RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 RIMS2Q9UQ26 1411 aa17.88■□□□□ 0.45
VRK1-204ENST00000555351 NWD1Q149M9 1564 aa17.84■□□□□ 0.45
VRK1-204ENST00000555351 NKTRP30414 1462 aaKnown RBP17.84■□□□□ 0.45
VRK1-204ENST00000555351 KCNA6P17658 529 aa17.84■□□□□ 0.45
VRK1-204ENST00000555351 TRPM2O94759 1503 aa17.83■□□□□ 0.45
VRK1-204ENST00000555351 ACIN1Q9UKV3 1341 aaKnown RBP17.83■□□□□ 0.44
VRK1-204ENST00000555351 ALKQ9UM73 1620 aa17.83■□□□□ 0.44
VRK1-204ENST00000555351 DIP2AQ14689 1571 aa17.83■□□□□ 0.44
VRK1-204ENST00000555351 PPP1R15AO75807 674 aaPredicted RBP17.82■□□□□ 0.44
VRK1-204ENST00000555351 TBX22Q9Y458 520 aa17.82■□□□□ 0.44
VRK1-204ENST00000555351 SLC26A8Q96RN1 970 aa17.81■□□□□ 0.44
VRK1-204ENST00000555351 XIRP1Q702N8 1843 aaKnown RBP17.81■□□□□ 0.44
VRK1-204ENST00000555351 PIK3R4Q99570 1358 aa17.8■□□□□ 0.44
VRK1-204ENST00000555351 CHGAP10645 457 aaKnown RBP17.8■□□□□ 0.44
VRK1-204ENST00000555351 CHD2O14647 1828 aaKnown RBP17.79■□□□□ 0.44
VRK1-204ENST00000555351 CLTCL1P53675 1640 aa17.77■□□□□ 0.44
VRK1-204ENST00000555351 BCANQ96GW7 911 aa17.77■□□□□ 0.44
VRK1-204ENST00000555351 ADAMTS13Q76LX8 1427 aa17.76■□□□□ 0.43
VRK1-204ENST00000555351 NCOA3Q9Y6Q9 1424 aa17.76■□□□□ 0.43
VRK1-204ENST00000555351 PIP4K2BP78356 416 aa17.76■□□□□ 0.43
VRK1-204ENST00000555351 TRIM52Q96A61 297 aa17.76■□□□□ 0.43
VRK1-204ENST00000555351 TMEM94Q12767 1356 aa17.76■□□□□ 0.43
VRK1-204ENST00000555351 KIF1BO60333 1816 aa17.75■□□□□ 0.43
VRK1-204ENST00000555351 PROSER2Q86WR7 435 aaPredicted RBP17.75■□□□□ 0.43
VRK1-204ENST00000555351 SLC4A1APQ9BWU0 796 aaKnown RBP17.75■□□□□ 0.43
VRK1-204ENST00000555351 SETBP1Q9Y6X0 1596 aa17.74■□□□□ 0.43
VRK1-204ENST00000555351 SCAF1Q9H7N4 1312 aaKnown RBP17.74■□□□□ 0.43
VRK1-204ENST00000555351 HSPA1LP34931 641 aa17.72■□□□□ 0.43
VRK1-204ENST00000555351 NEXMIFQ5QGS0 1516 aa17.72■□□□□ 0.43
VRK1-204ENST00000555351 FAM135BQ49AJ0 1406 aa17.71■□□□□ 0.43
VRK1-204ENST00000555351 NRXN3Q9Y4C0 1643 aa17.7■□□□□ 0.42
VRK1-204ENST00000555351 ZNF326Q5BKZ1 582 aaKnown RBP17.7■□□□□ 0.42
VRK1-204ENST00000555351 MSH6P52701 1360 aa17.69■□□□□ 0.42
VRK1-204ENST00000555351 RPGRIP1LQ68CZ1 1315 aa17.69■□□□□ 0.42
VRK1-204ENST00000555351 DISP3Q9P2K9 1392 aa17.68■□□□□ 0.42
VRK1-204ENST00000555351 SETD5Q9C0A6 1442 aa17.67■□□□□ 0.42
VRK1-204ENST00000555351 NUTM2DQ5VT03 806 aaPredicted RBP17.67■□□□□ 0.42
VRK1-204ENST00000555351 VGFO15240 615 aaPredicted RBP17.66■□□□□ 0.42
VRK1-204ENST00000555351 XRN1Q8IZH2 1706 aaKnown RBP17.65■□□□□ 0.42
VRK1-204ENST00000555351 MPHOSPH9Q99550 1183 aa17.65■□□□□ 0.42
VRK1-204ENST00000555351 AMOTL2Q9Y2J4 779 aa17.63■□□□□ 0.41
VRK1-204ENST00000555351 CCDC144AA2RUR9 1427 aa17.63■□□□□ 0.41
VRK1-204ENST00000555351 PTPRUQ92729 1446 aa17.63■□□□□ 0.41
VRK1-204ENST00000555351 PPLO60437 1756 aa17.62■□□□□ 0.41
VRK1-204ENST00000555351 ROBO1Q9Y6N7 1651 aa17.61■□□□□ 0.41
VRK1-204ENST00000555351 SENP3Q9H4L4 574 aaPredicted RBP17.61■□□□□ 0.41
VRK1-204ENST00000555351 C19orf44Q9H6X5 657 aa17.61■□□□□ 0.41
VRK1-204ENST00000555351 DCCP43146 1447 aa17.61■□□□□ 0.41
VRK1-204ENST00000555351 CADPS2Q86UW7 1296 aa17.6■□□□□ 0.41
VRK1-204ENST00000555351 RBM33Q96EV2 1170 aaKnown RBP17.6■□□□□ 0.41
VRK1-204ENST00000555351 SLAIN2Q9P270 581 aa17.6■□□□□ 0.41
VRK1-204ENST00000555351 PRAG1Q86YV5 1406 aa17.6■□□□□ 0.41
VRK1-204ENST00000555351 MED1Q15648 1581 aaPredicted RBP17.6■□□□□ 0.41
VRK1-204ENST00000555351 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.59■□□□□ 0.41
VRK1-204ENST00000555351 SPATA31E1Q6ZUB1 1445 aa17.59■□□□□ 0.41
VRK1-204ENST00000555351 METP08581 1390 aa17.59■□□□□ 0.41
VRK1-204ENST00000555351 HRCP23327 699 aa17.59■□□□□ 0.41
VRK1-204ENST00000555351 SETD1AO15047 1707 aaKnown RBP17.58■□□□□ 0.41
VRK1-204ENST00000555351 ANKRD30BQ9BXX2 1392 aa17.57■□□□□ 0.4
VRK1-204ENST00000555351 RAB3GAP2Q9H2M9 1393 aa17.57■□□□□ 0.4
VRK1-204ENST00000555351 FOXD1Q16676 465 aa17.56■□□□□ 0.4
VRK1-204ENST00000555351 C14orf37Q86TY3 774 aa17.56■□□□□ 0.4
VRK1-204ENST00000555351 PTCH1Q13635 1447 aa17.55■□□□□ 0.4
VRK1-204ENST00000555351 IFT172Q9UG01 1749 aa17.55■□□□□ 0.4
VRK1-204ENST00000555351 ATF3P18847 181 aa17.55■□□□□ 0.4
VRK1-204ENST00000555351 ADGRL3Q9HAR2 1447 aa17.52■□□□□ 0.4
VRK1-204ENST00000555351 PHLPP1O60346 1717 aa17.5■□□□□ 0.39
VRK1-204ENST00000555351 ILDR2Q71H61 639 aa17.5■□□□□ 0.39
VRK1-204ENST00000555351 PHF23Q9BUL5 403 aaPredicted RBP17.5■□□□□ 0.39
VRK1-204ENST00000555351 AHDC1Q5TGY3 1603 aaPredicted RBP17.5■□□□□ 0.39
VRK1-204ENST00000555351 NALCNQ8IZF0 1738 aa17.48■□□□□ 0.39
VRK1-204ENST00000555351 ADGRF5Q8IZF2 1346 aa17.47■□□□□ 0.39
VRK1-204ENST00000555351 PIK3C2GO75747 1445 aa17.47■□□□□ 0.39
VRK1-204ENST00000555351 COL16A1Q07092 1604 aaPredicted RBP17.47■□□□□ 0.39
VRK1-204ENST00000555351 RGL3Q3MIN7 710 aa17.47■□□□□ 0.39
VRK1-204ENST00000555351 MYOM2P54296 1465 aa17.47■□□□□ 0.39
VRK1-204ENST00000555351 MST1RQ04912 1400 aa17.47■□□□□ 0.39
VRK1-204ENST00000555351 JCADQ9P266 1359 aa17.46■□□□□ 0.39
VRK1-204ENST00000555351 TECPR2O15040 1411 aa17.46■□□□□ 0.39
VRK1-204ENST00000555351 NRXN1Q9ULB1 1477 aa17.45■□□□□ 0.38
VRK1-204ENST00000555351 ROBO2Q9HCK4 1378 aa17.45■□□□□ 0.38
VRK1-204ENST00000555351 SOCS7O14512 581 aa17.45■□□□□ 0.38
VRK1-204ENST00000555351 LAMC1P11047 1609 aa17.45■□□□□ 0.38
VRK1-204ENST00000555351 BRINP3Q76B58 766 aa17.44■□□□□ 0.38
VRK1-204ENST00000555351 KNDC1Q76NI1 1749 aa17.44■□□□□ 0.38
VRK1-204ENST00000555351 ASXL1Q8IXJ9 1541 aa17.43■□□□□ 0.38
VRK1-204ENST00000555351 STAC3Q96MF2 364 aa17.43■□□□□ 0.38
VRK1-204ENST00000555351 LRPPRCP42704 1394 aaKnown RBP17.42■□□□□ 0.38
VRK1-204ENST00000555351 ABCC11Q96J66 1382 aa17.42■□□□□ 0.38
VRK1-204ENST00000555351 NHSL1Q5SYE7 1610 aa17.42■□□□□ 0.38
VRK1-204ENST00000555351 SHPRHQ149N8 1683 aa17.41■□□□□ 0.38
VRK1-204ENST00000555351 CDC42BPGQ6DT37 1551 aa17.4■□□□□ 0.38
VRK1-204ENST00000555351 SIRT1Q96EB6 747 aa17.4■□□□□ 0.38
VRK1-204ENST00000555351 C14orf93Q9H972 538 aaKnown RBP17.4■□□□□ 0.38
VRK1-204ENST00000555351 SPATA31A6Q5VVP1 1343 aa17.4■□□□□ 0.38
VRK1-204ENST00000555351 C1orf167Q5SNV9 1468 aa17.39■□□□□ 0.37
VRK1-204ENST00000555351 YTHDC2Q9H6S0 1430 aaKnown RBP17.38■□□□□ 0.37
VRK1-204ENST00000555351 DHX57Q6P158 1386 aaKnown RBP17.35■□□□□ 0.37
VRK1-204ENST00000555351 LRRC59Q96AG4 307 aaKnown RBP17.34■□□□□ 0.37
VRK1-204ENST00000555351 TMEM132EQ6IEE7 984 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms