RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 SHPRHQ149N8 1683 aa24.87■■□□□ 1.57
CLSTN3-216ENST00000545663 KDM5AP29375 1690 aaKnown RBP24.85■■□□□ 1.57
CLSTN3-216ENST00000545663 QTRT2Q9H974 415 aaKnown RBP24.85■■□□□ 1.57
CLSTN3-216ENST00000545663 C14orf37Q86TY3 774 aa24.84■■□□□ 1.57
CLSTN3-216ENST00000545663 MAST1Q9Y2H9 1570 aa24.84■■□□□ 1.57
CLSTN3-216ENST00000545663 AHDC1Q5TGY3 1603 aaPredicted RBP24.83■■□□□ 1.57
CLSTN3-216ENST00000545663 RBM6P78332 1123 aaKnown RBP24.82■■□□□ 1.56
CLSTN3-216ENST00000545663 ZRANB1Q9UGI0 708 aa24.82■■□□□ 1.56
CLSTN3-216ENST00000545663 SETBP1Q9Y6X0 1596 aa24.82■■□□□ 1.56
CLSTN3-216ENST00000545663 DIP2AQ14689 1571 aa24.8■■□□□ 1.56
CLSTN3-216ENST00000545663 C8orf37Q96NL8 207 aa24.79■■□□□ 1.56
CLSTN3-216ENST00000545663 BRINP3Q76B58 766 aa24.78■■□□□ 1.56
CLSTN3-216ENST00000545663 DUOX2Q9NRD8 1548 aa24.77■■□□□ 1.56
CLSTN3-216ENST00000545663 ATF3P18847 181 aa24.77■■□□□ 1.56
CLSTN3-216ENST00000545663 CADPS2Q86UW7 1296 aa24.77■■□□□ 1.56
CLSTN3-216ENST00000545663 C19orf44Q9H6X5 657 aa24.76■■□□□ 1.55
CLSTN3-216ENST00000545663 CHD2O14647 1828 aaKnown RBP24.76■■□□□ 1.55
CLSTN3-216ENST00000545663 EP400Q96L91 3159 aa24.76■■□□□ 1.55
CLSTN3-216ENST00000545663 RRP7BPQ9NSQ0 103 aa24.75■■□□□ 1.55
CLSTN3-216ENST00000545663 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.73■■□□□ 1.55
CLSTN3-216ENST00000545663 NCOA3Q9Y6Q9 1424 aa24.72■■□□□ 1.55
CLSTN3-216ENST00000545663 ADGRB3O60242 1522 aa24.71■■□□□ 1.55
CLSTN3-216ENST00000545663 ATAD2Q6PL18 1390 aa24.71■■□□□ 1.55
CLSTN3-216ENST00000545663 KIF15Q9NS87 1388 aa24.71■■□□□ 1.55
CLSTN3-216ENST00000545663 PLEKHG1Q9ULL1 1385 aa24.7■■□□□ 1.55
CLSTN3-216ENST00000545663 TBX22Q9Y458 520 aa24.69■■□□□ 1.54
CLSTN3-216ENST00000545663 PPP1R15AO75807 674 aaPredicted RBP24.68■■□□□ 1.54
CLSTN3-216ENST00000545663 ZFYVE9O95405 1425 aa24.68■■□□□ 1.54
CLSTN3-216ENST00000545663 DDX17Q92841 729 aaKnown RBP24.67■■□□□ 1.54
CLSTN3-216ENST00000545663 NOS1P29475 1434 aa24.67■■□□□ 1.54
CLSTN3-216ENST00000545663 NGLY1Q96IV0 654 aa24.66■■□□□ 1.54
CLSTN3-216ENST00000545663 SETD5Q9C0A6 1442 aa24.66■■□□□ 1.54
CLSTN3-216ENST00000545663 KANK1Q14678 1352 aa24.66■■□□□ 1.54
CLSTN3-216ENST00000545663 ADAMTS2O95450 1211 aa24.65■■□□□ 1.54
CLSTN3-216ENST00000545663 ERBINQ96RT1 1412 aa24.65■■□□□ 1.54
CLSTN3-216ENST00000545663 RIMS2Q9UQ26 1411 aa24.64■■□□□ 1.54
CLSTN3-216ENST00000545663 FOXD1Q16676 465 aa24.64■■□□□ 1.54
CLSTN3-216ENST00000545663 SLC52A1Q9NWF4 448 aa24.64■■□□□ 1.54
CLSTN3-216ENST00000545663 LRRC59Q96AG4 307 aaKnown RBP24.63■■□□□ 1.53
CLSTN3-216ENST00000545663 ASXL1Q8IXJ9 1541 aa24.61■■□□□ 1.53
CLSTN3-216ENST00000545663 LMTK2Q8IWU2 1503 aa24.61■■□□□ 1.53
CLSTN3-216ENST00000545663 PNPLA6Q8IY17 1366 aa24.6■■□□□ 1.53
CLSTN3-216ENST00000545663 MYOM3Q5VTT5 1437 aa24.59■■□□□ 1.53
CLSTN3-216ENST00000545663 ADAMTS13Q76LX8 1427 aa24.59■■□□□ 1.53
CLSTN3-216ENST00000545663 AMOTL2Q9Y2J4 779 aa24.57■■□□□ 1.52
CLSTN3-216ENST00000545663 MYO5BQ9ULV0 1848 aa24.56■■□□□ 1.52
CLSTN3-216ENST00000545663 USP21Q9UK80 565 aa24.56■■□□□ 1.52
CLSTN3-216ENST00000545663 ABCC5O15440 1437 aa24.55■■□□□ 1.52
CLSTN3-216ENST00000545663 HDGFP51858 240 aaKnown RBP24.55■■□□□ 1.52
CLSTN3-216ENST00000545663 MST1RQ04912 1400 aa24.53■■□□□ 1.52
CLSTN3-216ENST00000545663 PTPRUQ92729 1446 aa24.53■■□□□ 1.52
CLSTN3-216ENST00000545663 KANK4Q5T7N3 995 aaPredicted RBP24.53■■□□□ 1.52
CLSTN3-216ENST00000545663 NHSL1Q5SYE7 1610 aa24.53■■□□□ 1.52
CLSTN3-216ENST00000545663 TRPC5Q9UL62 973 aaPredicted RBP24.52■■□□□ 1.52
CLSTN3-216ENST00000545663 CHGAP10645 457 aaKnown RBP24.51■■□□□ 1.51
CLSTN3-216ENST00000545663 CCDC125Q86Z20 511 aa24.51■■□□□ 1.51
CLSTN3-216ENST00000545663 CHIC2Q9UKJ5 165 aa24.49■■□□□ 1.51
CLSTN3-216ENST00000545663 PIK3R4Q99570 1358 aa24.49■■□□□ 1.51
CLSTN3-216ENST00000545663 TMEM131LA2VDJ0 1609 aa24.49■■□□□ 1.51
CLSTN3-216ENST00000545663 GCC2Q8IWJ2 1684 aa24.48■■□□□ 1.51
CLSTN3-216ENST00000545663 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.48■■□□□ 1.51
CLSTN3-216ENST00000545663 DCCP43146 1447 aa24.47■■□□□ 1.51
CLSTN3-216ENST00000545663 FNBP4Q8N3X1 1017 aaPredicted RBP24.46■■□□□ 1.51
CLSTN3-216ENST00000545663 ATRNO75882 1429 aa24.45■■□□□ 1.51
CLSTN3-216ENST00000545663 DEFB132Q7Z7B7 95 aa24.44■■□□□ 1.5
CLSTN3-216ENST00000545663 CROCC2H7BZ55 1655 aa24.43■■□□□ 1.5
CLSTN3-216ENST00000545663 DAPK1P53355 1430 aa24.41■■□□□ 1.5
CLSTN3-216ENST00000545663 TRPM2O94759 1503 aa24.4■■□□□ 1.5
CLSTN3-216ENST00000545663 RPRD2Q5VT52 1461 aaKnown RBP24.38■■□□□ 1.49
CLSTN3-216ENST00000545663 ANKRD30AQ9BXX3 1397 aa24.37■■□□□ 1.49
CLSTN3-216ENST00000545663 LRP5O75197 1615 aa24.35■■□□□ 1.49
CLSTN3-216ENST00000545663 BCL9LQ86UU0 1499 aa24.34■■□□□ 1.49
CLSTN3-216ENST00000545663 PSDA5PKW4 1024 aaPredicted RBP24.34■■□□□ 1.49
CLSTN3-216ENST00000545663 ORAI2Q96SN7 254 aa24.34■■□□□ 1.49
CLSTN3-216ENST00000545663 BLMP54132 1417 aaPredicted RBP24.34■■□□□ 1.49
CLSTN3-216ENST00000545663 PTCH1Q13635 1447 aa24.34■■□□□ 1.49
CLSTN3-216ENST00000545663 GJD4Q96KN9 370 aaPredicted RBP24.33■■□□□ 1.49
CLSTN3-216ENST00000545663 SOS2Q07890 1332 aaPredicted RBP24.33■■□□□ 1.48
CLSTN3-216ENST00000545663 XRN1Q8IZH2 1706 aaKnown RBP24.32■■□□□ 1.48
CLSTN3-216ENST00000545663 UNC13BO14795 1591 aa24.32■■□□□ 1.48
CLSTN3-216ENST00000545663 PTPN23Q9H3S7 1636 aa24.31■■□□□ 1.48
CLSTN3-216ENST00000545663 C1orf167Q5SNV9 1468 aa24.31■■□□□ 1.48
CLSTN3-216ENST00000545663 METP08581 1390 aa24.3■■□□□ 1.48
CLSTN3-216ENST00000545663 ADGRL3Q9HAR2 1447 aa24.3■■□□□ 1.48
CLSTN3-216ENST00000545663 HRCP23327 699 aa24.27■■□□□ 1.48
CLSTN3-216ENST00000545663 NRXN3Q9Y4C0 1643 aa24.25■■□□□ 1.47
CLSTN3-216ENST00000545663 NALCNQ8IZF0 1738 aa24.24■■□□□ 1.47
CLSTN3-216ENST00000545663 SF3B2Q13435 895 aaKnown RBP24.23■■□□□ 1.47
CLSTN3-216ENST00000545663 VPS8Q8N3P4 1428 aa24.23■■□□□ 1.47
CLSTN3-216ENST00000545663 LAMC1P11047 1609 aa24.23■■□□□ 1.47
CLSTN3-216ENST00000545663 MYOM2P54296 1465 aa24.22■■□□□ 1.47
CLSTN3-216ENST00000545663 COL22A1Q8NFW1 1626 aaPredicted RBP24.2■■□□□ 1.46
CLSTN3-216ENST00000545663 RALGAPBQ86X10 1494 aa24.19■■□□□ 1.46
CLSTN3-216ENST00000545663 ANKRD50Q9ULJ7 1429 aa24.19■■□□□ 1.46
CLSTN3-216ENST00000545663 GLI3P10071 1580 aa24.18■■□□□ 1.46
CLSTN3-216ENST00000545663 E9PCH4 1651 aa24.16■■□□□ 1.46
CLSTN3-216ENST00000545663 XPCQ01831 940 aaPredicted RBP24.16■■□□□ 1.46
CLSTN3-216ENST00000545663 UNC5CLQ8IV45 518 aa24.16■■□□□ 1.46
CLSTN3-216ENST00000545663 SEPT12Q8IYM1 358 aa24.16■■□□□ 1.46
CLSTN3-216ENST00000545663 BRWD3Q6RI45 1802 aa24.16■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms