RNA–Protein interactions for RNA: ENST00000545215.5

LDHA-223, Transcript of lactate dehydrogenase A, human

TSL 1 (best)

Gene LDHA, Length 1,340 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LDHA-223	ENST00000545215	GGT6	Q6P531	493 aa		11.61	□□□□□ -0.55
LDHA-223	ENST00000545215	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11.61	□□□□□ -0.55
LDHA-223	ENST00000545215	BCL9L	Q86UU0	1499 aa		11.61	□□□□□ -0.55
LDHA-223	ENST00000545215	ATP7A	Q04656	1500 aa		11.61	□□□□□ -0.55
LDHA-223	ENST00000545215	CEP350	Q5VT06	3117 aa		11.61	□□□□□ -0.55
LDHA-223	ENST00000545215	PRKCSH	P14314	528 aa	Predicted RBP	11.6	□□□□□ -0.55
LDHA-223	ENST00000545215	SPRYD3	Q8NCJ5	442 aa		11.6	□□□□□ -0.55
LDHA-223	ENST00000545215	DEFB132	Q7Z7B7	95 aa		11.6	□□□□□ -0.55
LDHA-223	ENST00000545215	MAP3K1	Q13233	1512 aa		11.59	□□□□□ -0.55
LDHA-223	ENST00000545215	BLM	P54132	1417 aa	Predicted RBP	11.59	□□□□□ -0.55
LDHA-223	ENST00000545215	NLRP1	Q9C000	1473 aa		11.59	□□□□□ -0.55
LDHA-223	ENST00000545215	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.59	□□□□□ -0.55
LDHA-223	ENST00000545215	ARHGAP5	Q13017	1502 aa		11.58	□□□□□ -0.56
LDHA-223	ENST00000545215	PLEKHG5	O94827	1062 aa		11.58	□□□□□ -0.56
LDHA-223	ENST00000545215	C8orf37	Q96NL8	207 aa		11.58	□□□□□ -0.56
LDHA-223	ENST00000545215	MIA2	Q96PC5	1412 aa		11.57	□□□□□ -0.56
LDHA-223	ENST00000545215	PROSER2	Q86WR7	435 aa	Predicted RBP	11.56	□□□□□ -0.56
LDHA-223	ENST00000545215	KIF14	Q15058	1648 aa		11.55	□□□□□ -0.56
LDHA-223	ENST00000545215	CHGA	P10645	457 aa	Known RBP	11.55	□□□□□ -0.56
LDHA-223	ENST00000545215	TSHZ2	Q9NRE2	1034 aa		11.55	□□□□□ -0.56
LDHA-223	ENST00000545215	SAMD9	Q5K651	1589 aa		11.54	□□□□□ -0.56
LDHA-223	ENST00000545215	MSH6	P52701	1360 aa		11.54	□□□□□ -0.56
LDHA-223	ENST00000545215	AHDC1	Q5TGY3	1603 aa	Predicted RBP	11.53	□□□□□ -0.56
LDHA-223	ENST00000545215	PLXNC1	O60486	1568 aa		11.53	□□□□□ -0.56
LDHA-223	ENST00000545215	PZP	P20742	1482 aa		11.53	□□□□□ -0.56
LDHA-223	ENST00000545215	KCNA6	P17658	529 aa		11.53	□□□□□ -0.56
LDHA-223	ENST00000545215	CACNB1	Q02641	598 aa	Predicted RBP	11.53	□□□□□ -0.56
LDHA-223	ENST00000545215	DIP2A	Q14689	1571 aa		11.51	□□□□□ -0.57
LDHA-223	ENST00000545215	TRPC5	Q9UL62	973 aa	Predicted RBP	11.51	□□□□□ -0.57
LDHA-223	ENST00000545215	ABCC3	O15438	1527 aa		11.5	□□□□□ -0.57
LDHA-223	ENST00000545215	SCAF11	Q99590	1463 aa	Known RBP	11.5	□□□□□ -0.57
LDHA-223	ENST00000545215	LTK	P29376	864 aa		11.5	□□□□□ -0.57
LDHA-223	ENST00000545215	SF3B2	Q13435	895 aa	Known RBP	11.5	□□□□□ -0.57
LDHA-223	ENST00000545215	PRDM15	P57071	1507 aa	Predicted RBP	11.5	□□□□□ -0.57
LDHA-223	ENST00000545215	A2M	P01023	1474 aa		11.5	□□□□□ -0.57
LDHA-223	ENST00000545215	TIAM1	Q13009	1591 aa		11.49	□□□□□ -0.57
LDHA-223	ENST00000545215	HS6ST3	Q8IZP7	471 aa		11.48	□□□□□ -0.57
LDHA-223	ENST00000545215	SAMD9L	Q8IVG5	1584 aa		11.47	□□□□□ -0.57
LDHA-223	ENST00000545215	TXNDC2	Q86VQ3	553 aa		11.47	□□□□□ -0.57
LDHA-223	ENST00000545215	USP21	Q9UK80	565 aa		11.47	□□□□□ -0.57
LDHA-223	ENST00000545215	SPAG9	O60271	1321 aa	Known RBP	11.46	□□□□□ -0.57
LDHA-223	ENST00000545215	CDC42BPB	Q9Y5S2	1711 aa		11.46	□□□□□ -0.58
LDHA-223	ENST00000545215	SUPT5H	O00267	1087 aa	Known RBP	11.45	□□□□□ -0.58
LDHA-223	ENST00000545215	R3HDM1	Q15032	1099 aa	Known RBP	11.45	□□□□□ -0.58
LDHA-223	ENST00000545215	TPRN	Q4KMQ1	711 aa		11.45	□□□□□ -0.58
LDHA-223	ENST00000545215	RTEL1-TNFRSF6B	F6WH68	1400 aa		11.44	□□□□□ -0.58
LDHA-223	ENST00000545215	ATRN	O75882	1429 aa		11.44	□□□□□ -0.58
LDHA-223	ENST00000545215	RNF25	Q96BH1	459 aa	Predicted RBP	11.44	□□□□□ -0.58
LDHA-223	ENST00000545215	SETD5	Q9C0A6	1442 aa		11.43	□□□□□ -0.58
LDHA-223	ENST00000545215	GSE1	Q14687	1217 aa		11.43	□□□□□ -0.58
LDHA-223	ENST00000545215	FNBP4	Q8N3X1	1017 aa	Predicted RBP	11.42	□□□□□ -0.58
LDHA-223	ENST00000545215	NKTR	P30414	1462 aa	Known RBP	11.42	□□□□□ -0.58
LDHA-223	ENST00000545215	ARHGAP23	Q9P227	1491 aa		11.42	□□□□□ -0.58
LDHA-223	ENST00000545215	NUBP1	P53384	320 aa		11.41	□□□□□ -0.58
LDHA-223	ENST00000545215	LRRC59	Q96AG4	307 aa	Known RBP	11.41	□□□□□ -0.58
LDHA-223	ENST00000545215	KDM5A	P29375	1690 aa	Known RBP	11.41	□□□□□ -0.58
LDHA-223	ENST00000545215	NCOA2	Q15596	1464 aa		11.4	□□□□□ -0.58
LDHA-223	ENST00000545215	GIGYF1	O75420	1035 aa	Predicted RBP	11.4	□□□□□ -0.58
LDHA-223	ENST00000545215	CDK11A	Q9UQ88	783 aa	Predicted RBP	11.4	□□□□□ -0.58
LDHA-223	ENST00000545215	SLIT1	O75093	1534 aa		11.4	□□□□□ -0.58
LDHA-223	ENST00000545215	ADGB	Q8N7X0	1667 aa		11.4	□□□□□ -0.58
LDHA-223	ENST00000545215	UNC13B	O14795	1591 aa		11.4	□□□□□ -0.59
LDHA-223	ENST00000545215	PRX	Q9BXM0	1461 aa		11.4	□□□□□ -0.59
LDHA-223	ENST00000545215	ADAMTS2	O95450	1211 aa		11.39	□□□□□ -0.59
LDHA-223	ENST00000545215	PRELP	P51888	382 aa		11.39	□□□□□ -0.59
LDHA-223	ENST00000545215	EID1	Q9Y6B2	187 aa		11.39	□□□□□ -0.59
LDHA-223	ENST00000545215	WASHC2C	Q9Y4E1	1318 aa		11.39	□□□□□ -0.59
LDHA-223	ENST00000545215	NINL	Q9Y2I6	1382 aa		11.39	□□□□□ -0.59
LDHA-223	ENST00000545215	BAG6	P46379	1132 aa		11.38	□□□□□ -0.59
LDHA-223	ENST00000545215	BRINP3	Q76B58	766 aa		11.38	□□□□□ -0.59
LDHA-223	ENST00000545215	UBR1	Q8IWV7	1749 aa		11.37	□□□□□ -0.59
LDHA-223	ENST00000545215	PNPLA6	Q8IY17	1366 aa		11.37	□□□□□ -0.59
LDHA-223	ENST00000545215	CADPS2	Q86UW7	1296 aa		11.36	□□□□□ -0.59
LDHA-223	ENST00000545215	GJD4	Q96KN9	370 aa	Predicted RBP	11.36	□□□□□ -0.59
LDHA-223	ENST00000545215	INO80	Q9ULG1	1556 aa	Predicted RBP	11.36	□□□□□ -0.59
LDHA-223	ENST00000545215	TRO	Q12816	1431 aa	Predicted RBP	11.36	□□□□□ -0.59
LDHA-223	ENST00000545215	NCOA3	Q9Y6Q9	1424 aa		11.36	□□□□□ -0.59
LDHA-223	ENST00000545215	SLC26A8	Q96RN1	970 aa		11.35	□□□□□ -0.59
LDHA-223	ENST00000545215	CAMTA1	Q9Y6Y1	1673 aa		11.35	□□□□□ -0.59
LDHA-223	ENST00000545215	PREX2	Q70Z35	1606 aa		11.35	□□□□□ -0.59
LDHA-223	ENST00000545215	HNRNPM	P52272	730 aa	Known RBP eCLIP	11.35	□□□□□ -0.59
LDHA-223	ENST00000545215	MAST1	Q9Y2H9	1570 aa		11.34	□□□□□ -0.59
LDHA-223	ENST00000545215	RIOK3	O14730	519 aa	Known RBP	11.34	□□□□□ -0.59
LDHA-223	ENST00000545215	NKX1-1	Q15270	411 aa	Predicted RBP	11.34	□□□□□ -0.59
LDHA-223	ENST00000545215	PPP1R1B	Q9UD71	204 aa	Predicted RBP	11.34	□□□□□ -0.59
LDHA-223	ENST00000545215	TET3	O43151	1660 aa		11.33	□□□□□ -0.6
LDHA-223	ENST00000545215	MROH1	Q8NDA8	1641 aa		11.33	□□□□□ -0.6
LDHA-223	ENST00000545215	RALGAPB	Q86X10	1494 aa		11.32	□□□□□ -0.6
LDHA-223	ENST00000545215	ATF3	P18847	181 aa		11.32	□□□□□ -0.6
LDHA-223	ENST00000545215	SPDYE1	Q8NFV5	336 aa	Predicted RBP	11.32	□□□□□ -0.6
LDHA-223	ENST00000545215	C19orf44	Q9H6X5	657 aa		11.32	□□□□□ -0.6
LDHA-223	ENST00000545215	SPHKAP	Q2M3C7	1700 aa		11.32	□□□□□ -0.6
LDHA-223	ENST00000545215	CLIP1	P30622	1438 aa		11.31	□□□□□ -0.6
LDHA-223	ENST00000545215	KIF3B	O15066	747 aa		11.31	□□□□□ -0.6
LDHA-223	ENST00000545215	EN1	Q05925	392 aa	Predicted RBP	11.31	□□□□□ -0.6
LDHA-223	ENST00000545215	DCAF8	Q5TAQ9	597 aa		11.31	□□□□□ -0.6
LDHA-223	ENST00000545215	DHX29	Q7Z478	1369 aa	Known RBP	11.31	□□□□□ -0.6
LDHA-223	ENST00000545215	COL13A1	Q5TAT6	717 aa	Predicted RBP	11.3	□□□□□ -0.6
LDHA-223	ENST00000545215	SYCP2	Q9BX26	1530 aa		11.3	□□□□□ -0.6
LDHA-223	ENST00000545215	CHD4	Q14839	1912 aa		11.29	□□□□□ -0.6

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