RNA–Protein interactions for RNA: ENST00000549249.5

DEPDC4-207, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 1,003 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-207ENST00000549249 RPRD2Q5VT52 1461 aaKnown RBP11.8□□□□□ -0.52
DEPDC4-207ENST00000549249 CD44P16070 742 aaKnown RBP11.79□□□□□ -0.52
DEPDC4-207ENST00000549249 NEUROD1Q13562 356 aa11.79□□□□□ -0.52
DEPDC4-207ENST00000549249 GGT6Q6P531 493 aa11.79□□□□□ -0.52
DEPDC4-207ENST00000549249 ARID4BQ4LE39 1312 aaPredicted RBP11.77□□□□□ -0.53
DEPDC4-207ENST00000549249 CLTCQ00610 1675 aaKnown RBP11.77□□□□□ -0.53
DEPDC4-207ENST00000549249 PTPRTO14522 1441 aa11.77□□□□□ -0.53
DEPDC4-207ENST00000549249 NPATQ14207 1427 aa11.77□□□□□ -0.53
DEPDC4-207ENST00000549249 TRPM2O94759 1503 aa11.76□□□□□ -0.53
DEPDC4-207ENST00000549249 CLTCL1P53675 1640 aa11.76□□□□□ -0.53
DEPDC4-207ENST00000549249 ILDR1Q86SU0 546 aaPredicted RBP11.76□□□□□ -0.53
DEPDC4-207ENST00000549249 ARHGAP31Q2M1Z3 1444 aa11.74□□□□□ -0.53
DEPDC4-207ENST00000549249 PREX1Q8TCU6 1659 aa11.74□□□□□ -0.53
DEPDC4-207ENST00000549249 LHX8Q68G74 356 aa11.73□□□□□ -0.53
DEPDC4-207ENST00000549249 TONSLQ96HA7 1378 aa11.73□□□□□ -0.53
DEPDC4-207ENST00000549249 UGGT1Q9NYU2 1555 aa11.73□□□□□ -0.53
DEPDC4-207ENST00000549249 WASHC2CQ9Y4E1 1318 aa11.73□□□□□ -0.53
DEPDC4-207ENST00000549249 SYNMO15061 1565 aa11.72□□□□□ -0.53
DEPDC4-207ENST00000549249 CCDC144AA2RUR9 1427 aa11.72□□□□□ -0.53
DEPDC4-207ENST00000549249 TIMELESSQ9UNS1 1208 aa11.72□□□□□ -0.53
DEPDC4-207ENST00000549249 NOS1P29475 1434 aa11.71□□□□□ -0.53
DEPDC4-207ENST00000549249 PROM2Q8N271 834 aa11.71□□□□□ -0.53
DEPDC4-207ENST00000549249 FER1L4A9Z1Z3 1794 aa11.71□□□□□ -0.54
DEPDC4-207ENST00000549249 MROH2AA6NES4 1674 aa11.71□□□□□ -0.54
DEPDC4-207ENST00000549249 PIK3C2BO00750 1634 aa11.71□□□□□ -0.54
DEPDC4-207ENST00000549249 KIF1BO60333 1816 aa11.7□□□□□ -0.54
DEPDC4-207ENST00000549249 CLCN6P51797 869 aa11.7□□□□□ -0.54
DEPDC4-207ENST00000549249 MLECQ14165 292 aa11.7□□□□□ -0.54
DEPDC4-207ENST00000549249 L3MBTL2Q969R5 705 aa11.69□□□□□ -0.54
DEPDC4-207ENST00000549249 STAG3Q9UJ98 1225 aa11.69□□□□□ -0.54
DEPDC4-207ENST00000549249 SPATA31E1Q6ZUB1 1445 aa11.69□□□□□ -0.54
DEPDC4-207ENST00000549249 CNTLNQ9NXG0 1405 aa11.69□□□□□ -0.54
DEPDC4-207ENST00000549249 PPP1R15AO75807 674 aaPredicted RBP11.68□□□□□ -0.54
DEPDC4-207ENST00000549249 ERVK-7P63135 1459 aa11.68□□□□□ -0.54
DEPDC4-207ENST00000549249 SPATA31D1Q6ZQQ2 1576 aa11.67□□□□□ -0.54
DEPDC4-207ENST00000549249 NEURL4Q96JN8 1562 aa11.67□□□□□ -0.54
DEPDC4-207ENST00000549249 MYO5BQ9ULV0 1848 aa11.67□□□□□ -0.54
DEPDC4-207ENST00000549249 IFT172Q9UG01 1749 aa11.66□□□□□ -0.54
DEPDC4-207ENST00000549249 ADGRB3O60242 1522 aa11.66□□□□□ -0.54
DEPDC4-207ENST00000549249 C3P01024 1663 aa11.66□□□□□ -0.54
DEPDC4-207ENST00000549249 ADAMTSL3P82987 1691 aa11.65□□□□□ -0.54
DEPDC4-207ENST00000549249 MADDQ8WXG6 1647 aa11.65□□□□□ -0.54
DEPDC4-207ENST00000549249 PTPRMP28827 1452 aa11.64□□□□□ -0.55
DEPDC4-207ENST00000549249 POTEIP0CG38 1075 aa11.64□□□□□ -0.55
DEPDC4-207ENST00000549249 RIMS1Q86UR5 1692 aaKnown RBP11.64□□□□□ -0.55
DEPDC4-207ENST00000549249 ZMYM3Q14202 1370 aa11.64□□□□□ -0.55
DEPDC4-207ENST00000549249 NBPF8Q3BBV2 869 aa11.63□□□□□ -0.55
DEPDC4-207ENST00000549249 FBXO31Q5XUX0 539 aaPredicted RBP11.63□□□□□ -0.55
DEPDC4-207ENST00000549249 CREBZFQ9NS37 354 aa11.63□□□□□ -0.55
DEPDC4-207ENST00000549249 PPLO60437 1756 aa11.63□□□□□ -0.55
DEPDC4-207ENST00000549249 UHRF1BP1Q6BDS2 1440 aa11.62□□□□□ -0.55
DEPDC4-207ENST00000549249 TMEM131LA2VDJ0 1609 aa11.62□□□□□ -0.55
DEPDC4-207ENST00000549249 TRPM1Q7Z4N2 1603 aa11.6□□□□□ -0.55
DEPDC4-207ENST00000549249 RGL3Q3MIN7 710 aa11.6□□□□□ -0.55
DEPDC4-207ENST00000549249 FBXO41Q8TF61 875 aa11.6□□□□□ -0.55
DEPDC4-207ENST00000549249 ZRANB1Q9UGI0 708 aa11.6□□□□□ -0.55
DEPDC4-207ENST00000549249 PRAG1Q86YV5 1406 aa11.6□□□□□ -0.55
DEPDC4-207ENST00000549249 IDI1Q13907 227 aa11.59□□□□□ -0.55
DEPDC4-207ENST00000549249 ZNF579Q8NAF0 562 aaKnown RBP11.59□□□□□ -0.55
DEPDC4-207ENST00000549249 DCAF11Q8TEB1 546 aa11.59□□□□□ -0.55
DEPDC4-207ENST00000549249 ESF1Q9H501 851 aaKnown RBP11.59□□□□□ -0.55
DEPDC4-207ENST00000549249 RALGAPBQ86X10 1494 aa11.58□□□□□ -0.56
DEPDC4-207ENST00000549249 DCBLD2Q96PD2 775 aa11.58□□□□□ -0.56
DEPDC4-207ENST00000549249 NEXMIFQ5QGS0 1516 aa11.58□□□□□ -0.56
DEPDC4-207ENST00000549249 MYOM2P54296 1465 aa11.57□□□□□ -0.56
DEPDC4-207ENST00000549249 TNRQ92752 1358 aa11.57□□□□□ -0.56
DEPDC4-207ENST00000549249 KDM2AQ9Y2K7 1162 aa11.57□□□□□ -0.56
DEPDC4-207ENST00000549249 CEBPAP49715 358 aaPredicted RBP11.56□□□□□ -0.56
DEPDC4-207ENST00000549249 UBR1Q8IWV7 1749 aa11.56□□□□□ -0.56
DEPDC4-207ENST00000549249 SLC52A1Q9NWF4 448 aa11.56□□□□□ -0.56
DEPDC4-207ENST00000549249 NRXN1Q9ULB1 1477 aa11.56□□□□□ -0.56
DEPDC4-207ENST00000549249 KDM5AP29375 1690 aaKnown RBP11.55□□□□□ -0.56
DEPDC4-207ENST00000549249 KIAA1210Q9ULL0 1709 aa11.55□□□□□ -0.56
DEPDC4-207ENST00000549249 MYO3AQ8NEV4 1616 aa11.55□□□□□ -0.56
DEPDC4-207ENST00000549249 A2ML1A8K2U0 1454 aa11.55□□□□□ -0.56
DEPDC4-207ENST00000549249 CHGAP10645 457 aaKnown RBP11.54□□□□□ -0.56
DEPDC4-207ENST00000549249 ZNF326Q5BKZ1 582 aaKnown RBP11.54□□□□□ -0.56
DEPDC4-207ENST00000549249 LAMC1P11047 1609 aa11.53□□□□□ -0.56
DEPDC4-207ENST00000549249 HSPA2P54652 639 aa11.53□□□□□ -0.56
DEPDC4-207ENST00000549249 NLRP1Q9C000 1473 aa11.52□□□□□ -0.56
DEPDC4-207ENST00000549249 ADGRF5Q8IZF2 1346 aa11.52□□□□□ -0.57
DEPDC4-207ENST00000549249 ZNF316A6NFI3 1004 aaPredicted RBP11.51□□□□□ -0.57
DEPDC4-207ENST00000549249 ZNF142P52746 1687 aaPredicted RBP11.51□□□□□ -0.57
DEPDC4-207ENST00000549249 RPGRIP1LQ68CZ1 1315 aa11.51□□□□□ -0.57
DEPDC4-207ENST00000549249 GPRASP1Q5JY77 1395 aa11.51□□□□□ -0.57
DEPDC4-207ENST00000549249 PIK3C2GO75747 1445 aa11.51□□□□□ -0.57
DEPDC4-207ENST00000549249 SETD1BQ9UPS6 1966 aaKnown RBP11.5□□□□□ -0.57
DEPDC4-207ENST00000549249 IQGAP1P46940 1657 aa11.5□□□□□ -0.57
DEPDC4-207ENST00000549249 STAC3Q96MF2 364 aa11.5□□□□□ -0.57
DEPDC4-207ENST00000549249 ZFYVE9O95405 1425 aa11.5□□□□□ -0.57
DEPDC4-207ENST00000549249 LMTK3Q96Q04 1460 aa11.5□□□□□ -0.57
DEPDC4-207ENST00000549249 CEP170BQ9Y4F5 1589 aaPredicted RBP11.49□□□□□ -0.57
DEPDC4-207ENST00000549249 PAK3O75914 559 aaPredicted RBP11.48□□□□□ -0.57
DEPDC4-207ENST00000549249 HSPA5P11021 654 aaKnown RBP11.48□□□□□ -0.57
DEPDC4-207ENST00000549249 NBPF1Q3BBV0 1214 aa11.48□□□□□ -0.57
DEPDC4-207ENST00000549249 ROCK2O75116 1388 aaKnown RBP11.48□□□□□ -0.57
DEPDC4-207ENST00000549249 RIMS2Q9UQ26 1411 aa11.48□□□□□ -0.57
DEPDC4-207ENST00000549249 NRXN3Q9Y4C0 1643 aa11.48□□□□□ -0.57
DEPDC4-207ENST00000549249 SETD1AO15047 1707 aaKnown RBP11.48□□□□□ -0.57
DEPDC4-207ENST00000549249 POLR1AO95602 1720 aaPredicted RBP11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms