RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 IQGAP1P46940 1657 aa16.33■□□□□ 0.2
SHMT2-207ENST00000553837 TMF1P82094 1093 aa16.32■□□□□ 0.2
SHMT2-207ENST00000553837 CC2D1BQ5T0F9 858 aaKnown RBP16.32■□□□□ 0.2
SHMT2-207ENST00000553837 UGGT1Q9NYU2 1555 aa16.32■□□□□ 0.2
SHMT2-207ENST00000553837 NLRP13Q86W25 1043 aa16.31■□□□□ 0.2
SHMT2-207ENST00000553837 RNF123Q5XPI4 1314 aa16.31■□□□□ 0.2
SHMT2-207ENST00000553837 KIDINS220Q9ULH0 1771 aa16.31■□□□□ 0.2
SHMT2-207ENST00000553837 CCDC136Q96JN2 1154 aa16.3■□□□□ 0.2
SHMT2-207ENST00000553837 KANK1Q14678 1352 aa16.3■□□□□ 0.2
SHMT2-207ENST00000553837 WASHC2CQ9Y4E1 1318 aa16.26■□□□□ 0.19
SHMT2-207ENST00000553837 IL27Q8NEV9 243 aa16.26■□□□□ 0.19
SHMT2-207ENST00000553837 DAXXQ9UER7 740 aaPredicted RBP16.26■□□□□ 0.19
SHMT2-207ENST00000553837 SCAF11Q99590 1463 aaKnown RBP16.26■□□□□ 0.19
SHMT2-207ENST00000553837 PKNOX2Q96KN3 472 aa16.26■□□□□ 0.19
SHMT2-207ENST00000553837 USP35Q9P2H5 1018 aa16.26■□□□□ 0.19
SHMT2-207ENST00000553837 PPRC1Q5VV67 1664 aaKnown RBP16.25■□□□□ 0.19
SHMT2-207ENST00000553837 CYB5RLQ6IPT4 315 aa16.25■□□□□ 0.19
SHMT2-207ENST00000553837 EFCAB6Q5THR3 1501 aa16.25■□□□□ 0.19
SHMT2-207ENST00000553837 ADGRF5Q8IZF2 1346 aa16.23■□□□□ 0.19
SHMT2-207ENST00000553837 ZNF518AQ6AHZ1 1483 aa16.23■□□□□ 0.19
SHMT2-207ENST00000553837 CFAP70Q5T0N1 1121 aa16.23■□□□□ 0.19
SHMT2-207ENST00000553837 NEURL4Q96JN8 1562 aa16.22■□□□□ 0.19
SHMT2-207ENST00000553837 MROH2AA6NES4 1674 aa16.22■□□□□ 0.19
SHMT2-207ENST00000553837 STAC3Q96MF2 364 aa16.22■□□□□ 0.19
SHMT2-207ENST00000553837 ABCA6Q8N139 1617 aa16.22■□□□□ 0.19
SHMT2-207ENST00000553837 FRMPD1Q5SYB0 1578 aa16.22■□□□□ 0.19
SHMT2-207ENST00000553837 MAP3K4Q9Y6R4 1608 aa16.21■□□□□ 0.19
SHMT2-207ENST00000553837 CD109Q6YHK3 1445 aa16.21■□□□□ 0.19
SHMT2-207ENST00000553837 MYOM1P52179 1685 aa16.21■□□□□ 0.18
SHMT2-207ENST00000553837 KIAA1210Q9ULL0 1709 aa16.2■□□□□ 0.18
SHMT2-207ENST00000553837 NPM1P06748 294 aaKnown RBP eCLIP16.2■□□□□ 0.18
SHMT2-207ENST00000553837 POGZQ7Z3K3 1410 aa16.2■□□□□ 0.18
SHMT2-207ENST00000553837 LMTK2Q8IWU2 1503 aa16.2■□□□□ 0.18
SHMT2-207ENST00000553837 AMER1Q5JTC6 1135 aaPredicted RBP16.2■□□□□ 0.18
SHMT2-207ENST00000553837 IFT172Q9UG01 1749 aa16.2■□□□□ 0.18
SHMT2-207ENST00000553837 MYOM2P54296 1465 aa16.19■□□□□ 0.18
SHMT2-207ENST00000553837 BLMP54132 1417 aaPredicted RBP16.19■□□□□ 0.18
SHMT2-207ENST00000553837 CDCA7LQ96GN5 454 aa16.19■□□□□ 0.18
SHMT2-207ENST00000553837 KIF1BO60333 1816 aa16.19■□□□□ 0.18
SHMT2-207ENST00000553837 SYNMO15061 1565 aa16.19■□□□□ 0.18
SHMT2-207ENST00000553837 RTN4Q9NQC3 1192 aaKnown RBP16.17■□□□□ 0.18
SHMT2-207ENST00000553837 PPP2R1AP30153 589 aa16.16■□□□□ 0.18
SHMT2-207ENST00000553837 KNSTRNQ9Y448 316 aa16.16■□□□□ 0.18
SHMT2-207ENST00000553837 NPATQ14207 1427 aa16.16■□□□□ 0.18
SHMT2-207ENST00000553837 MLH3Q9UHC1 1453 aa16.16■□□□□ 0.18
SHMT2-207ENST00000553837 NEFMP07197 916 aa16.16■□□□□ 0.18
SHMT2-207ENST00000553837 NRXN1Q9ULB1 1477 aa16.15■□□□□ 0.18
SHMT2-207ENST00000553837 CFAP65Q6ZU64 1925 aaKnown RBP16.15■□□□□ 0.18
SHMT2-207ENST00000553837 ERVK-7P63135 1459 aa16.15■□□□□ 0.18
SHMT2-207ENST00000553837 ADGRB3O60242 1522 aa16.15■□□□□ 0.18
SHMT2-207ENST00000553837 PPM1GO15355 546 aaPredicted RBP16.14■□□□□ 0.17
SHMT2-207ENST00000553837 GGT6Q6P531 493 aa16.14■□□□□ 0.17
SHMT2-207ENST00000553837 ADAMTS8Q9UP79 889 aa16.14■□□□□ 0.17
SHMT2-207ENST00000553837 HECW2Q9P2P5 1572 aa16.14■□□□□ 0.17
SHMT2-207ENST00000553837 NOS1P29475 1434 aa16.14■□□□□ 0.17
SHMT2-207ENST00000553837 INSRP06213 1382 aa16.14■□□□□ 0.17
SHMT2-207ENST00000553837 EIF3AQ14152 1382 aaKnown RBP16.14■□□□□ 0.17
SHMT2-207ENST00000553837 RRP1P56182 461 aaKnown RBP16.14■□□□□ 0.17
SHMT2-207ENST00000553837 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.14■□□□□ 0.17
SHMT2-207ENST00000553837 CFAP74Q9C0B2 1584 aa16.13■□□□□ 0.17
SHMT2-207ENST00000553837 ZMYM4Q5VZL5 1548 aa16.13■□□□□ 0.17
SHMT2-207ENST00000553837 CDCA8Q53HL2 280 aa16.13■□□□□ 0.17
SHMT2-207ENST00000553837 RCAN3Q9UKA8 241 aa16.13■□□□□ 0.17
SHMT2-207ENST00000553837 ASXL1Q8IXJ9 1541 aa16.13■□□□□ 0.17
SHMT2-207ENST00000553837 RAPGEF3O95398 923 aa16.13■□□□□ 0.17
SHMT2-207ENST00000553837 KDM5AP29375 1690 aaKnown RBP16.13■□□□□ 0.17
SHMT2-207ENST00000553837 TCERG1O14776 1098 aaKnown RBP16.12■□□□□ 0.17
SHMT2-207ENST00000553837 PDE3BQ13370 1112 aa16.12■□□□□ 0.17
SHMT2-207ENST00000553837 CHGAP10645 457 aaKnown RBP16.11■□□□□ 0.17
SHMT2-207ENST00000553837 ABCC3O15438 1527 aa16.1■□□□□ 0.17
SHMT2-207ENST00000553837 CARD14Q9BXL6 1004 aa16.1■□□□□ 0.17
SHMT2-207ENST00000553837 EXOC6Q8TAG9 804 aa16.09■□□□□ 0.17
SHMT2-207ENST00000553837 SIGLEC1Q9BZZ2 1709 aa16.09■□□□□ 0.17
SHMT2-207ENST00000553837 NPM2Q86SE8 214 aaKnown RBP16.09■□□□□ 0.17
SHMT2-207ENST00000553837 PPLO60437 1756 aa16.09■□□□□ 0.17
SHMT2-207ENST00000553837 MYO3AQ8NEV4 1616 aa16.08■□□□□ 0.16
SHMT2-207ENST00000553837 LAS1LQ9Y4W2 734 aaKnown RBP16.07■□□□□ 0.16
SHMT2-207ENST00000553837 NPC1L1Q9UHC9 1359 aa16.07■□□□□ 0.16
SHMT2-207ENST00000553837 PIK3C2GO75747 1445 aa16.07■□□□□ 0.16
SHMT2-207ENST00000553837 PLEKHH1Q9ULM0 1364 aa16.07■□□□□ 0.16
SHMT2-207ENST00000553837 NEO1Q92859 1461 aa16.06■□□□□ 0.16
SHMT2-207ENST00000553837 MS4A1P11836 297 aa16.06■□□□□ 0.16
SHMT2-207ENST00000553837 PDE4AP27815 886 aa16.06■□□□□ 0.16
SHMT2-207ENST00000553837 ADGRB1O14514 1584 aa16.05■□□□□ 0.16
SHMT2-207ENST00000553837 DIP2CQ9Y2E4 1556 aa16.05■□□□□ 0.16
SHMT2-207ENST00000553837 SETBP1Q9Y6X0 1596 aa16.05■□□□□ 0.16
SHMT2-207ENST00000553837 CAMSAP1Q5T5Y3 1602 aa16.05■□□□□ 0.16
SHMT2-207ENST00000553837 TMEM132EQ6IEE7 984 aa16.05■□□□□ 0.16
SHMT2-207ENST00000553837 C14orf93Q9H972 538 aaKnown RBP16.05■□□□□ 0.16
SHMT2-207ENST00000553837 TRAK1Q9UPV9 953 aa16.05■□□□□ 0.16
SHMT2-207ENST00000553837 PLIN1O60240 522 aa16.04■□□□□ 0.16
SHMT2-207ENST00000553837 SBNO2Q9Y2G9 1366 aa16.04■□□□□ 0.16
SHMT2-207ENST00000553837 WDR43Q15061 677 aaKnown RBP eCLIP16.03■□□□□ 0.16
SHMT2-207ENST00000553837 GLIPR1L2Q4G1C9 344 aa16.03■□□□□ 0.16
SHMT2-207ENST00000553837 BACH2Q9BYV9 841 aa16.03■□□□□ 0.16
SHMT2-207ENST00000553837 CENPJQ9HC77 1338 aaPredicted RBP16.03■□□□□ 0.16
SHMT2-207ENST00000553837 NUTM2DQ5VT03 806 aaPredicted RBP16.03■□□□□ 0.16
SHMT2-207ENST00000553837 ZNF521Q96K83 1311 aa16.03■□□□□ 0.16
SHMT2-207ENST00000553837 GSE1Q14687 1217 aa16.02■□□□□ 0.16
SHMT2-207ENST00000553837 ZC3H13Q5T200 1668 aaKnown RBP16.02■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms