RNA–Protein interactions for RNA: ENST00000553039.1

CKAP4-203, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 4

Gene CKAP4, Length 573 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-203ENST00000553039 ROBO1Q9Y6N7 1651 aa8.35□□□□□ -1.07
CKAP4-203ENST00000553039 DCAF8L1A6NGE4 600 aa8.35□□□□□ -1.07
CKAP4-203ENST00000553039 YY1P25490 414 aa8.35□□□□□ -1.07
CKAP4-203ENST00000553039 HAP1P54257 671 aaPredicted RBP8.35□□□□□ -1.07
CKAP4-203ENST00000553039 PREX2Q70Z35 1606 aa8.35□□□□□ -1.07
CKAP4-203ENST00000553039 NCOA3Q9Y6Q9 1424 aa8.35□□□□□ -1.07
CKAP4-203ENST00000553039 STRCP1A6NGW2 1772 aa8.35□□□□□ -1.07
CKAP4-203ENST00000553039 USP21Q9UK80 565 aa8.34□□□□□ -1.07
CKAP4-203ENST00000553039 LRP6O75581 1613 aa8.33□□□□□ -1.08
CKAP4-203ENST00000553039 PPP1R15AO75807 674 aaPredicted RBP8.33□□□□□ -1.08
CKAP4-203ENST00000553039 CASKIN1Q8WXD9 1431 aa8.33□□□□□ -1.08
CKAP4-203ENST00000553039 TAOK2Q9UL54 1235 aa8.33□□□□□ -1.08
CKAP4-203ENST00000553039 TBX22Q9Y458 520 aa8.33□□□□□ -1.08
CKAP4-203ENST00000553039 ARHGAP23Q9P227 1491 aa8.32□□□□□ -1.08
CKAP4-203ENST00000553039 ADAMTS2O95450 1211 aa8.32□□□□□ -1.08
CKAP4-203ENST00000553039 IDI1Q13907 227 aa8.32□□□□□ -1.08
CKAP4-203ENST00000553039 ABCC3O15438 1527 aa8.32□□□□□ -1.08
CKAP4-203ENST00000553039 PRDM15P57071 1507 aaPredicted RBP8.32□□□□□ -1.08
CKAP4-203ENST00000553039 ARHGAP35Q9NRY4 1499 aa8.32□□□□□ -1.08
CKAP4-203ENST00000553039 PHLPP1O60346 1717 aa8.32□□□□□ -1.08
CKAP4-203ENST00000553039 ADGBQ8N7X0 1667 aa8.31□□□□□ -1.08
CKAP4-203ENST00000553039 RGS12O14924 1447 aa8.31□□□□□ -1.08
CKAP4-203ENST00000553039 VASPP50552 380 aaPredicted RBP8.31□□□□□ -1.08
CKAP4-203ENST00000553039 BRINP3Q76B58 766 aa8.31□□□□□ -1.08
CKAP4-203ENST00000553039 SLIT1O75093 1534 aa8.3□□□□□ -1.08
CKAP4-203ENST00000553039 FNBP4Q8N3X1 1017 aaPredicted RBP8.3□□□□□ -1.08
CKAP4-203ENST00000553039 SLC52A1Q9NWF4 448 aa8.3□□□□□ -1.08
CKAP4-203ENST00000553039 NCOA2Q15596 1464 aa8.3□□□□□ -1.08
CKAP4-203ENST00000553039 MBD5Q9P267 1494 aa8.3□□□□□ -1.08
CKAP4-203ENST00000553039 INO80Q9ULG1 1556 aaPredicted RBP8.3□□□□□ -1.08
CKAP4-203ENST00000553039 SETBP1Q9Y6X0 1596 aa8.3□□□□□ -1.08
CKAP4-203ENST00000553039 PRKCSHP14314 528 aaPredicted RBP8.29□□□□□ -1.08
CKAP4-203ENST00000553039 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.29□□□□□ -1.08
CKAP4-203ENST00000553039 MTUS2Q5JR59 1369 aa8.29□□□□□ -1.08
CKAP4-203ENST00000553039 NKTRP30414 1462 aaKnown RBP8.29□□□□□ -1.08
CKAP4-203ENST00000553039 ERVK-7P63135 1459 aa8.29□□□□□ -1.08
CKAP4-203ENST00000553039 SPDYE4A6NLX3 237 aa8.28□□□□□ -1.08
CKAP4-203ENST00000553039 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.28□□□□□ -1.08
CKAP4-203ENST00000553039 ZNF219Q9P2Y4 722 aaPredicted RBP8.28□□□□□ -1.08
CKAP4-203ENST00000553039 HRCP23327 699 aa8.27□□□□□ -1.09
CKAP4-203ENST00000553039 SETD5Q9C0A6 1442 aa8.27□□□□□ -1.09
CKAP4-203ENST00000553039 ZC3H13Q5T200 1668 aaKnown RBP8.27□□□□□ -1.09
CKAP4-203ENST00000553039 CDC42BPAQ5VT25 1732 aa8.26□□□□□ -1.09
CKAP4-203ENST00000553039 MAP3K1Q13233 1512 aa8.26□□□□□ -1.09
CKAP4-203ENST00000553039 DEFB132Q7Z7B7 95 aa8.26□□□□□ -1.09
CKAP4-203ENST00000553039 GJD4Q96KN9 370 aaPredicted RBP8.26□□□□□ -1.09
CKAP4-203ENST00000553039 U3KPZ7 1027 aaPredicted RBP8.26□□□□□ -1.09
CKAP4-203ENST00000553039 XIRP1Q702N8 1843 aaKnown RBP8.25□□□□□ -1.09
CKAP4-203ENST00000553039 IFNLR1Q8IU57 520 aaPredicted RBP8.25□□□□□ -1.09
CKAP4-203ENST00000553039 AMOTL2Q9Y2J4 779 aa8.25□□□□□ -1.09
CKAP4-203ENST00000553039 BLMP54132 1417 aaPredicted RBP8.25□□□□□ -1.09
CKAP4-203ENST00000553039 ARHGAP31Q2M1Z3 1444 aa8.25□□□□□ -1.09
CKAP4-203ENST00000553039 COL16A1Q07092 1604 aaPredicted RBP8.25□□□□□ -1.09
CKAP4-203ENST00000553039 KANK1Q14678 1352 aa8.24□□□□□ -1.09
CKAP4-203ENST00000553039 PSDA5PKW4 1024 aaPredicted RBP8.24□□□□□ -1.09
CKAP4-203ENST00000553039 BAG6P46379 1132 aa8.24□□□□□ -1.09
CKAP4-203ENST00000553039 CCDC141Q6ZP82 1450 aa8.24□□□□□ -1.09
CKAP4-203ENST00000553039 AHDC1Q5TGY3 1603 aaPredicted RBP8.22□□□□□ -1.09
CKAP4-203ENST00000553039 TET3O43151 1660 aa8.22□□□□□ -1.09
CKAP4-203ENST00000553039 PNPLA6Q8IY17 1366 aa8.22□□□□□ -1.09
CKAP4-203ENST00000553039 PIK3R4Q99570 1358 aa8.22□□□□□ -1.09
CKAP4-203ENST00000553039 PLEKHG1Q9ULL1 1385 aa8.22□□□□□ -1.09
CKAP4-203ENST00000553039 SHPRHQ149N8 1683 aa8.21□□□□□ -1.09
CKAP4-203ENST00000553039 UBR1Q8IWV7 1749 aa8.21□□□□□ -1.09
CKAP4-203ENST00000553039 SENP3-EIF4A1A0A087X0R7 540 aa8.21□□□□□ -1.1
CKAP4-203ENST00000553039 TIAM1Q13009 1591 aa8.21□□□□□ -1.1
CKAP4-203ENST00000553039 NWD1Q149M9 1564 aa8.21□□□□□ -1.1
CKAP4-203ENST00000553039 EFCAB6Q5THR3 1501 aa8.2□□□□□ -1.1
CKAP4-203ENST00000553039 FYCO1Q9BQS8 1478 aa8.19□□□□□ -1.1
CKAP4-203ENST00000553039 CHGAP10645 457 aaKnown RBP8.19□□□□□ -1.1
CKAP4-203ENST00000553039 UNC5CLQ8IV45 518 aa8.19□□□□□ -1.1
CKAP4-203ENST00000553039 SEPT12Q8IYM1 358 aa8.19□□□□□ -1.1
CKAP4-203ENST00000553039 DDX17Q92841 729 aaKnown RBP8.19□□□□□ -1.1
CKAP4-203ENST00000553039 ATRNO75882 1429 aa8.19□□□□□ -1.1
CKAP4-203ENST00000553039 PTCH1Q13635 1447 aa8.19□□□□□ -1.1
CKAP4-203ENST00000553039 R3HDM1Q15032 1099 aaKnown RBP8.18□□□□□ -1.1
CKAP4-203ENST00000553039 KRT27Q7Z3Y8 459 aa8.18□□□□□ -1.1
CKAP4-203ENST00000553039 RRP7BPQ9NSQ0 103 aa8.18□□□□□ -1.1
CKAP4-203ENST00000553039 MROH1Q8NDA8 1641 aa8.18□□□□□ -1.1
CKAP4-203ENST00000553039 CFAP65Q6ZU64 1925 aaKnown RBP8.17□□□□□ -1.1
CKAP4-203ENST00000553039 ONECUT3O60422 494 aaPredicted RBP8.17□□□□□ -1.1
CKAP4-203ENST00000553039 APLP2Q06481 763 aa8.17□□□□□ -1.1
CKAP4-203ENST00000553039 MKRN4PQ13434 485 aaPredicted RBP8.17□□□□□ -1.1
CKAP4-203ENST00000553039 BBXQ8WY36 941 aaPredicted RBP8.17□□□□□ -1.1
CKAP4-203ENST00000553039 PPP1R1BQ9UD71 204 aaPredicted RBP8.17□□□□□ -1.1
CKAP4-203ENST00000553039 SOS2Q07890 1332 aaPredicted RBP8.17□□□□□ -1.1
CKAP4-203ENST00000553039 DCCP43146 1447 aa8.17□□□□□ -1.1
CKAP4-203ENST00000553039 CAMSAP2Q08AD1 1489 aa8.17□□□□□ -1.1
CKAP4-203ENST00000553039 C1QTNF8P60827 252 aa8.16□□□□□ -1.1
CKAP4-203ENST00000553039 CEP162Q5TB80 1403 aa8.16□□□□□ -1.1
CKAP4-203ENST00000553039 KDM2AQ9Y2K7 1162 aa8.16□□□□□ -1.1
CKAP4-203ENST00000553039 KDM5AP29375 1690 aaKnown RBP8.15□□□□□ -1.1
CKAP4-203ENST00000553039 RIMS2Q9UQ26 1411 aa8.15□□□□□ -1.1
CKAP4-203ENST00000553039 EN1Q05925 392 aaPredicted RBP8.15□□□□□ -1.1
CKAP4-203ENST00000553039 NBPF8Q3BBV2 869 aa8.15□□□□□ -1.1
CKAP4-203ENST00000553039 NBPF14Q5TI25 921 aa8.15□□□□□ -1.1
CKAP4-203ENST00000553039 LRP5O75197 1615 aa8.14□□□□□ -1.11
CKAP4-203ENST00000553039 DIP2AQ14689 1571 aa8.14□□□□□ -1.11
CKAP4-203ENST00000553039 TPRNQ4KMQ1 711 aa8.14□□□□□ -1.11
CKAP4-203ENST00000553039 ZNF784Q8NCA9 323 aaPredicted RBP8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms