RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 SLC4A3P48751 1232 aa9.6□□□□□ -0.87
VPS13A-213ENST00000539950 METTL3Q86U44 580 aaKnown RBP9.6□□□□□ -0.87
VPS13A-213ENST00000539950 NECTIN2Q92692 538 aa9.6□□□□□ -0.87
VPS13A-213ENST00000539950 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.59□□□□□ -0.87
VPS13A-213ENST00000539950 ZNF516Q92618 1163 aa9.59□□□□□ -0.87
VPS13A-213ENST00000539950 IL21Q9HBE4 155 aa9.58□□□□□ -0.88
VPS13A-213ENST00000539950 RGS20O76081 388 aa9.56□□□□□ -0.88
VPS13A-213ENST00000539950 COPS2P61201 443 aa9.56□□□□□ -0.88
VPS13A-213ENST00000539950 SLC10A3P09131 477 aa9.55□□□□□ -0.88
VPS13A-213ENST00000539950 NLRP7Q8WX94 980 aa9.55□□□□□ -0.88
VPS13A-213ENST00000539950 PHOX2BQ99453 314 aa9.54□□□□□ -0.88
VPS13A-213ENST00000539950 TULP1O00294 542 aaPredicted RBP9.53□□□□□ -0.88
VPS13A-213ENST00000539950 NKX2-3Q8TAU0 364 aa9.53□□□□□ -0.88
VPS13A-213ENST00000539950 PRR14Q9BWN1 585 aa9.53□□□□□ -0.88
VPS13A-213ENST00000539950 CFHP08603 1231 aa9.52□□□□□ -0.89
VPS13A-213ENST00000539950 BLOC1S3Q6QNY0 202 aa9.52□□□□□ -0.89
VPS13A-213ENST00000539950 PCDHB3Q9Y5E6 796 aa9.52□□□□□ -0.89
VPS13A-213ENST00000539950 KMT5BQ4FZB7 885 aa9.5□□□□□ -0.89
VPS13A-213ENST00000539950 ACTN4O43707 911 aaKnown RBP9.49□□□□□ -0.89
VPS13A-213ENST00000539950 ZPR1O75312 459 aa9.49□□□□□ -0.89
VPS13A-213ENST00000539950 PPP1R18Q6NYC8 613 aa9.49□□□□□ -0.89
VPS13A-213ENST00000539950 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.49□□□□□ -0.89
VPS13A-213ENST00000539950 DAXXQ9UER7 740 aaPredicted RBP9.49□□□□□ -0.89
VPS13A-213ENST00000539950 MAP2K5Q13163 448 aa9.48□□□□□ -0.89
VPS13A-213ENST00000539950 DDX11L8A8MPP1 907 aa9.46□□□□□ -0.9
VPS13A-213ENST00000539950 IRF6O14896 467 aa9.45□□□□□ -0.9
VPS13A-213ENST00000539950 TLL1O43897 1013 aa9.45□□□□□ -0.9
VPS13A-213ENST00000539950 RDH13Q8NBN7 331 aa9.45□□□□□ -0.9
VPS13A-213ENST00000539950 RSPH4AQ5TD94 716 aa9.44□□□□□ -0.9
VPS13A-213ENST00000539950 LMOD2Q6P5Q4 547 aa9.44□□□□□ -0.9
VPS13A-213ENST00000539950 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.44□□□□□ -0.9
VPS13A-213ENST00000539950 PUS10Q3MIT2 529 aaKnown RBP9.43□□□□□ -0.9
VPS13A-213ENST00000539950 MINK1Q8N4C8 1332 aaPredicted RBP9.42□□□□□ -0.9
VPS13A-213ENST00000539950 IRX2Q9BZI1 471 aaPredicted RBP9.42□□□□□ -0.9
VPS13A-213ENST00000539950 CCDC102AQ96A19 550 aa9.41□□□□□ -0.9
VPS13A-213ENST00000539950 NR1I2O75469 434 aa9.4□□□□□ -0.9
VPS13A-213ENST00000539950 FUT2Q10981 343 aa9.4□□□□□ -0.9
VPS13A-213ENST00000539950 SULF1Q8IWU6 871 aa9.4□□□□□ -0.9
VPS13A-213ENST00000539950 GCGRP47871 477 aa9.39□□□□□ -0.91
VPS13A-213ENST00000539950 SCUBE3Q8IX30 993 aa9.39□□□□□ -0.91
VPS13A-213ENST00000539950 PRKD2Q9BZL6 878 aa9.39□□□□□ -0.91
VPS13A-213ENST00000539950 GGCXP38435 758 aa9.38□□□□□ -0.91
VPS13A-213ENST00000539950 MDM2Q00987 491 aaPredicted RBP9.38□□□□□ -0.91
VPS13A-213ENST00000539950 RNF223E7ERA6 249 aa9.37□□□□□ -0.91
VPS13A-213ENST00000539950 S1PR4O95977 384 aa9.37□□□□□ -0.91
VPS13A-213ENST00000539950 TMUB1Q9BVT8 246 aa9.37□□□□□ -0.91
VPS13A-213ENST00000539950 ADH1BP00325 375 aa9.36□□□□□ -0.91
VPS13A-213ENST00000539950 MORN1Q5T089 497 aa9.36□□□□□ -0.91
VPS13A-213ENST00000539950 CD46P15529 392 aa9.35□□□□□ -0.91
VPS13A-213ENST00000539950 ZC3H15Q8WU90 426 aaKnown RBP9.35□□□□□ -0.91
VPS13A-213ENST00000539950 PPEF1O14829 653 aaPredicted RBP9.34□□□□□ -0.91
VPS13A-213ENST00000539950 ZMYND10O75800 440 aa9.34□□□□□ -0.91
VPS13A-213ENST00000539950 ATP6V1AP38606 617 aa9.34□□□□□ -0.91
VPS13A-213ENST00000539950 V9GY48 417 aaPredicted RBP9.34□□□□□ -0.91
VPS13A-213ENST00000539950 BARGINQ6ZT62 677 aa9.33□□□□□ -0.92
VPS13A-213ENST00000539950 EMID1Q96A84 441 aaPredicted RBP9.33□□□□□ -0.92
VPS13A-213ENST00000539950 SPSB2Q99619 263 aa9.33□□□□□ -0.92
VPS13A-213ENST00000539950 SLC27A5Q9Y2P5 690 aa9.33□□□□□ -0.92
VPS13A-213ENST00000539950 KRI1Q8N9T8 703 aaKnown RBP9.32□□□□□ -0.92
VPS13A-213ENST00000539950 SLC6A16Q9GZN6 736 aa9.32□□□□□ -0.92
VPS13A-213ENST00000539950 THAP11Q96EK4 314 aa9.31□□□□□ -0.92
VPS13A-213ENST00000539950 GPCPD1Q9NPB8 672 aa9.31□□□□□ -0.92
VPS13A-213ENST00000539950 CLCN1P35523 988 aa9.3□□□□□ -0.92
VPS13A-213ENST00000539950 ANKLE1Q8NAG6 615 aa9.3□□□□□ -0.92
VPS13A-213ENST00000539950 REPIN1Q9BWE0 567 aaKnown RBP9.3□□□□□ -0.92
VPS13A-213ENST00000539950 FAM217BQ9NTX9 383 aaPredicted RBP9.29□□□□□ -0.92
VPS13A-213ENST00000539950 KDM4AO75164 1064 aa9.28□□□□□ -0.92
VPS13A-213ENST00000539950 FAM160A2Q8N612 972 aaPredicted RBP9.28□□□□□ -0.92
VPS13A-213ENST00000539950 GFRA3O60609 400 aa9.27□□□□□ -0.93
VPS13A-213ENST00000539950 FMNL1O95466 1100 aaPredicted RBP9.27□□□□□ -0.93
VPS13A-213ENST00000539950 SLC19A1P41440 591 aa9.27□□□□□ -0.93
VPS13A-213ENST00000539950 PLA2G2CQ5R387 149 aa9.27□□□□□ -0.93
VPS13A-213ENST00000539950 RNF19BQ6ZMZ0 732 aa9.27□□□□□ -0.93
VPS13A-213ENST00000539950 HLA-CQ95604 372 aa9.27□□□□□ -0.93
VPS13A-213ENST00000539950 GRIPAP1Q4V328 841 aa9.26□□□□□ -0.93
VPS13A-213ENST00000539950 BRICD5Q6PL45 260 aa9.26□□□□□ -0.93
VPS13A-213ENST00000539950 LIAT1Q6ZQX7 453 aa9.26□□□□□ -0.93
VPS13A-213ENST00000539950 SALL2Q9Y467 1007 aaPredicted RBP9.26□□□□□ -0.93
VPS13A-213ENST00000539950 Q6ZNB5 142 aa9.25□□□□□ -0.93
VPS13A-213ENST00000539950 PRDM9Q9NQV7 894 aa9.25□□□□□ -0.93
VPS13A-213ENST00000539950 HOXA2O43364 376 aa9.23□□□□□ -0.93
VPS13A-213ENST00000539950 LAPTM4AQ15012 233 aa9.23□□□□□ -0.93
VPS13A-213ENST00000539950 AMHR2Q16671 573 aa9.23□□□□□ -0.93
VPS13A-213ENST00000539950 SPRYD7Q5W111 196 aa9.23□□□□□ -0.93
VPS13A-213ENST00000539950 NRG2O14511 850 aaPredicted RBP9.22□□□□□ -0.93
VPS13A-213ENST00000539950 SSTR3P32745 418 aaPredicted RBP9.22□□□□□ -0.93
VPS13A-213ENST00000539950 USP46P62068 366 aa9.22□□□□□ -0.93
VPS13A-213ENST00000539950 GUCA2AQ02747 115 aa9.22□□□□□ -0.93
VPS13A-213ENST00000539950 TTLL12Q14166 644 aaPredicted RBP9.22□□□□□ -0.93
VPS13A-213ENST00000539950 TRIM67Q6ZTA4 783 aa9.22□□□□□ -0.93
VPS13A-213ENST00000539950 PDZRN3Q9UPQ7 1066 aa9.22□□□□□ -0.93
VPS13A-213ENST00000539950 Q3C1V9 767 aa9.21□□□□□ -0.94
VPS13A-213ENST00000539950 FCF1Q9Y324 198 aaKnown RBP9.21□□□□□ -0.94
VPS13A-213ENST00000539950 LCE2BO14633 110 aa9.2□□□□□ -0.94
VPS13A-213ENST00000539950 MSS51Q4VC12 460 aa9.2□□□□□ -0.94
VPS13A-213ENST00000539950 GIGYF2Q6Y7W6 1299 aaKnown RBP9.2□□□□□ -0.94
VPS13A-213ENST00000539950 ZNF598Q86UK7 904 aaKnown RBP9.2□□□□□ -0.94
VPS13A-213ENST00000539950 TRIM66O15016 1216 aa9.18□□□□□ -0.94
VPS13A-213ENST00000539950 ZNF697Q5TEC3 545 aa9.18□□□□□ -0.94
VPS13A-213ENST00000539950 NUTM1Q86Y26 1132 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms