RNA–Protein interactions for RNA: ENST00000545738.6

LIMS2-217, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 5 BASIC

Gene LIMS2, Length 1,730 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-217ENST00000545738 PPLO60437 1756 aa23.76■■□□□ 1.39
LIMS2-217ENST00000545738 NUTM2DQ5VT03 806 aaPredicted RBP23.76■■□□□ 1.39
LIMS2-217ENST00000545738 RIMS2Q9UQ26 1411 aa23.75■■□□□ 1.39
LIMS2-217ENST00000545738 POLR1AO95602 1720 aaPredicted RBP23.74■■□□□ 1.39
LIMS2-217ENST00000545738 ZNF326Q5BKZ1 582 aaKnown RBP23.73■■□□□ 1.39
LIMS2-217ENST00000545738 NCKAP5LQ9HCH0 1330 aa23.73■■□□□ 1.39
LIMS2-217ENST00000545738 SCAF11Q99590 1463 aaKnown RBP23.72■■□□□ 1.39
LIMS2-217ENST00000545738 CLSPNQ9HAW4 1339 aa23.7■■□□□ 1.38
LIMS2-217ENST00000545738 SENP3Q9H4L4 574 aaPredicted RBP23.7■■□□□ 1.38
LIMS2-217ENST00000545738 TXNDC2Q86VQ3 553 aa23.69■■□□□ 1.38
LIMS2-217ENST00000545738 NRXN3Q9Y4C0 1643 aa23.66■■□□□ 1.38
LIMS2-217ENST00000545738 ANKLE2Q86XL3 938 aa23.66■■□□□ 1.38
LIMS2-217ENST00000545738 L3MBTL2Q969R5 705 aa23.66■■□□□ 1.38
LIMS2-217ENST00000545738 MED14O60244 1454 aa23.66■■□□□ 1.38
LIMS2-217ENST00000545738 ADGRF5Q8IZF2 1346 aa23.66■■□□□ 1.38
LIMS2-217ENST00000545738 RPGRIP1LQ68CZ1 1315 aa23.64■■□□□ 1.38
LIMS2-217ENST00000545738 IQGAP1P46940 1657 aa23.64■■□□□ 1.38
LIMS2-217ENST00000545738 DCAF11Q8TEB1 546 aa23.63■■□□□ 1.37
LIMS2-217ENST00000545738 MYOM2P54296 1465 aa23.63■■□□□ 1.37
LIMS2-217ENST00000545738 NRXN1Q9ULB1 1477 aa23.62■■□□□ 1.37
LIMS2-217ENST00000545738 NPHP4O75161 1426 aaPredicted RBP23.62■■□□□ 1.37
LIMS2-217ENST00000545738 EID1Q9Y6B2 187 aa23.62■■□□□ 1.37
LIMS2-217ENST00000545738 PLEKHG1Q9ULL1 1385 aa23.61■■□□□ 1.37
LIMS2-217ENST00000545738 KDM2AQ9Y2K7 1162 aa23.6■■□□□ 1.37
LIMS2-217ENST00000545738 ADAMTS13Q76LX8 1427 aa23.6■■□□□ 1.37
LIMS2-217ENST00000545738 PPP1R15AO75807 674 aaPredicted RBP23.59■■□□□ 1.37
LIMS2-217ENST00000545738 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.59■■□□□ 1.37
LIMS2-217ENST00000545738 SETBP1Q9Y6X0 1596 aa23.59■■□□□ 1.37
LIMS2-217ENST00000545738 PIK3C2GO75747 1445 aa23.59■■□□□ 1.37
LIMS2-217ENST00000545738 SETD1AO15047 1707 aaKnown RBP23.58■■□□□ 1.37
LIMS2-217ENST00000545738 TONSLQ96HA7 1378 aa23.58■■□□□ 1.36
LIMS2-217ENST00000545738 VGFO15240 615 aaPredicted RBP23.56■■□□□ 1.36
LIMS2-217ENST00000545738 SLC26A8Q96RN1 970 aa23.56■■□□□ 1.36
LIMS2-217ENST00000545738 HDGFP51858 240 aaKnown RBP23.54■■□□□ 1.36
LIMS2-217ENST00000545738 ALKQ9UM73 1620 aa23.53■■□□□ 1.36
LIMS2-217ENST00000545738 PRAG1Q86YV5 1406 aa23.53■■□□□ 1.36
LIMS2-217ENST00000545738 ASXL1Q8IXJ9 1541 aa23.52■■□□□ 1.36
LIMS2-217ENST00000545738 NBPF8Q3BBV2 869 aa23.5■■□□□ 1.35
LIMS2-217ENST00000545738 METP08581 1390 aa23.49■■□□□ 1.35
LIMS2-217ENST00000545738 STRCP1A6NGW2 1772 aa23.48■■□□□ 1.35
LIMS2-217ENST00000545738 CFAP70Q5T0N1 1121 aa23.48■■□□□ 1.35
LIMS2-217ENST00000545738 BCANQ96GW7 911 aa23.48■■□□□ 1.35
LIMS2-217ENST00000545738 DIP2AQ14689 1571 aa23.47■■□□□ 1.35
LIMS2-217ENST00000545738 PTPRUQ92729 1446 aa23.46■■□□□ 1.35
LIMS2-217ENST00000545738 C14orf93Q9H972 538 aaKnown RBP23.45■■□□□ 1.34
LIMS2-217ENST00000545738 TRPM1Q7Z4N2 1603 aa23.45■■□□□ 1.34
LIMS2-217ENST00000545738 ADGRB1O14514 1584 aa23.45■■□□□ 1.34
LIMS2-217ENST00000545738 STAC3Q96MF2 364 aa23.45■■□□□ 1.34
LIMS2-217ENST00000545738 TBX22Q9Y458 520 aa23.45■■□□□ 1.34
LIMS2-217ENST00000545738 LAMC1P11047 1609 aa23.44■■□□□ 1.34
LIMS2-217ENST00000545738 ZNF335Q9H4Z2 1342 aaPredicted RBP23.43■■□□□ 1.34
LIMS2-217ENST00000545738 CHD2O14647 1828 aaKnown RBP23.43■■□□□ 1.34
LIMS2-217ENST00000545738 NBPF1Q3BBV0 1214 aa23.42■■□□□ 1.34
LIMS2-217ENST00000545738 TMEM132EQ6IEE7 984 aa23.42■■□□□ 1.34
LIMS2-217ENST00000545738 TIMELESSQ9UNS1 1208 aa23.42■■□□□ 1.34
LIMS2-217ENST00000545738 DMRT2Q9Y5R5 561 aa23.42■■□□□ 1.34
LIMS2-217ENST00000545738 KIAA1210Q9ULL0 1709 aa23.42■■□□□ 1.34
LIMS2-217ENST00000545738 XRN1Q8IZH2 1706 aaKnown RBP23.39■■□□□ 1.34
LIMS2-217ENST00000545738 NWD1Q149M9 1564 aa23.39■■□□□ 1.33
LIMS2-217ENST00000545738 LTBP4Q8N2S1 1624 aa23.36■■□□□ 1.33
LIMS2-217ENST00000545738 RALGAPBQ86X10 1494 aa23.35■■□□□ 1.33
LIMS2-217ENST00000545738 PIK3R4Q99570 1358 aa23.35■■□□□ 1.33
LIMS2-217ENST00000545738 KCNA6P17658 529 aa23.34■■□□□ 1.33
LIMS2-217ENST00000545738 YTHDC2Q9H6S0 1430 aaKnown RBP23.34■■□□□ 1.33
LIMS2-217ENST00000545738 AMOTL2Q9Y2J4 779 aa23.33■■□□□ 1.32
LIMS2-217ENST00000545738 LRPPRCP42704 1394 aaKnown RBP23.31■■□□□ 1.32
LIMS2-217ENST00000545738 KNDC1Q76NI1 1749 aa23.31■■□□□ 1.32
LIMS2-217ENST00000545738 STK26Q9P289 416 aa23.3■■□□□ 1.32
LIMS2-217ENST00000545738 GPRASP1Q5JY77 1395 aa23.3■■□□□ 1.32
LIMS2-217ENST00000545738 ROBO2Q9HCK4 1378 aa23.3■■□□□ 1.32
LIMS2-217ENST00000545738 RBM33Q96EV2 1170 aaKnown RBP23.3■■□□□ 1.32
LIMS2-217ENST00000545738 ROCK2O75116 1388 aaKnown RBP23.3■■□□□ 1.32
LIMS2-217ENST00000545738 XIRP1Q702N8 1843 aaKnown RBP23.29■■□□□ 1.32
LIMS2-217ENST00000545738 TECPR2O15040 1411 aa23.29■■□□□ 1.32
LIMS2-217ENST00000545738 CPS1P31327 1500 aa23.28■■□□□ 1.32
LIMS2-217ENST00000545738 ARHGEF28Q8N1W1 1705 aaKnown RBP23.28■■□□□ 1.32
LIMS2-217ENST00000545738 ABCC11Q96J66 1382 aa23.28■■□□□ 1.32
LIMS2-217ENST00000545738 NKTRP30414 1462 aaKnown RBP23.27■■□□□ 1.32
LIMS2-217ENST00000545738 LRRC7Q96NW7 1537 aa23.27■■□□□ 1.32
LIMS2-217ENST00000545738 PLEKHH1Q9ULM0 1364 aa23.26■■□□□ 1.31
LIMS2-217ENST00000545738 TRAK1Q9UPV9 953 aa23.26■■□□□ 1.31
LIMS2-217ENST00000545738 PTCH1Q13635 1447 aa23.26■■□□□ 1.31
LIMS2-217ENST00000545738 DLC1Q96QB1 1528 aa23.23■■□□□ 1.31
LIMS2-217ENST00000545738 WAPLQ7Z5K2 1190 aa23.22■■□□□ 1.31
LIMS2-217ENST00000545738 CARD11Q9BXL7 1154 aa23.21■■□□□ 1.31
LIMS2-217ENST00000545738 TMEM94Q12767 1356 aa23.21■■□□□ 1.31
LIMS2-217ENST00000545738 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.2■■□□□ 1.3
LIMS2-217ENST00000545738 NALCNQ8IZF0 1738 aa23.2■■□□□ 1.3
LIMS2-217ENST00000545738 FAM135BQ49AJ0 1406 aa23.18■■□□□ 1.3
LIMS2-217ENST00000545738 PROSER2Q86WR7 435 aaPredicted RBP23.18■■□□□ 1.3
LIMS2-217ENST00000545738 PRAM1Q96QH2 718 aa23.18■■□□□ 1.3
LIMS2-217ENST00000545738 SAFB2Q14151 953 aaKnown RBP eCLIP23.16■■□□□ 1.3
LIMS2-217ENST00000545738 SIRT1Q96EB6 747 aa23.13■■□□□ 1.29
LIMS2-217ENST00000545738 QRICH2Q9H0J4 1663 aa23.13■■□□□ 1.29
LIMS2-217ENST00000545738 USP47Q96K76 1375 aa23.12■■□□□ 1.29
LIMS2-217ENST00000545738 ADGRL3Q9HAR2 1447 aa23.11■■□□□ 1.29
LIMS2-217ENST00000545738 HIRIP3Q9BW71 556 aaPredicted RBP23.08■■□□□ 1.29
LIMS2-217ENST00000545738 POGKQ9P215 609 aa23.08■■□□□ 1.29
LIMS2-217ENST00000545738 NCOA3Q9Y6Q9 1424 aa23.08■■□□□ 1.29
LIMS2-217ENST00000545738 CENPJQ9HC77 1338 aaPredicted RBP23.08■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms