RNA–Protein interactions for RNA: ENST00000552800.2

TMEM116-216, Transcript of transmembrane protein 116, human

TSL 3

Gene TMEM116, Length 485 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TMEM116-216	ENST00000552800	RAPGEF3	O95398	923 aa		13.96	□□□□□ -0.17
TMEM116-216	ENST00000552800	NBPF8	Q3BBV2	869 aa		13.96	□□□□□ -0.17
TMEM116-216	ENST00000552800	EFCAB6	Q5THR3	1501 aa		13.94	□□□□□ -0.18
TMEM116-216	ENST00000552800	SPHKAP	Q2M3C7	1700 aa		13.93	□□□□□ -0.18
TMEM116-216	ENST00000552800	EIF4G2	P78344	907 aa	Known RBP eCLIP	13.92	□□□□□ -0.18
TMEM116-216	ENST00000552800	RALGAPB	Q86X10	1494 aa		13.92	□□□□□ -0.18
TMEM116-216	ENST00000552800	GPRASP1	Q5JY77	1395 aa		13.91	□□□□□ -0.18
TMEM116-216	ENST00000552800	ARID4B	Q4LE39	1312 aa	Predicted RBP	13.9	□□□□□ -0.18
TMEM116-216	ENST00000552800	POTEI	P0CG38	1075 aa		13.9	□□□□□ -0.18
TMEM116-216	ENST00000552800	ZC3H13	Q5T200	1668 aa	Known RBP	13.9	□□□□□ -0.18
TMEM116-216	ENST00000552800	CEP152	O94986	1710 aa		13.9	□□□□□ -0.18
TMEM116-216	ENST00000552800	ABCC3	O15438	1527 aa		13.89	□□□□□ -0.19
TMEM116-216	ENST00000552800	NOS1	P29475	1434 aa		13.89	□□□□□ -0.19
TMEM116-216	ENST00000552800	CNTLN	Q9NXG0	1405 aa		13.89	□□□□□ -0.19
TMEM116-216	ENST00000552800	COL17A1	Q9UMD9	1497 aa	Predicted RBP	13.88	□□□□□ -0.19
TMEM116-216	ENST00000552800	LAMC1	P11047	1609 aa		13.88	□□□□□ -0.19
TMEM116-216	ENST00000552800	PRAG1	Q86YV5	1406 aa		13.88	□□□□□ -0.19
TMEM116-216	ENST00000552800	YEATS2	Q9ULM3	1422 aa		13.88	□□□□□ -0.19
TMEM116-216	ENST00000552800	NPAT	Q14207	1427 aa		13.87	□□□□□ -0.19
TMEM116-216	ENST00000552800	TSPOAP1	O95153	1857 aa		13.85	□□□□□ -0.19
TMEM116-216	ENST00000552800	HSPA5	P11021	654 aa	Known RBP	13.85	□□□□□ -0.19
TMEM116-216	ENST00000552800	MYT1L	Q9UL68	1186 aa		13.85	□□□□□ -0.19
TMEM116-216	ENST00000552800	CLTCL1	P53675	1640 aa		13.84	□□□□□ -0.19
TMEM116-216	ENST00000552800	DCAF11	Q8TEB1	546 aa		13.84	□□□□□ -0.19
TMEM116-216	ENST00000552800	RPGRIP1L	Q68CZ1	1315 aa		13.84	□□□□□ -0.19
TMEM116-216	ENST00000552800	POLR1A	O95602	1720 aa	Predicted RBP	13.84	□□□□□ -0.19
TMEM116-216	ENST00000552800	TRPM1	Q7Z4N2	1603 aa		13.83	□□□□□ -0.2
TMEM116-216	ENST00000552800	FBXO3	Q9UK99	471 aa		13.83	□□□□□ -0.2
TMEM116-216	ENST00000552800	KIAA1210	Q9ULL0	1709 aa		13.83	□□□□□ -0.2
TMEM116-216	ENST00000552800	PIK3C2B	O00750	1634 aa		13.82	□□□□□ -0.2
TMEM116-216	ENST00000552800	NRXN1	Q9ULB1	1477 aa		13.82	□□□□□ -0.2
TMEM116-216	ENST00000552800	CHADL	Q6NUI6	762 aa		13.82	□□□□□ -0.2
TMEM116-216	ENST00000552800	DNAJC5	Q9H3Z4	198 aa		13.82	□□□□□ -0.2
TMEM116-216	ENST00000552800	SLC52A1	Q9NWF4	448 aa		13.82	□□□□□ -0.2
TMEM116-216	ENST00000552800	WASHC2C	Q9Y4E1	1318 aa		13.82	□□□□□ -0.2
TMEM116-216	ENST00000552800	CAMSAP1	Q5T5Y3	1602 aa		13.82	□□□□□ -0.2
TMEM116-216	ENST00000552800	MYOM2	P54296	1465 aa		13.81	□□□□□ -0.2
TMEM116-216	ENST00000552800	KIF1B	O60333	1816 aa		13.81	□□□□□ -0.2
TMEM116-216	ENST00000552800	ARHGEF40	Q8TER5	1519 aa		13.8	□□□□□ -0.2
TMEM116-216	ENST00000552800	GGT6	Q6P531	493 aa		13.8	□□□□□ -0.2
TMEM116-216	ENST00000552800	MIER1	Q8N108	512 aa		13.8	□□□□□ -0.2
TMEM116-216	ENST00000552800	IFT172	Q9UG01	1749 aa		13.79	□□□□□ -0.2
TMEM116-216	ENST00000552800	WASHC2A	Q641Q2	1341 aa		13.79	□□□□□ -0.2
TMEM116-216	ENST00000552800	ZFYVE9	O95405	1425 aa		13.79	□□□□□ -0.2
TMEM116-216	ENST00000552800	ADGRB3	O60242	1522 aa		13.79	□□□□□ -0.2
TMEM116-216	ENST00000552800	USP47	Q96K76	1375 aa		13.77	□□□□□ -0.21
TMEM116-216	ENST00000552800	STAG3	Q9UJ98	1225 aa		13.77	□□□□□ -0.21
TMEM116-216	ENST00000552800	SIGLEC1	Q9BZZ2	1709 aa		13.76	□□□□□ -0.21
TMEM116-216	ENST00000552800	MADD	Q8WXG6	1647 aa		13.76	□□□□□ -0.21
TMEM116-216	ENST00000552800	CCDC7	Q96M83	1385 aa		13.76	□□□□□ -0.21
TMEM116-216	ENST00000552800	SLC24A1	O60721	1099 aa		13.76	□□□□□ -0.21
TMEM116-216	ENST00000552800	C11orf95	C9JLR9	678 aa	Predicted RBP	13.75	□□□□□ -0.21
TMEM116-216	ENST00000552800	DDX10	Q13206	875 aa	Known RBP	13.74	□□□□□ -0.21
TMEM116-216	ENST00000552800	RGL3	Q3MIN7	710 aa		13.74	□□□□□ -0.21
TMEM116-216	ENST00000552800	CARD11	Q9BXL7	1154 aa		13.74	□□□□□ -0.21
TMEM116-216	ENST00000552800	SYNM	O15061	1565 aa		13.74	□□□□□ -0.21
TMEM116-216	ENST00000552800	ROCK2	O75116	1388 aa	Known RBP	13.73	□□□□□ -0.21
TMEM116-216	ENST00000552800	CCER2	I3L3R5	266 aa		13.73	□□□□□ -0.21
TMEM116-216	ENST00000552800	CLCN6	P51797	869 aa		13.73	□□□□□ -0.21
TMEM116-216	ENST00000552800	KDM2A	Q9Y2K7	1162 aa		13.73	□□□□□ -0.21
TMEM116-216	ENST00000552800	PREX1	Q8TCU6	1659 aa		13.72	□□□□□ -0.21
TMEM116-216	ENST00000552800	SPATA31D1	Q6ZQQ2	1576 aa		13.71	□□□□□ -0.21
TMEM116-216	ENST00000552800	SETBP1	Q9Y6X0	1596 aa		13.71	□□□□□ -0.21
TMEM116-216	ENST00000552800	PPL	O60437	1756 aa		13.71	□□□□□ -0.21
TMEM116-216	ENST00000552800	KIF7	Q2M1P5	1343 aa		13.71	□□□□□ -0.21
TMEM116-216	ENST00000552800	NBPF1	Q3BBV0	1214 aa		13.71	□□□□□ -0.21
TMEM116-216	ENST00000552800	IDI1	Q13907	227 aa		13.7	□□□□□ -0.22
TMEM116-216	ENST00000552800	TESK2	Q96S53	571 aa		13.7	□□□□□ -0.22
TMEM116-216	ENST00000552800	HIRIP3	Q9BW71	556 aa	Predicted RBP	13.7	□□□□□ -0.22
TMEM116-216	ENST00000552800	ERVK-7	P63135	1459 aa		13.69	□□□□□ -0.22
TMEM116-216	ENST00000552800	CD44	P16070	742 aa	Known RBP	13.69	□□□□□ -0.22
TMEM116-216	ENST00000552800	C14orf93	Q9H972	538 aa	Known RBP	13.69	□□□□□ -0.22
TMEM116-216	ENST00000552800	UGGT1	Q9NYU2	1555 aa		13.69	□□□□□ -0.22
TMEM116-216	ENST00000552800	IQGAP1	P46940	1657 aa		13.69	□□□□□ -0.22
TMEM116-216	ENST00000552800	CFAP65	Q6ZU64	1925 aa	Known RBP	13.68	□□□□□ -0.22
TMEM116-216	ENST00000552800	TMEM131L	A2VDJ0	1609 aa		13.68	□□□□□ -0.22
TMEM116-216	ENST00000552800	PIK3C2G	O75747	1445 aa		13.68	□□□□□ -0.22
TMEM116-216	ENST00000552800	ST20-MTHFS	A0A0A6YYL1	179 aa		13.68	□□□□□ -0.22
TMEM116-216	ENST00000552800	MROH2A	A6NES4	1674 aa		13.68	□□□□□ -0.22
TMEM116-216	ENST00000552800	KDM5A	P29375	1690 aa	Known RBP	13.68	□□□□□ -0.22
TMEM116-216	ENST00000552800	SCAF11	Q99590	1463 aa	Known RBP	13.67	□□□□□ -0.22
TMEM116-216	ENST00000552800	VGF	O15240	615 aa	Predicted RBP	13.67	□□□□□ -0.22
TMEM116-216	ENST00000552800	VASP	P50552	380 aa	Predicted RBP	13.67	□□□□□ -0.22
TMEM116-216	ENST00000552800	SBNO2	Q9Y2G9	1366 aa		13.67	□□□□□ -0.22
TMEM116-216	ENST00000552800	NEXMIF	Q5QGS0	1516 aa		13.66	□□□□□ -0.22
TMEM116-216	ENST00000552800	PRR29	P0C7W0	189 aa		13.66	□□□□□ -0.22
TMEM116-216	ENST00000552800	ZMYM3	Q14202	1370 aa		13.66	□□□□□ -0.22
TMEM116-216	ENST00000552800	PUS7	Q96PZ0	661 aa	Known RBP	13.65	□□□□□ -0.22
TMEM116-216	ENST00000552800	ADGRF5	Q8IZF2	1346 aa		13.64	□□□□□ -0.23
TMEM116-216	ENST00000552800	CLTC	Q00610	1675 aa	Known RBP	13.63	□□□□□ -0.23
TMEM116-216	ENST00000552800	ANP32C	O43423	234 aa		13.63	□□□□□ -0.23
TMEM116-216	ENST00000552800	ZNF326	Q5BKZ1	582 aa	Known RBP	13.63	□□□□□ -0.23
TMEM116-216	ENST00000552800	MYO3A	Q8NEV4	1616 aa		13.63	□□□□□ -0.23
TMEM116-216	ENST00000552800	ADGRB1	O14514	1584 aa		13.62	□□□□□ -0.23
TMEM116-216	ENST00000552800	KTN1	Q86UP2	1357 aa	Known RBP	13.62	□□□□□ -0.23
TMEM116-216	ENST00000552800	DCBLD2	Q96PD2	775 aa		13.62	□□□□□ -0.23
TMEM116-216	ENST00000552800	FBXO31	Q5XUX0	539 aa	Predicted RBP	13.6	□□□□□ -0.23
TMEM116-216	ENST00000552800	EIF3A	Q14152	1382 aa	Known RBP	13.59	□□□□□ -0.23
TMEM116-216	ENST00000552800	PER1	O15534	1290 aa	Predicted RBP	13.59	□□□□□ -0.23
TMEM116-216	ENST00000552800	TMF1	P82094	1093 aa		13.59	□□□□□ -0.23

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