RNA–Protein interactions for RNA: ENST00000556778.5

PRKCH-222, Transcript of protein kinase C eta, human

TSL 4

Gene PRKCH, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-222	ENST00000556778	LTK	P29376	864 aa		13.09	□□□□□ -0.31
PRKCH-222	ENST00000556778	SLC52A1	Q9NWF4	448 aa		13.09	□□□□□ -0.31
PRKCH-222	ENST00000556778	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	13.09	□□□□□ -0.31
PRKCH-222	ENST00000556778	IQGAP3	Q86VI3	1631 aa		13.09	□□□□□ -0.31
PRKCH-222	ENST00000556778	MYO3A	Q8NEV4	1616 aa		13.09	□□□□□ -0.31
PRKCH-222	ENST00000556778	PLA2R1	Q13018	1463 aa		13.09	□□□□□ -0.31
PRKCH-222	ENST00000556778	NLRP1	Q9C000	1473 aa		13.09	□□□□□ -0.31
PRKCH-222	ENST00000556778	PREX1	Q8TCU6	1659 aa		13.08	□□□□□ -0.31
PRKCH-222	ENST00000556778	SYNM	O15061	1565 aa		13.08	□□□□□ -0.32
PRKCH-222	ENST00000556778	NUTM2D	Q5VT03	806 aa	Predicted RBP	13.08	□□□□□ -0.32
PRKCH-222	ENST00000556778	RPRD2	Q5VT52	1461 aa	Known RBP	13.07	□□□□□ -0.32
PRKCH-222	ENST00000556778	PTPRT	O14522	1441 aa		13.06	□□□□□ -0.32
PRKCH-222	ENST00000556778	TET3	O43151	1660 aa		13.06	□□□□□ -0.32
PRKCH-222	ENST00000556778	TXNDC2	Q86VQ3	553 aa		13.06	□□□□□ -0.32
PRKCH-222	ENST00000556778	ANKLE2	Q86XL3	938 aa		13.06	□□□□□ -0.32
PRKCH-222	ENST00000556778		E9PCH4	1651 aa		13.05	□□□□□ -0.32
PRKCH-222	ENST00000556778	SPDYE4	A6NLX3	237 aa		13.05	□□□□□ -0.32
PRKCH-222	ENST00000556778	HRC	P23327	699 aa		13.05	□□□□□ -0.32
PRKCH-222	ENST00000556778	PCGF6	Q9BYE7	350 aa		13.03	□□□□□ -0.32
PRKCH-222	ENST00000556778	TMEM2	Q9UHN6	1383 aa		13.03	□□□□□ -0.32
PRKCH-222	ENST00000556778	PIK3C2B	O00750	1634 aa		13.01	□□□□□ -0.33
PRKCH-222	ENST00000556778	PITPNM1	O00562	1244 aa		13	□□□□□ -0.33
PRKCH-222	ENST00000556778	ZNF326	Q5BKZ1	582 aa	Known RBP	13	□□□□□ -0.33
PRKCH-222	ENST00000556778	EID1	Q9Y6B2	187 aa		13	□□□□□ -0.33
PRKCH-222	ENST00000556778	SETD1B	Q9UPS6	1966 aa	Known RBP	13	□□□□□ -0.33
PRKCH-222	ENST00000556778	CFAP65	Q6ZU64	1925 aa	Known RBP	13	□□□□□ -0.33
PRKCH-222	ENST00000556778	STRC	Q7RTU9	1775 aa		12.99	□□□□□ -0.33
PRKCH-222	ENST00000556778	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	12.99	□□□□□ -0.33
PRKCH-222	ENST00000556778	RGL3	Q3MIN7	710 aa		12.99	□□□□□ -0.33
PRKCH-222	ENST00000556778	SLC26A8	Q96RN1	970 aa		12.99	□□□□□ -0.33
PRKCH-222	ENST00000556778	ZNF142	P52746	1687 aa	Predicted RBP	12.99	□□□□□ -0.33
PRKCH-222	ENST00000556778	ARHGAP23	Q9P227	1491 aa		12.98	□□□□□ -0.33
PRKCH-222	ENST00000556778	CHRDL2	Q6WN34	429 aa		12.98	□□□□□ -0.33
PRKCH-222	ENST00000556778	BCAN	Q96GW7	911 aa		12.98	□□□□□ -0.33
PRKCH-222	ENST00000556778	NPHP4	O75161	1426 aa	Predicted RBP	12.97	□□□□□ -0.33
PRKCH-222	ENST00000556778	RIMS2	Q9UQ26	1411 aa		12.97	□□□□□ -0.33
PRKCH-222	ENST00000556778	ADGRB3	O60242	1522 aa		12.97	□□□□□ -0.33
PRKCH-222	ENST00000556778	ZFYVE9	O95405	1425 aa		12.96	□□□□□ -0.33
PRKCH-222	ENST00000556778	UBR1	Q8IWV7	1749 aa		12.96	□□□□□ -0.33
PRKCH-222	ENST00000556778	ANKRD30B	Q9BXX2	1392 aa		12.96	□□□□□ -0.33
PRKCH-222	ENST00000556778	ACIN1	Q9UKV3	1341 aa	Known RBP	12.96	□□□□□ -0.33
PRKCH-222	ENST00000556778	NEURL4	Q96JN8	1562 aa		12.96	□□□□□ -0.33
PRKCH-222	ENST00000556778	PPP1R15A	O75807	674 aa	Predicted RBP	12.96	□□□□□ -0.33
PRKCH-222	ENST00000556778	SLIT1	O75093	1534 aa		12.96	□□□□□ -0.33
PRKCH-222	ENST00000556778	TRPM2	O94759	1503 aa		12.96	□□□□□ -0.33
PRKCH-222	ENST00000556778	SCAF11	Q99590	1463 aa	Known RBP	12.96	□□□□□ -0.34
PRKCH-222	ENST00000556778	CLTCL1	P53675	1640 aa		12.95	□□□□□ -0.34
PRKCH-222	ENST00000556778	TMEM131L	A2VDJ0	1609 aa		12.95	□□□□□ -0.34
PRKCH-222	ENST00000556778	MED14	O60244	1454 aa		12.94	□□□□□ -0.34
PRKCH-222	ENST00000556778	CCDC144A	A2RUR9	1427 aa		12.94	□□□□□ -0.34
PRKCH-222	ENST00000556778	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	12.93	□□□□□ -0.34
PRKCH-222	ENST00000556778	SIN3A	Q96ST3	1273 aa		12.93	□□□□□ -0.34
PRKCH-222	ENST00000556778	HDGF	P51858	240 aa	Known RBP	12.92	□□□□□ -0.34
PRKCH-222	ENST00000556778	RBM33	Q96EV2	1170 aa	Known RBP	12.92	□□□□□ -0.34
PRKCH-222	ENST00000556778	SPATA31E1	Q6ZUB1	1445 aa		12.91	□□□□□ -0.34
PRKCH-222	ENST00000556778	SPDYE1	Q8NFV5	336 aa	Predicted RBP	12.91	□□□□□ -0.34
PRKCH-222	ENST00000556778	CERK	Q8TCT0	537 aa		12.91	□□□□□ -0.34
PRKCH-222	ENST00000556778	DHX57	Q6P158	1386 aa	Known RBP	12.91	□□□□□ -0.34
PRKCH-222	ENST00000556778	SPHKAP	Q2M3C7	1700 aa		12.91	□□□□□ -0.34
PRKCH-222	ENST00000556778	ADGRF5	Q8IZF2	1346 aa		12.9	□□□□□ -0.34
PRKCH-222	ENST00000556778	PLEKHG1	Q9ULL1	1385 aa		12.9	□□□□□ -0.34
PRKCH-222	ENST00000556778	NEUROD1	Q13562	356 aa		12.89	□□□□□ -0.35
PRKCH-222	ENST00000556778	KDM2A	Q9Y2K7	1162 aa		12.88	□□□□□ -0.35
PRKCH-222	ENST00000556778	LTBP4	Q8N2S1	1624 aa		12.88	□□□□□ -0.35
PRKCH-222	ENST00000556778	ADAMTS13	Q76LX8	1427 aa		12.88	□□□□□ -0.35
PRKCH-222	ENST00000556778	RPGRIP1L	Q68CZ1	1315 aa		12.88	□□□□□ -0.35
PRKCH-222	ENST00000556778	VGF	O15240	615 aa	Predicted RBP	12.87	□□□□□ -0.35
PRKCH-222	ENST00000556778	FKBP8	Q14318	412 aa		12.87	□□□□□ -0.35
PRKCH-222	ENST00000556778	PROM2	Q8N271	834 aa		12.87	□□□□□ -0.35
PRKCH-222	ENST00000556778	TBX22	Q9Y458	520 aa		12.87	□□□□□ -0.35
PRKCH-222	ENST00000556778	MET	P08581	1390 aa		12.86	□□□□□ -0.35
PRKCH-222	ENST00000556778	DCAF11	Q8TEB1	546 aa		12.86	□□□□□ -0.35
PRKCH-222	ENST00000556778	NEXMIF	Q5QGS0	1516 aa		12.86	□□□□□ -0.35
PRKCH-222	ENST00000556778	KCNA6	P17658	529 aa		12.85	□□□□□ -0.35
PRKCH-222	ENST00000556778	CLEC11A	Q9Y240	323 aa		12.85	□□□□□ -0.35
PRKCH-222	ENST00000556778	KDM5A	P29375	1690 aa	Known RBP	12.85	□□□□□ -0.35
PRKCH-222	ENST00000556778	IQGAP1	P46940	1657 aa		12.83	□□□□□ -0.35
PRKCH-222	ENST00000556778	PTPRU	Q92729	1446 aa		12.83	□□□□□ -0.36
PRKCH-222	ENST00000556778	TMEM132E	Q6IEE7	984 aa		12.83	□□□□□ -0.36
PRKCH-222	ENST00000556778	AMOTL2	Q9Y2J4	779 aa		12.83	□□□□□ -0.36
PRKCH-222	ENST00000556778	MYO5B	Q9ULV0	1848 aa		12.83	□□□□□ -0.36
PRKCH-222	ENST00000556778	CFAP70	Q5T0N1	1121 aa		12.82	□□□□□ -0.36
PRKCH-222	ENST00000556778	POTEH	Q6S545	545 aa		12.82	□□□□□ -0.36
PRKCH-222	ENST00000556778	POLR1A	O95602	1720 aa	Predicted RBP	12.82	□□□□□ -0.36
PRKCH-222	ENST00000556778	ILDR1	Q86SU0	546 aa	Predicted RBP	12.81	□□□□□ -0.36
PRKCH-222	ENST00000556778	PROSER2	Q86WR7	435 aa	Predicted RBP	12.81	□□□□□ -0.36
PRKCH-222	ENST00000556778	L3MBTL2	Q969R5	705 aa		12.81	□□□□□ -0.36
PRKCH-222	ENST00000556778	LRRC7	Q96NW7	1537 aa		12.79	□□□□□ -0.36
PRKCH-222	ENST00000556778	PIP4P2	Q8N4L2	257 aa		12.79	□□□□□ -0.36
PRKCH-222	ENST00000556778	C14orf93	Q9H972	538 aa	Known RBP	12.79	□□□□□ -0.36
PRKCH-222	ENST00000556778	STK26	Q9P289	416 aa		12.79	□□□□□ -0.36
PRKCH-222	ENST00000556778	TMEM94	Q12767	1356 aa		12.79	□□□□□ -0.36
PRKCH-222	ENST00000556778	FXR2	P51116	673 aa	Known RBP eCLIP	12.78	□□□□□ -0.36
PRKCH-222	ENST00000556778	NRXN3	Q9Y4C0	1643 aa		12.77	□□□□□ -0.36
PRKCH-222	ENST00000556778	SETBP1	Q9Y6X0	1596 aa		12.77	□□□□□ -0.37
PRKCH-222	ENST00000556778	UBAP1L	F5GYI3	381 aa		12.76	□□□□□ -0.37
PRKCH-222	ENST00000556778	FBXO41	Q8TF61	875 aa		12.76	□□□□□ -0.37
PRKCH-222	ENST00000556778	PIK3C2G	O75747	1445 aa		12.76	□□□□□ -0.37
PRKCH-222	ENST00000556778	STRCP1	A6NGW2	1772 aa		12.76	□□□□□ -0.37
PRKCH-222	ENST00000556778	KIF1B	O60333	1816 aa		12.75	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms