RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 SENP3Q9H4L4 574 aaPredicted RBP16.33■□□□□ 0.2
SHMT2-215ENST00000554656 SLC52A1Q9NWF4 448 aa16.33■□□□□ 0.2
SHMT2-215ENST00000554656 CHD2O14647 1828 aaKnown RBP16.33■□□□□ 0.2
SHMT2-215ENST00000554656 TMEM94Q12767 1356 aa16.32■□□□□ 0.2
SHMT2-215ENST00000554656 NKTRP30414 1462 aaKnown RBP16.31■□□□□ 0.2
SHMT2-215ENST00000554656 RIMS2Q9UQ26 1411 aa16.3■□□□□ 0.2
SHMT2-215ENST00000554656 KCNA6P17658 529 aa16.3■□□□□ 0.2
SHMT2-215ENST00000554656 ROBO1Q9Y6N7 1651 aa16.3■□□□□ 0.2
SHMT2-215ENST00000554656 PLEKHG1Q9ULL1 1385 aa16.29■□□□□ 0.2
SHMT2-215ENST00000554656 RBM33Q96EV2 1170 aaKnown RBP16.28■□□□□ 0.2
SHMT2-215ENST00000554656 PPARGC1BQ86YN6 1023 aaKnown RBP16.27■□□□□ 0.2
SHMT2-215ENST00000554656 FAM135BQ49AJ0 1406 aa16.27■□□□□ 0.19
SHMT2-215ENST00000554656 SPHKAPQ2M3C7 1700 aa16.25■□□□□ 0.19
SHMT2-215ENST00000554656 PROSER2Q86WR7 435 aaPredicted RBP16.25■□□□□ 0.19
SHMT2-215ENST00000554656 ADAMTS13Q76LX8 1427 aa16.25■□□□□ 0.19
SHMT2-215ENST00000554656 DIP2AQ14689 1571 aa16.23■□□□□ 0.19
SHMT2-215ENST00000554656 ITGAEP38570 1179 aa16.23■□□□□ 0.19
SHMT2-215ENST00000554656 NUP155O75694 1391 aa16.23■□□□□ 0.19
SHMT2-215ENST00000554656 NRXN3Q9Y4C0 1643 aa16.22■□□□□ 0.19
SHMT2-215ENST00000554656 PPP1R15AO75807 674 aaPredicted RBP16.2■□□□□ 0.18
SHMT2-215ENST00000554656 CHGAP10645 457 aaKnown RBP16.2■□□□□ 0.18
SHMT2-215ENST00000554656 NUTM2DQ5VT03 806 aaPredicted RBP16.2■□□□□ 0.18
SHMT2-215ENST00000554656 BCANQ96GW7 911 aa16.2■□□□□ 0.18
SHMT2-215ENST00000554656 PHLPP1O60346 1717 aa16.19■□□□□ 0.18
SHMT2-215ENST00000554656 MSH6P52701 1360 aa16.19■□□□□ 0.18
SHMT2-215ENST00000554656 PHF23Q9BUL5 403 aaPredicted RBP16.19■□□□□ 0.18
SHMT2-215ENST00000554656 TBX22Q9Y458 520 aa16.19■□□□□ 0.18
SHMT2-215ENST00000554656 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.19■□□□□ 0.18
SHMT2-215ENST00000554656 CLTCL1P53675 1640 aa16.19■□□□□ 0.18
SHMT2-215ENST00000554656 RRBP1Q9P2E9 1410 aaKnown RBP16.19■□□□□ 0.18
SHMT2-215ENST00000554656 RGS17Q9UGC6 210 aaPredicted RBP16.18■□□□□ 0.18
SHMT2-215ENST00000554656 PTPRUQ92729 1446 aa16.18■□□□□ 0.18
SHMT2-215ENST00000554656 XRN1Q8IZH2 1706 aaKnown RBP16.17■□□□□ 0.18
SHMT2-215ENST00000554656 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.17■□□□□ 0.18
SHMT2-215ENST00000554656 TRPM2O94759 1503 aa16.17■□□□□ 0.18
SHMT2-215ENST00000554656 SETBP1Q9Y6X0 1596 aa16.17■□□□□ 0.18
SHMT2-215ENST00000554656 COL16A1Q07092 1604 aaPredicted RBP16.16■□□□□ 0.18
SHMT2-215ENST00000554656 HDGFP51858 240 aaKnown RBP16.15■□□□□ 0.18
SHMT2-215ENST00000554656 PIK3R4Q99570 1358 aa16.14■□□□□ 0.17
SHMT2-215ENST00000554656 NAIPQ13075 1403 aa16.14■□□□□ 0.17
SHMT2-215ENST00000554656 NCOA3Q9Y6Q9 1424 aa16.14■□□□□ 0.17
SHMT2-215ENST00000554656 SLAIN2Q9P270 581 aa16.13■□□□□ 0.17
SHMT2-215ENST00000554656 NEXMIFQ5QGS0 1516 aa16.13■□□□□ 0.17
SHMT2-215ENST00000554656 KIF1BO60333 1816 aa16.11■□□□□ 0.17
SHMT2-215ENST00000554656 AHDC1Q5TGY3 1603 aaPredicted RBP16.11■□□□□ 0.17
SHMT2-215ENST00000554656 SETD1AO15047 1707 aaKnown RBP16.09■□□□□ 0.17
SHMT2-215ENST00000554656 AMOTL2Q9Y2J4 779 aa16.08■□□□□ 0.16
SHMT2-215ENST00000554656 NALCNQ8IZF0 1738 aa16.08■□□□□ 0.16
SHMT2-215ENST00000554656 POTEAQ6S8J7 498 aa16.07■□□□□ 0.16
SHMT2-215ENST00000554656 METP08581 1390 aa16.07■□□□□ 0.16
SHMT2-215ENST00000554656 JCADQ9P266 1359 aa16.07■□□□□ 0.16
SHMT2-215ENST00000554656 LRP6O75581 1613 aa16.07■□□□□ 0.16
SHMT2-215ENST00000554656 SHPRHQ149N8 1683 aa16.07■□□□□ 0.16
SHMT2-215ENST00000554656 HFM1A2PYH4 1435 aa16.06■□□□□ 0.16
SHMT2-215ENST00000554656 C14orf37Q86TY3 774 aa16.05■□□□□ 0.16
SHMT2-215ENST00000554656 C19orf44Q9H6X5 657 aa16.05■□□□□ 0.16
SHMT2-215ENST00000554656 DCCP43146 1447 aa16.04■□□□□ 0.16
SHMT2-215ENST00000554656 CADPS2Q86UW7 1296 aa16.04■□□□□ 0.16
SHMT2-215ENST00000554656 NHSL1Q5SYE7 1610 aa16.04■□□□□ 0.16
SHMT2-215ENST00000554656 PPLO60437 1756 aa16.03■□□□□ 0.16
SHMT2-215ENST00000554656 ZNF326Q5BKZ1 582 aaKnown RBP16.03■□□□□ 0.16
SHMT2-215ENST00000554656 ASXL1Q8IXJ9 1541 aa16.03■□□□□ 0.16
SHMT2-215ENST00000554656 MST1RQ04912 1400 aa16.02■□□□□ 0.16
SHMT2-215ENST00000554656 ATF3P18847 181 aa16.02■□□□□ 0.16
SHMT2-215ENST00000554656 BRINP3Q76B58 766 aa16.01■□□□□ 0.15
SHMT2-215ENST00000554656 ADGRL3Q9HAR2 1447 aa16.01■□□□□ 0.15
SHMT2-215ENST00000554656 SPATA31A6Q5VVP1 1343 aa15.96■□□□□ 0.15
SHMT2-215ENST00000554656 PTCH1Q13635 1447 aa15.96■□□□□ 0.15
SHMT2-215ENST00000554656 PRAG1Q86YV5 1406 aa15.96■□□□□ 0.15
SHMT2-215ENST00000554656 TRIM52Q96A61 297 aa15.96■□□□□ 0.15
SHMT2-215ENST00000554656 IFT172Q9UG01 1749 aa15.96■□□□□ 0.15
SHMT2-215ENST00000554656 LAMC1P11047 1609 aa15.95■□□□□ 0.14
SHMT2-215ENST00000554656 SETD5Q9C0A6 1442 aa15.94■□□□□ 0.14
SHMT2-215ENST00000554656 SLC4A1APQ9BWU0 796 aaKnown RBP15.94■□□□□ 0.14
SHMT2-215ENST00000554656 ROBO2Q9HCK4 1378 aa15.94■□□□□ 0.14
SHMT2-215ENST00000554656 FOXD1Q16676 465 aa15.93■□□□□ 0.14
SHMT2-215ENST00000554656 DDX17Q92841 729 aaKnown RBP15.92■□□□□ 0.14
SHMT2-215ENST00000554656 C1orf167Q5SNV9 1468 aa15.91■□□□□ 0.14
SHMT2-215ENST00000554656 VGFO15240 615 aaPredicted RBP15.9■□□□□ 0.14
SHMT2-215ENST00000554656 SPATA31E1Q6ZUB1 1445 aa15.9■□□□□ 0.14
SHMT2-215ENST00000554656 RPGRIP1LQ68CZ1 1315 aa15.9■□□□□ 0.14
SHMT2-215ENST00000554656 PNPLA6Q8IY17 1366 aa15.88■□□□□ 0.13
SHMT2-215ENST00000554656 MEX3CQ5U5Q3 659 aaKnown RBP15.88■□□□□ 0.13
SHMT2-215ENST00000554656 NUTM2BA6NNL0 878 aaPredicted RBP15.87■□□□□ 0.13
SHMT2-215ENST00000554656 NUTM2EB1AL46 878 aaPredicted RBP15.87■□□□□ 0.13
SHMT2-215ENST00000554656 NUTM2AQ8IVF1 878 aaPredicted RBP15.87■□□□□ 0.13
SHMT2-215ENST00000554656 ADGRF5Q8IZF2 1346 aa15.87■□□□□ 0.13
SHMT2-215ENST00000554656 CDC42BPGQ6DT37 1551 aa15.87■□□□□ 0.13
SHMT2-215ENST00000554656 KNDC1Q76NI1 1749 aa15.86■□□□□ 0.13
SHMT2-215ENST00000554656 CCDC144AA2RUR9 1427 aa15.85■□□□□ 0.13
SHMT2-215ENST00000554656 ZNF772Q68DY9 489 aaPredicted RBP15.84■□□□□ 0.13
SHMT2-215ENST00000554656 ORAI2Q96SN7 254 aa15.84■□□□□ 0.13
SHMT2-215ENST00000554656 AFF2P51816 1311 aa15.84■□□□□ 0.13
SHMT2-215ENST00000554656 LRRC59Q96AG4 307 aaKnown RBP15.83■□□□□ 0.12
SHMT2-215ENST00000554656 MPHOSPH9Q99550 1183 aa15.83■□□□□ 0.12
SHMT2-215ENST00000554656 TECPR2O15040 1411 aa15.83■□□□□ 0.12
SHMT2-215ENST00000554656 COL22A1Q8NFW1 1626 aaPredicted RBP15.83■□□□□ 0.12
SHMT2-215ENST00000554656 PIK3C2GO75747 1445 aa15.82■□□□□ 0.12
SHMT2-215ENST00000554656 SOS2Q07890 1332 aaPredicted RBP15.81■□□□□ 0.12
SHMT2-215ENST00000554656 RGL3Q3MIN7 710 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 162.7 ms