RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 PLEKHH2Q8IVE3 1493 aa11.17□□□□□ -0.62
DEPDC4-208ENST00000549341 CDC42BPAQ5VT25 1732 aa11.16□□□□□ -0.62
DEPDC4-208ENST00000549341 KIAA1107Q9UPP5 1409 aa11.16□□□□□ -0.62
DEPDC4-208ENST00000549341 CCNB3Q8WWL7 1395 aa11.16□□□□□ -0.62
DEPDC4-208ENST00000549341 POLR1AO95602 1720 aaPredicted RBP11.15□□□□□ -0.62
DEPDC4-208ENST00000549341 FAM135AQ9P2D6 1515 aa11.15□□□□□ -0.62
DEPDC4-208ENST00000549341 PZPP20742 1482 aa11.15□□□□□ -0.62
DEPDC4-208ENST00000549341 FAM163AQ96GL9 167 aaPredicted RBP11.15□□□□□ -0.62
DEPDC4-208ENST00000549341 RNF17Q9BXT8 1623 aaKnown RBP11.15□□□□□ -0.62
DEPDC4-208ENST00000549341 LRRC7Q96NW7 1537 aa11.14□□□□□ -0.63
DEPDC4-208ENST00000549341 KDM5DQ9BY66 1539 aa11.14□□□□□ -0.63
DEPDC4-208ENST00000549341 UGGT1Q9NYU2 1555 aa11.13□□□□□ -0.63
DEPDC4-208ENST00000549341 THEMISQ8N1K5 641 aaPredicted RBP11.13□□□□□ -0.63
DEPDC4-208ENST00000549341 FYCO1Q9BQS8 1478 aa11.12□□□□□ -0.63
DEPDC4-208ENST00000549341 ZNF644Q9H582 1327 aaPredicted RBP11.12□□□□□ -0.63
DEPDC4-208ENST00000549341 WASHC2CQ9Y4E1 1318 aa11.12□□□□□ -0.63
DEPDC4-208ENST00000549341 KIF3BO15066 747 aa11.12□□□□□ -0.63
DEPDC4-208ENST00000549341 TIE1P35590 1138 aa11.12□□□□□ -0.63
DEPDC4-208ENST00000549341 POTEAQ6S8J7 498 aa11.12□□□□□ -0.63
DEPDC4-208ENST00000549341 BMP2KQ9NSY1 1161 aaPredicted RBP11.12□□□□□ -0.63
DEPDC4-208ENST00000549341 NLRP1Q9C000 1473 aa11.12□□□□□ -0.63
DEPDC4-208ENST00000549341 SYNMO15061 1565 aa11.11□□□□□ -0.63
DEPDC4-208ENST00000549341 MED14O60244 1454 aa11.11□□□□□ -0.63
DEPDC4-208ENST00000549341 MIA2Q96PC5 1412 aa11.1□□□□□ -0.63
DEPDC4-208ENST00000549341 SRCAPQ6ZRS2 3230 aa11.1□□□□□ -0.63
DEPDC4-208ENST00000549341 DHX29Q7Z478 1369 aaKnown RBP11.1□□□□□ -0.63
DEPDC4-208ENST00000549341 IQGAP1P46940 1657 aa11.09□□□□□ -0.63
DEPDC4-208ENST00000549341 ADGBQ8N7X0 1667 aa11.09□□□□□ -0.63
DEPDC4-208ENST00000549341 MTUS2Q5JR59 1369 aa11.09□□□□□ -0.63
DEPDC4-208ENST00000549341 MIER1Q8N108 512 aa11.08□□□□□ -0.64
DEPDC4-208ENST00000549341 DEPDC5O75140 1603 aa11.08□□□□□ -0.64
DEPDC4-208ENST00000549341 MAP3K13O43283 966 aa11.07□□□□□ -0.64
DEPDC4-208ENST00000549341 LCE2DQ5TA82 110 aaPredicted RBP11.07□□□□□ -0.64
DEPDC4-208ENST00000549341 MBD5Q9P267 1494 aa11.06□□□□□ -0.64
DEPDC4-208ENST00000549341 SEC24BO95487 1268 aa11.06□□□□□ -0.64
DEPDC4-208ENST00000549341 SETD1AO15047 1707 aaKnown RBP11.06□□□□□ -0.64
DEPDC4-208ENST00000549341 POTEFA5A3E0 1075 aa11.05□□□□□ -0.64
DEPDC4-208ENST00000549341 RTEL1-TNFRSF6BF6WH68 1400 aa11.05□□□□□ -0.64
DEPDC4-208ENST00000549341 CCDC141Q6ZP82 1450 aa11.05□□□□□ -0.64
DEPDC4-208ENST00000549341 SCAF11Q99590 1463 aaKnown RBP11.05□□□□□ -0.64
DEPDC4-208ENST00000549341 TIAM1Q13009 1591 aa11.04□□□□□ -0.64
DEPDC4-208ENST00000549341 STRCP1A6NGW2 1772 aa11.04□□□□□ -0.64
DEPDC4-208ENST00000549341 SGIP1Q9BQI5 828 aa11.03□□□□□ -0.64
DEPDC4-208ENST00000549341 TRPC6Q9Y210 931 aa11.03□□□□□ -0.64
DEPDC4-208ENST00000549341 ERVK-7P63135 1459 aa11.02□□□□□ -0.65
DEPDC4-208ENST00000549341 RASEFQ8IZ41 740 aa11.02□□□□□ -0.65
DEPDC4-208ENST00000549341 TMEM94Q12767 1356 aa11.02□□□□□ -0.65
DEPDC4-208ENST00000549341 FAM135BQ49AJ0 1406 aa11.01□□□□□ -0.65
DEPDC4-208ENST00000549341 ABCC3O15438 1527 aa11.01□□□□□ -0.65
DEPDC4-208ENST00000549341 TTLL13PA6NNM8 815 aa11.01□□□□□ -0.65
DEPDC4-208ENST00000549341 IER5LQ5T953 404 aa11.01□□□□□ -0.65
DEPDC4-208ENST00000549341 RBM33Q96EV2 1170 aaKnown RBP11.01□□□□□ -0.65
DEPDC4-208ENST00000549341 CAMSAP2Q08AD1 1489 aa11□□□□□ -0.65
DEPDC4-208ENST00000549341 TXNDC2Q86VQ3 553 aa11□□□□□ -0.65
DEPDC4-208ENST00000549341 TRIM52Q96A61 297 aa11□□□□□ -0.65
DEPDC4-208ENST00000549341 CEP162Q5TB80 1403 aa11□□□□□ -0.65
DEPDC4-208ENST00000549341 EHBP1L1Q8N3D4 1523 aa10.99□□□□□ -0.65
DEPDC4-208ENST00000549341 LTKP29376 864 aa10.99□□□□□ -0.65
DEPDC4-208ENST00000549341 ZC3H13Q5T200 1668 aaKnown RBP10.98□□□□□ -0.65
DEPDC4-208ENST00000549341 MEX3CQ5U5Q3 659 aaKnown RBP10.98□□□□□ -0.65
DEPDC4-208ENST00000549341 EID1Q9Y6B2 187 aa10.98□□□□□ -0.65
DEPDC4-208ENST00000549341 NCOA2Q15596 1464 aa10.98□□□□□ -0.65
DEPDC4-208ENST00000549341 UPF1Q92900 1129 aaKnown RBP eCLIP10.97□□□□□ -0.65
DEPDC4-208ENST00000549341 ZBTB47Q9UFB7 747 aaPredicted RBP10.97□□□□□ -0.65
DEPDC4-208ENST00000549341 COLQQ9Y215 455 aaPredicted RBP10.97□□□□□ -0.65
DEPDC4-208ENST00000549341 ROBO1Q9Y6N7 1651 aa10.96□□□□□ -0.65
DEPDC4-208ENST00000549341 LRRC9Q6ZRR7 1453 aa10.96□□□□□ -0.65
DEPDC4-208ENST00000549341 JCADQ9P266 1359 aa10.96□□□□□ -0.65
DEPDC4-208ENST00000549341 MAP3K1Q13233 1512 aa10.95□□□□□ -0.66
DEPDC4-208ENST00000549341 PLCD3Q8N3E9 789 aa10.95□□□□□ -0.66
DEPDC4-208ENST00000549341 TRIM35Q9UPQ4 493 aa10.95□□□□□ -0.66
DEPDC4-208ENST00000549341 SLIT1O75093 1534 aa10.94□□□□□ -0.66
DEPDC4-208ENST00000549341 ARHGAP23Q9P227 1491 aa10.94□□□□□ -0.66
DEPDC4-208ENST00000549341 TSPY4P0CV99 314 aa10.94□□□□□ -0.66
DEPDC4-208ENST00000549341 TSPY10P0CW01 314 aa10.94□□□□□ -0.66
DEPDC4-208ENST00000549341 PROSER2Q86WR7 435 aaPredicted RBP10.94□□□□□ -0.66
DEPDC4-208ENST00000549341 SLC26A8Q96RN1 970 aa10.94□□□□□ -0.66
DEPDC4-208ENST00000549341 PCDHB13Q9Y5F0 798 aa10.94□□□□□ -0.66
DEPDC4-208ENST00000549341 MSH6P52701 1360 aa10.93□□□□□ -0.66
DEPDC4-208ENST00000549341 LRP6O75581 1613 aa10.93□□□□□ -0.66
DEPDC4-208ENST00000549341 UBR1Q8IWV7 1749 aa10.92□□□□□ -0.66
DEPDC4-208ENST00000549341 TMEM2Q9UHN6 1383 aa10.92□□□□□ -0.66
DEPDC4-208ENST00000549341 CDAN1Q8IWY9 1227 aa10.92□□□□□ -0.66
DEPDC4-208ENST00000549341 BCANQ96GW7 911 aa10.92□□□□□ -0.66
DEPDC4-208ENST00000549341 KCNA6P17658 529 aa10.91□□□□□ -0.66
DEPDC4-208ENST00000549341 RSPH4AQ5TD94 716 aa10.91□□□□□ -0.66
DEPDC4-208ENST00000549341 ZNF772Q68DY9 489 aaPredicted RBP10.91□□□□□ -0.66
DEPDC4-208ENST00000549341 MROH1Q8NDA8 1641 aa10.91□□□□□ -0.66
DEPDC4-208ENST00000549341 PRDM15P57071 1507 aaPredicted RBP10.9□□□□□ -0.66
DEPDC4-208ENST00000549341 NKTRP30414 1462 aaKnown RBP10.9□□□□□ -0.66
DEPDC4-208ENST00000549341 XIRP1Q702N8 1843 aaKnown RBP10.9□□□□□ -0.66
DEPDC4-208ENST00000549341 SLAIN2Q9P270 581 aa10.89□□□□□ -0.67
DEPDC4-208ENST00000549341 ARHGEF5Q12774 1597 aa10.89□□□□□ -0.67
DEPDC4-208ENST00000549341 PHLPP1O60346 1717 aa10.88□□□□□ -0.67
DEPDC4-208ENST00000549341 RXRBP28702 533 aa10.88□□□□□ -0.67
DEPDC4-208ENST00000549341 C14orf37Q86TY3 774 aa10.88□□□□□ -0.67
DEPDC4-208ENST00000549341 SLAIN1Q8ND83 568 aa10.88□□□□□ -0.67
DEPDC4-208ENST00000549341 EFCAB6Q5THR3 1501 aa10.88□□□□□ -0.67
DEPDC4-208ENST00000549341 SPATA31A6Q5VVP1 1343 aa10.87□□□□□ -0.67
DEPDC4-208ENST00000549341 CEP152O94986 1710 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms