RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 LTBP4Q8N2S1 1624 aa21.03■□□□□ 0.96
SHMT2-217ENST00000555116 ZNF335Q9H4Z2 1342 aaPredicted RBP21■□□□□ 0.95
SHMT2-217ENST00000555116 CCDC144AA2RUR9 1427 aa20.99■□□□□ 0.95
SHMT2-217ENST00000555116 HDGFP51858 240 aaKnown RBP20.98■□□□□ 0.95
SHMT2-217ENST00000555116 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.98■□□□□ 0.95
SHMT2-217ENST00000555116 NEXMIFQ5QGS0 1516 aa20.97■□□□□ 0.95
SHMT2-217ENST00000555116 PLEKHG1Q9ULL1 1385 aa20.97■□□□□ 0.95
SHMT2-217ENST00000555116 STRCP1A6NGW2 1772 aa20.96■□□□□ 0.95
SHMT2-217ENST00000555116 ZNF326Q5BKZ1 582 aaKnown RBP20.96■□□□□ 0.95
SHMT2-217ENST00000555116 NUTM2DQ5VT03 806 aaPredicted RBP20.96■□□□□ 0.95
SHMT2-217ENST00000555116 ANKRD30BQ9BXX2 1392 aa20.95■□□□□ 0.94
SHMT2-217ENST00000555116 PPP1R15AO75807 674 aaPredicted RBP20.94■□□□□ 0.94
SHMT2-217ENST00000555116 PPLO60437 1756 aa20.94■□□□□ 0.94
SHMT2-217ENST00000555116 CERKQ8TCT0 537 aa20.94■□□□□ 0.94
SHMT2-217ENST00000555116 SPATA31E1Q6ZUB1 1445 aa20.94■□□□□ 0.94
SHMT2-217ENST00000555116 SLC26A8Q96RN1 970 aa20.91■□□□□ 0.94
SHMT2-217ENST00000555116 NRXN3Q9Y4C0 1643 aa20.9■□□□□ 0.94
SHMT2-217ENST00000555116 IFT172Q9UG01 1749 aa20.9■□□□□ 0.94
SHMT2-217ENST00000555116 SENP3Q9H4L4 574 aaPredicted RBP20.9■□□□□ 0.94
SHMT2-217ENST00000555116 ADAMTS13Q76LX8 1427 aa20.9■□□□□ 0.94
SHMT2-217ENST00000555116 CPS1P31327 1500 aa20.9■□□□□ 0.94
SHMT2-217ENST00000555116 RPGRIP1LQ68CZ1 1315 aa20.89■□□□□ 0.94
SHMT2-217ENST00000555116 BCANQ96GW7 911 aa20.89■□□□□ 0.93
SHMT2-217ENST00000555116 SETBP1Q9Y6X0 1596 aa20.89■□□□□ 0.93
SHMT2-217ENST00000555116 DIP2AQ14689 1571 aa20.88■□□□□ 0.93
SHMT2-217ENST00000555116 CHD2O14647 1828 aaKnown RBP20.87■□□□□ 0.93
SHMT2-217ENST00000555116 TBX22Q9Y458 520 aa20.86■□□□□ 0.93
SHMT2-217ENST00000555116 RGL3Q3MIN7 710 aa20.86■□□□□ 0.93
SHMT2-217ENST00000555116 IQSEC2Q5JU85 1478 aa20.86■□□□□ 0.93
SHMT2-217ENST00000555116 NWD1Q149M9 1564 aa20.85■□□□□ 0.93
SHMT2-217ENST00000555116 VGFO15240 615 aaPredicted RBP20.84■□□□□ 0.93
SHMT2-217ENST00000555116 KCNA6P17658 529 aa20.82■□□□□ 0.92
SHMT2-217ENST00000555116 LRRC7Q96NW7 1537 aa20.81■□□□□ 0.92
SHMT2-217ENST00000555116 SETD1AO15047 1707 aaKnown RBP20.81■□□□□ 0.92
SHMT2-217ENST00000555116 XIRP1Q702N8 1843 aaKnown RBP20.81■□□□□ 0.92
SHMT2-217ENST00000555116 DHX57Q6P158 1386 aaKnown RBP20.8■□□□□ 0.92
SHMT2-217ENST00000555116 PIK3R4Q99570 1358 aa20.8■□□□□ 0.92
SHMT2-217ENST00000555116 ADGRF5Q8IZF2 1346 aa20.78■□□□□ 0.92
SHMT2-217ENST00000555116 ALKQ9UM73 1620 aa20.78■□□□□ 0.92
SHMT2-217ENST00000555116 FBXO41Q8TF61 875 aa20.77■□□□□ 0.92
SHMT2-217ENST00000555116 NKTRP30414 1462 aaKnown RBP20.77■□□□□ 0.92
SHMT2-217ENST00000555116 PTPRUQ92729 1446 aa20.77■□□□□ 0.91
SHMT2-217ENST00000555116 METP08581 1390 aa20.76■□□□□ 0.91
SHMT2-217ENST00000555116 XRN1Q8IZH2 1706 aaKnown RBP20.75■□□□□ 0.91
SHMT2-217ENST00000555116 MYOM2P54296 1465 aa20.75■□□□□ 0.91
SHMT2-217ENST00000555116 PCGF6Q9BYE7 350 aa20.74■□□□□ 0.91
SHMT2-217ENST00000555116 NRXN1Q9ULB1 1477 aa20.74■□□□□ 0.91
SHMT2-217ENST00000555116 ILDR1Q86SU0 546 aaPredicted RBP20.73■□□□□ 0.91
SHMT2-217ENST00000555116 PIK3C2GO75747 1445 aa20.73■□□□□ 0.91
SHMT2-217ENST00000555116 PROSER2Q86WR7 435 aaPredicted RBP20.71■□□□□ 0.91
SHMT2-217ENST00000555116 AMOTL2Q9Y2J4 779 aa20.71■□□□□ 0.91
SHMT2-217ENST00000555116 TMEM94Q12767 1356 aa20.71■□□□□ 0.91
SHMT2-217ENST00000555116 SIN3AQ96ST3 1273 aa20.68■□□□□ 0.9
SHMT2-217ENST00000555116 DCAF11Q8TEB1 546 aa20.67■□□□□ 0.9
SHMT2-217ENST00000555116 RBM33Q96EV2 1170 aaKnown RBP20.67■□□□□ 0.9
SHMT2-217ENST00000555116 ASXL1Q8IXJ9 1541 aa20.67■□□□□ 0.9
SHMT2-217ENST00000555116 LAMC1P11047 1609 aa20.67■□□□□ 0.9
SHMT2-217ENST00000555116 UBAP1LF5GYI3 381 aa20.67■□□□□ 0.9
SHMT2-217ENST00000555116 STAC3Q96MF2 364 aa20.65■□□□□ 0.9
SHMT2-217ENST00000555116 KDM2AQ9Y2K7 1162 aa20.65■□□□□ 0.9
SHMT2-217ENST00000555116 C14orf93Q9H972 538 aaKnown RBP20.64■□□□□ 0.9
SHMT2-217ENST00000555116 PRAG1Q86YV5 1406 aa20.64■□□□□ 0.9
SHMT2-217ENST00000555116 NCOA3Q9Y6Q9 1424 aa20.64■□□□□ 0.89
SHMT2-217ENST00000555116 CFAP70Q5T0N1 1121 aa20.62■□□□□ 0.89
SHMT2-217ENST00000555116 TOM1O60784 492 aa20.61■□□□□ 0.89
SHMT2-217ENST00000555116 PTCH1Q13635 1447 aa20.61■□□□□ 0.89
SHMT2-217ENST00000555116 KNDC1Q76NI1 1749 aa20.61■□□□□ 0.89
SHMT2-217ENST00000555116 NEUROD1Q13562 356 aa20.6■□□□□ 0.89
SHMT2-217ENST00000555116 TMEM132EQ6IEE7 984 aa20.6■□□□□ 0.89
SHMT2-217ENST00000555116 LRPPRCP42704 1394 aaKnown RBP20.59■□□□□ 0.89
SHMT2-217ENST00000555116 ROBO2Q9HCK4 1378 aa20.59■□□□□ 0.89
SHMT2-217ENST00000555116 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.59■□□□□ 0.89
SHMT2-217ENST00000555116 MSH6P52701 1360 aa20.58■□□□□ 0.89
SHMT2-217ENST00000555116 TECPR2O15040 1411 aa20.58■□□□□ 0.88
SHMT2-217ENST00000555116 L3MBTL2Q969R5 705 aa20.58■□□□□ 0.88
SHMT2-217ENST00000555116 ADGRB1O14514 1584 aa20.57■□□□□ 0.88
SHMT2-217ENST00000555116 YTHDC2Q9H6S0 1430 aaKnown RBP20.57■□□□□ 0.88
SHMT2-217ENST00000555116 NALCNQ8IZF0 1738 aa20.57■□□□□ 0.88
SHMT2-217ENST00000555116 ABCC11Q96J66 1382 aa20.56■□□□□ 0.88
SHMT2-217ENST00000555116 KIAA1210Q9ULL0 1709 aa20.56■□□□□ 0.88
SHMT2-217ENST00000555116 STK26Q9P289 416 aa20.56■□□□□ 0.88
SHMT2-217ENST00000555116 C14orf37Q86TY3 774 aa20.54■□□□□ 0.88
SHMT2-217ENST00000555116 C19orf44Q9H6X5 657 aa20.54■□□□□ 0.88
SHMT2-217ENST00000555116 PIP4K2BP78356 416 aa20.54■□□□□ 0.88
SHMT2-217ENST00000555116 ADGRL3Q9HAR2 1447 aa20.53■□□□□ 0.88
SHMT2-217ENST00000555116 DCCP43146 1447 aa20.51■□□□□ 0.87
SHMT2-217ENST00000555116 SCAF1Q9H7N4 1312 aaKnown RBP20.51■□□□□ 0.87
SHMT2-217ENST00000555116 DLC1Q96QB1 1528 aa20.5■□□□□ 0.87
SHMT2-217ENST00000555116 SIRT1Q96EB6 747 aa20.5■□□□□ 0.87
SHMT2-217ENST00000555116 FAM135BQ49AJ0 1406 aa20.49■□□□□ 0.87
SHMT2-217ENST00000555116 PLEKHH1Q9ULM0 1364 aa20.49■□□□□ 0.87
SHMT2-217ENST00000555116 WAPLQ7Z5K2 1190 aa20.48■□□□□ 0.87
SHMT2-217ENST00000555116 CADPS2Q86UW7 1296 aa20.48■□□□□ 0.87
SHMT2-217ENST00000555116 ROBO1Q9Y6N7 1651 aa20.48■□□□□ 0.87
SHMT2-217ENST00000555116 ATF3P18847 181 aa20.47■□□□□ 0.87
SHMT2-217ENST00000555116 SLAIN2Q9P270 581 aa20.47■□□□□ 0.87
SHMT2-217ENST00000555116 TRPM1Q7Z4N2 1603 aa20.47■□□□□ 0.87
SHMT2-217ENST00000555116 TONSLQ96HA7 1378 aa20.46■□□□□ 0.87
SHMT2-217ENST00000555116 ARHGEF28Q8N1W1 1705 aaKnown RBP20.45■□□□□ 0.86
SHMT2-217ENST00000555116 CLSPNQ9HAW4 1339 aa20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 132 ms