX6-210ENST00000557341 RGL3Q3MIN7 710 aa21.05■□□□□ 0.96
SNX6-210ENST00000557341 RAB3GAP2Q9H2M9 1393 aa21.05■□□□□ 0.96
SNX6-210ENST00000557341 POTEAQ6S8J7 498 aa21.04■□□□□ 0.96
SNX6-210ENST00000557341 TECPR2O15040 1411 aa21.04■□□□□ 0.96
SNX6-210ENST00000557341 MYOM2P54296 1465 aa21.03■□□□□ 0.96
SNX6-210ENST00000557341 MEX3CQ5U5Q3 659 aaKnown RBP21.03■□□□□ 0.96
SNX6-210ENST00000557341 FMN2Q9NZ56 1722 aa21.02■□□□□ 0.96
SNX6-210ENST00000557341 NRXN1Q9ULB1 1477 aa21■□□□□ 0.95
SNX6-210ENST00000557341 COL22A1Q8NFW1 1626 aaPredicted RBP20.99■□□□□ 0.95
SNX6-210ENST00000557341 LRPPRCP42704 1394 aaKnown RBP20.98■□□□□ 0.95
SNX6-210ENST00000557341 LRRC59Q96AG4 307 aaKnown RBP20.98■□□□□ 0.95
SNX6-210ENST00000557341 KIF1AQ12756 1690 aa20.98■□□□□ 0.95
SNX6-210ENST00000557341 MARF1Q9Y4F3 1742 aaKnown RBP20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms