RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 ANKRD30BQ9BXX2 1392 aa25.71■■□□□ 1.71
SHMT2-225ENST00000556798 ZNF326Q5BKZ1 582 aaKnown RBP25.7■■□□□ 1.7
SHMT2-225ENST00000556798 DMRT2Q9Y5R5 561 aa25.7■■□□□ 1.7
SHMT2-225ENST00000556798 EID1Q9Y6B2 187 aa25.7■■□□□ 1.7
SHMT2-225ENST00000556798 NEXMIFQ5QGS0 1516 aa25.69■■□□□ 1.7
SHMT2-225ENST00000556798 PPLO60437 1756 aa25.69■■□□□ 1.7
SHMT2-225ENST00000556798 NUTM2DQ5VT03 806 aaPredicted RBP25.68■■□□□ 1.7
SHMT2-225ENST00000556798 IFT172Q9UG01 1749 aa25.66■■□□□ 1.7
SHMT2-225ENST00000556798 SENP3Q9H4L4 574 aaPredicted RBP25.66■■□□□ 1.7
SHMT2-225ENST00000556798 DHX57Q6P158 1386 aaKnown RBP25.66■■□□□ 1.7
SHMT2-225ENST00000556798 SPATA31E1Q6ZUB1 1445 aa25.65■■□□□ 1.7
SHMT2-225ENST00000556798 PPP1R15AO75807 674 aaPredicted RBP25.64■■□□□ 1.7
SHMT2-225ENST00000556798 RGL3Q3MIN7 710 aa25.6■■□□□ 1.69
SHMT2-225ENST00000556798 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.6■■□□□ 1.69
SHMT2-225ENST00000556798 PLEKHG1Q9ULL1 1385 aa25.59■■□□□ 1.69
SHMT2-225ENST00000556798 HDGFP51858 240 aaKnown RBP25.59■■□□□ 1.69
SHMT2-225ENST00000556798 NRXN3Q9Y4C0 1643 aa25.59■■□□□ 1.69
SHMT2-225ENST00000556798 BCANQ96GW7 911 aa25.57■■□□□ 1.68
SHMT2-225ENST00000556798 STRCP1A6NGW2 1772 aa25.56■■□□□ 1.68
SHMT2-225ENST00000556798 ZNF335Q9H4Z2 1342 aaPredicted RBP25.55■■□□□ 1.68
SHMT2-225ENST00000556798 SETBP1Q9Y6X0 1596 aa25.54■■□□□ 1.68
SHMT2-225ENST00000556798 SLC26A8Q96RN1 970 aa25.54■■□□□ 1.68
SHMT2-225ENST00000556798 RPGRIP1LQ68CZ1 1315 aa25.53■■□□□ 1.68
SHMT2-225ENST00000556798 LTBP4Q8N2S1 1624 aa25.52■■□□□ 1.68
SHMT2-225ENST00000556798 ADAMTS13Q76LX8 1427 aa25.52■■□□□ 1.68
SHMT2-225ENST00000556798 DIP2AQ14689 1571 aa25.51■■□□□ 1.67
SHMT2-225ENST00000556798 SETD1AO15047 1707 aaKnown RBP25.49■■□□□ 1.67
SHMT2-225ENST00000556798 SIN3AQ96ST3 1273 aa25.48■■□□□ 1.67
SHMT2-225ENST00000556798 CHD2O14647 1828 aaKnown RBP25.48■■□□□ 1.67
SHMT2-225ENST00000556798 VGFO15240 615 aaPredicted RBP25.47■■□□□ 1.67
SHMT2-225ENST00000556798 ADGRF5Q8IZF2 1346 aa25.45■■□□□ 1.66
SHMT2-225ENST00000556798 MYOM2P54296 1465 aa25.45■■□□□ 1.66
SHMT2-225ENST00000556798 NWD1Q149M9 1564 aa25.44■■□□□ 1.66
SHMT2-225ENST00000556798 NEUROD1Q13562 356 aa25.43■■□□□ 1.66
SHMT2-225ENST00000556798 ALKQ9UM73 1620 aa25.43■■□□□ 1.66
SHMT2-225ENST00000556798 CPS1P31327 1500 aa25.42■■□□□ 1.66
SHMT2-225ENST00000556798 TBX22Q9Y458 520 aa25.41■■□□□ 1.66
SHMT2-225ENST00000556798 PIK3C2GO75747 1445 aa25.4■■□□□ 1.66
SHMT2-225ENST00000556798 NRXN1Q9ULB1 1477 aa25.4■■□□□ 1.66
SHMT2-225ENST00000556798 DCAF11Q8TEB1 546 aa25.39■■□□□ 1.66
SHMT2-225ENST00000556798 XIRP1Q702N8 1843 aaKnown RBP25.38■■□□□ 1.65
SHMT2-225ENST00000556798 KDM2AQ9Y2K7 1162 aa25.38■■□□□ 1.65
SHMT2-225ENST00000556798 METP08581 1390 aa25.37■■□□□ 1.65
SHMT2-225ENST00000556798 XRN1Q8IZH2 1706 aaKnown RBP25.37■■□□□ 1.65
SHMT2-225ENST00000556798 LAMC1P11047 1609 aa25.36■■□□□ 1.65
SHMT2-225ENST00000556798 PTPRUQ92729 1446 aa25.36■■□□□ 1.65
SHMT2-225ENST00000556798 KCNA6P17658 529 aa25.35■■□□□ 1.65
SHMT2-225ENST00000556798 CERKQ8TCT0 537 aa25.35■■□□□ 1.65
SHMT2-225ENST00000556798 PIK3R4Q99570 1358 aa25.34■■□□□ 1.65
SHMT2-225ENST00000556798 ASXL1Q8IXJ9 1541 aa25.34■■□□□ 1.65
SHMT2-225ENST00000556798 LRRC7Q96NW7 1537 aa25.34■■□□□ 1.65
SHMT2-225ENST00000556798 NKTRP30414 1462 aaKnown RBP25.34■■□□□ 1.65
SHMT2-225ENST00000556798 L3MBTL2Q969R5 705 aa25.3■■□□□ 1.64
SHMT2-225ENST00000556798 AMOTL2Q9Y2J4 779 aa25.28■■□□□ 1.64
SHMT2-225ENST00000556798 CFAP70Q5T0N1 1121 aa25.27■■□□□ 1.64
SHMT2-225ENST00000556798 CCER1Q8TC90 406 aaPredicted RBP25.27■■□□□ 1.64
SHMT2-225ENST00000556798 IQSEC2Q5JU85 1478 aa25.27■■□□□ 1.64
SHMT2-225ENST00000556798 RBM33Q96EV2 1170 aaKnown RBP25.26■■□□□ 1.63
SHMT2-225ENST00000556798 C14orf93Q9H972 538 aaKnown RBP25.26■■□□□ 1.63
SHMT2-225ENST00000556798 KNDC1Q76NI1 1749 aa25.26■■□□□ 1.63
SHMT2-225ENST00000556798 STAC3Q96MF2 364 aa25.25■■□□□ 1.63
SHMT2-225ENST00000556798 TONSLQ96HA7 1378 aa25.25■■□□□ 1.63
SHMT2-225ENST00000556798 PRAG1Q86YV5 1406 aa25.25■■□□□ 1.63
SHMT2-225ENST00000556798 KIAA1210Q9ULL0 1709 aa25.24■■□□□ 1.63
SHMT2-225ENST00000556798 TMEM94Q12767 1356 aa25.24■■□□□ 1.63
SHMT2-225ENST00000556798 TMEM132EQ6IEE7 984 aa25.24■■□□□ 1.63
SHMT2-225ENST00000556798 PROSER2Q86WR7 435 aaPredicted RBP25.24■■□□□ 1.63
SHMT2-225ENST00000556798 ADGRB1O14514 1584 aa25.22■■□□□ 1.63
SHMT2-225ENST00000556798 CLSPNQ9HAW4 1339 aa25.21■■□□□ 1.63
SHMT2-225ENST00000556798 TRPM1Q7Z4N2 1603 aa25.19■■□□□ 1.62
SHMT2-225ENST00000556798 PTCH1Q13635 1447 aa25.19■■□□□ 1.62
SHMT2-225ENST00000556798 YTHDC2Q9H6S0 1430 aaKnown RBP25.19■■□□□ 1.62
SHMT2-225ENST00000556798 NALCNQ8IZF0 1738 aa25.18■■□□□ 1.62
SHMT2-225ENST00000556798 STK26Q9P289 416 aa25.18■■□□□ 1.62
SHMT2-225ENST00000556798 LRPPRCP42704 1394 aaKnown RBP25.18■■□□□ 1.62
SHMT2-225ENST00000556798 ROBO2Q9HCK4 1378 aa25.18■■□□□ 1.62
SHMT2-225ENST00000556798 TECPR2O15040 1411 aa25.15■■□□□ 1.62
SHMT2-225ENST00000556798 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.15■■□□□ 1.62
SHMT2-225ENST00000556798 ARHGEF28Q8N1W1 1705 aaKnown RBP25.12■■□□□ 1.61
SHMT2-225ENST00000556798 C14orf37Q86TY3 774 aa25.12■■□□□ 1.61
SHMT2-225ENST00000556798 ABCC11Q96J66 1382 aa25.12■■□□□ 1.61
SHMT2-225ENST00000556798 MSH6P52701 1360 aa25.1■■□□□ 1.61
SHMT2-225ENST00000556798 UBAP1LF5GYI3 381 aa25.1■■□□□ 1.61
SHMT2-225ENST00000556798 NBPF1Q3BBV0 1214 aa25.1■■□□□ 1.61
SHMT2-225ENST00000556798 NBPF8Q3BBV2 869 aa25.1■■□□□ 1.61
SHMT2-225ENST00000556798 NCOA3Q9Y6Q9 1424 aa25.1■■□□□ 1.61
SHMT2-225ENST00000556798 PLEKHH1Q9ULM0 1364 aa25.08■■□□□ 1.61
SHMT2-225ENST00000556798 DLC1Q96QB1 1528 aa25.08■■□□□ 1.61
SHMT2-225ENST00000556798 ADGRL3Q9HAR2 1447 aa25.07■■□□□ 1.6
SHMT2-225ENST00000556798 WAPLQ7Z5K2 1190 aa25.07■■□□□ 1.6
SHMT2-225ENST00000556798 FBXO41Q8TF61 875 aa25.06■■□□□ 1.6
SHMT2-225ENST00000556798 TRAK1Q9UPV9 953 aa25.06■■□□□ 1.6
SHMT2-225ENST00000556798 FAM135BQ49AJ0 1406 aa25.03■■□□□ 1.6
SHMT2-225ENST00000556798 TOM1O60784 492 aa25.03■■□□□ 1.6
SHMT2-225ENST00000556798 ROCK2O75116 1388 aaKnown RBP25.03■■□□□ 1.6
SHMT2-225ENST00000556798 RALGAPBQ86X10 1494 aa25.02■■□□□ 1.6
SHMT2-225ENST00000556798 C19orf44Q9H6X5 657 aa25.02■■□□□ 1.6
SHMT2-225ENST00000556798 PRAM1Q96QH2 718 aa25.01■■□□□ 1.59
SHMT2-225ENST00000556798 PIP4K2BP78356 416 aa25■■□□□ 1.59
SHMT2-225ENST00000556798 SAFB2Q14151 953 aaKnown RBP eCLIP25■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms