RNA–Protein interactions for RNA: ENST00000550587.5

DEPDC4-209, Transcript of DEP domain containing 4, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene DEPDC4, Length 1,165 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-209ENST00000550587 SAMD9Q5K651 1589 aa9.71□□□□□ -0.85
DEPDC4-209ENST00000550587 PTCD2Q8WV60 388 aaKnown RBP9.71□□□□□ -0.86
DEPDC4-209ENST00000550587 ATP1B4Q9UN42 357 aaPredicted RBP9.71□□□□□ -0.86
DEPDC4-209ENST00000550587 POGZQ7Z3K3 1410 aa9.71□□□□□ -0.86
DEPDC4-209ENST00000550587 CDK11AQ9UQ88 783 aaPredicted RBP9.7□□□□□ -0.86
DEPDC4-209ENST00000550587 DENND4BO75064 1496 aaPredicted RBP9.7□□□□□ -0.86
DEPDC4-209ENST00000550587 PTPRMP28827 1452 aa9.7□□□□□ -0.86
DEPDC4-209ENST00000550587 FHOD3Q2V2M9 1422 aa9.69□□□□□ -0.86
DEPDC4-209ENST00000550587 CFAP74Q9C0B2 1584 aa9.69□□□□□ -0.86
DEPDC4-209ENST00000550587 NUP153P49790 1475 aaKnown RBP9.68□□□□□ -0.86
DEPDC4-209ENST00000550587 CLIP1P30622 1438 aa9.68□□□□□ -0.86
DEPDC4-209ENST00000550587 AKNAQ7Z591 1439 aa9.68□□□□□ -0.86
DEPDC4-209ENST00000550587 PBX2P40425 430 aa9.68□□□□□ -0.86
DEPDC4-209ENST00000550587 FANCAO15360 1455 aa9.67□□□□□ -0.86
DEPDC4-209ENST00000550587 PTGER2P43116 358 aa9.67□□□□□ -0.86
DEPDC4-209ENST00000550587 EFCAB5A4FU69 1503 aa9.66□□□□□ -0.86
DEPDC4-209ENST00000550587 ADAMTSL3P82987 1691 aa9.66□□□□□ -0.86
DEPDC4-209ENST00000550587 BCORL1Q5H9F3 1711 aa9.65□□□□□ -0.86
DEPDC4-209ENST00000550587 EFCAB2Q5VUJ9 269 aa9.65□□□□□ -0.86
DEPDC4-209ENST00000550587 RYDENQ9NUL5 291 aaKnown RBP9.64□□□□□ -0.87
DEPDC4-209ENST00000550587 MAGI2Q86UL8 1455 aa9.64□□□□□ -0.87
DEPDC4-209ENST00000550587 FMN1Q68DA7 1419 aa9.64□□□□□ -0.87
DEPDC4-209ENST00000550587 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.63□□□□□ -0.87
DEPDC4-209ENST00000550587 ARHGAP33O14559 1287 aa9.63□□□□□ -0.87
DEPDC4-209ENST00000550587 MLECQ14165 292 aa9.63□□□□□ -0.87
DEPDC4-209ENST00000550587 CRISPLD2Q9H0B8 497 aa9.63□□□□□ -0.87
DEPDC4-209ENST00000550587 MADDQ8WXG6 1647 aa9.63□□□□□ -0.87
DEPDC4-209ENST00000550587 ARHGEF40Q8TER5 1519 aa9.62□□□□□ -0.87
DEPDC4-209ENST00000550587 PSDA5PKW4 1024 aaPredicted RBP9.62□□□□□ -0.87
DEPDC4-209ENST00000550587 TBC1D12O60347 775 aa9.62□□□□□ -0.87
DEPDC4-209ENST00000550587 UPF1Q92900 1129 aaKnown RBP eCLIP9.62□□□□□ -0.87
DEPDC4-209ENST00000550587 SCAPERQ9BY12 1400 aa9.62□□□□□ -0.87
DEPDC4-209ENST00000550587 PCF11O94913 1555 aaKnown RBP9.62□□□□□ -0.87
DEPDC4-209ENST00000550587 FRMPD1Q5SYB0 1578 aa9.62□□□□□ -0.87
DEPDC4-209ENST00000550587 ZFYVE16Q7Z3T8 1539 aa9.61□□□□□ -0.87
DEPDC4-209ENST00000550587 ARHGAP35Q9NRY4 1499 aa9.61□□□□□ -0.87
DEPDC4-209ENST00000550587 GTPBP6O43824 516 aaPredicted RBP9.61□□□□□ -0.87
DEPDC4-209ENST00000550587 ESF1Q9H501 851 aaKnown RBP9.61□□□□□ -0.87
DEPDC4-209ENST00000550587 PLCH2O75038 1416 aa9.61□□□□□ -0.87
DEPDC4-209ENST00000550587 RICTORQ6R327 1708 aa9.61□□□□□ -0.87
DEPDC4-209ENST00000550587 RIMS1Q86UR5 1692 aaKnown RBP9.61□□□□□ -0.87
DEPDC4-209ENST00000550587 NCKAP5LQ9HCH0 1330 aa9.6□□□□□ -0.87
DEPDC4-209ENST00000550587 PSEN2P49810 448 aa9.6□□□□□ -0.87
DEPDC4-209ENST00000550587 PPP1R15BQ5SWA1 713 aa9.6□□□□□ -0.87
DEPDC4-209ENST00000550587 DMRTA1Q5VZB9 504 aa9.6□□□□□ -0.87
DEPDC4-209ENST00000550587 OXER1Q8TDS5 423 aa9.6□□□□□ -0.87
DEPDC4-209ENST00000550587 ADGRD1Q6QNK2 874 aa9.59□□□□□ -0.87
DEPDC4-209ENST00000550587 CDK13Q14004 1512 aaKnown RBP9.59□□□□□ -0.87
DEPDC4-209ENST00000550587 ZMYM4Q5VZL5 1548 aa9.59□□□□□ -0.87
DEPDC4-209ENST00000550587 HECW1Q76N89 1606 aa9.59□□□□□ -0.87
DEPDC4-209ENST00000550587 TTC37Q6PGP7 1564 aa9.58□□□□□ -0.88
DEPDC4-209ENST00000550587 SPATA31D1Q6ZQQ2 1576 aa9.58□□□□□ -0.88
DEPDC4-209ENST00000550587 VPS8Q8N3P4 1428 aa9.58□□□□□ -0.88
DEPDC4-209ENST00000550587 HSPA2P54652 639 aa9.58□□□□□ -0.88
DEPDC4-209ENST00000550587 PPP4R3BQ5MIZ7 849 aa9.58□□□□□ -0.88
DEPDC4-209ENST00000550587 ATP10AO60312 1499 aa9.58□□□□□ -0.88
DEPDC4-209ENST00000550587 YEATS2Q9ULM3 1422 aa9.57□□□□□ -0.88
DEPDC4-209ENST00000550587 ZNF518AQ6AHZ1 1483 aa9.56□□□□□ -0.88
DEPDC4-209ENST00000550587 PDE4AP27815 886 aa9.56□□□□□ -0.88
DEPDC4-209ENST00000550587 CERKQ8TCT0 537 aa9.56□□□□□ -0.88
DEPDC4-209ENST00000550587 MYO5CQ9NQX4 1742 aa9.56□□□□□ -0.88
DEPDC4-209ENST00000550587 KIF14Q15058 1648 aa9.56□□□□□ -0.88
DEPDC4-209ENST00000550587 C9orf84Q5VXU9 1444 aa9.56□□□□□ -0.88
DEPDC4-209ENST00000550587 ARHGAP5Q13017 1502 aa9.55□□□□□ -0.88
DEPDC4-209ENST00000550587 FER1L4A9Z1Z3 1794 aa9.55□□□□□ -0.88
DEPDC4-209ENST00000550587 LARP6Q9BRS8 491 aaKnown RBP9.54□□□□□ -0.88
DEPDC4-209ENST00000550587 TROQ12816 1431 aaPredicted RBP9.54□□□□□ -0.88
DEPDC4-209ENST00000550587 AFAP1Q8N556 730 aa9.53□□□□□ -0.88
DEPDC4-209ENST00000550587 KCNK17Q96T54 332 aa9.53□□□□□ -0.88
DEPDC4-209ENST00000550587 TK2O00142 265 aa9.52□□□□□ -0.89
DEPDC4-209ENST00000550587 HRO43593 1189 aa9.52□□□□□ -0.89
DEPDC4-209ENST00000550587 ZNF454Q8N9F8 522 aa9.52□□□□□ -0.89
DEPDC4-209ENST00000550587 UHRF1BP1Q6BDS2 1440 aa9.51□□□□□ -0.89
DEPDC4-209ENST00000550587 CEBPAP49715 358 aaPredicted RBP9.51□□□□□ -0.89
DEPDC4-209ENST00000550587 CCDC18Q5T9S5 1454 aa9.51□□□□□ -0.89
DEPDC4-209ENST00000550587 DDX27Q96GQ7 796 aaKnown RBP9.5□□□□□ -0.89
DEPDC4-209ENST00000550587 PREX1Q8TCU6 1659 aa9.5□□□□□ -0.89
DEPDC4-209ENST00000550587 ARHGEF12Q9NZN5 1544 aa9.5□□□□□ -0.89
DEPDC4-209ENST00000550587 SETD1BQ9UPS6 1966 aaKnown RBP9.5□□□□□ -0.89
DEPDC4-209ENST00000550587 CASKIN1Q8WXD9 1431 aa9.49□□□□□ -0.89
DEPDC4-209ENST00000550587 CADPS2Q86UW7 1296 aa9.49□□□□□ -0.89
DEPDC4-209ENST00000550587 ZNF777Q9ULD5 760 aaPredicted RBP9.49□□□□□ -0.89
DEPDC4-209ENST00000550587 MLH3Q9UHC1 1453 aa9.47□□□□□ -0.89
DEPDC4-209ENST00000550587 MAP3K1Q13233 1512 aa9.47□□□□□ -0.89
DEPDC4-209ENST00000550587 KDM5CP41229 1560 aa9.47□□□□□ -0.89
DEPDC4-209ENST00000550587 EVI5O60447 810 aa9.47□□□□□ -0.89
DEPDC4-209ENST00000550587 FOSBP53539 338 aa9.47□□□□□ -0.89
DEPDC4-209ENST00000550587 MFSD10Q14728 455 aa9.47□□□□□ -0.89
DEPDC4-209ENST00000550587 ANO8Q9HCE9 1232 aaPredicted RBP9.47□□□□□ -0.89
DEPDC4-209ENST00000550587 SIGLEC1Q9BZZ2 1709 aa9.47□□□□□ -0.89
DEPDC4-209ENST00000550587 FYCO1Q9BQS8 1478 aa9.47□□□□□ -0.89
DEPDC4-209ENST00000550587 PPARGC1BQ86YN6 1023 aaKnown RBP9.46□□□□□ -0.9
DEPDC4-209ENST00000550587 HCSTQ9UBK5 93 aa9.46□□□□□ -0.9
DEPDC4-209ENST00000550587 CNTLNQ9NXG0 1405 aa9.46□□□□□ -0.9
DEPDC4-209ENST00000550587 CDC42BPBQ9Y5S2 1711 aa9.45□□□□□ -0.9
DEPDC4-209ENST00000550587 BCL2L12Q9HB09 334 aa9.45□□□□□ -0.9
DEPDC4-209ENST00000550587 EMILIN3Q9NT22 766 aa9.45□□□□□ -0.9
DEPDC4-209ENST00000550587 VPS9D1Q9Y2B5 631 aa9.45□□□□□ -0.9
DEPDC4-209ENST00000550587 SPAG9O60271 1321 aaKnown RBP9.45□□□□□ -0.9
DEPDC4-209ENST00000550587 TRAPPC8Q9Y2L5 1435 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms