RNA–Protein interactions for RNA: ENST00000539662.1

HMGA2-209, Transcript of high mobility group AT-hook 2, humanhuman

TSL 3

Gene HMGA2, Length 485 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-209ENST00000539662 TRPM2O94759 1503 aa16.02■□□□□ 0.15
HMGA2-209ENST00000539662 RIMS2Q9UQ26 1411 aa16.01■□□□□ 0.15
HMGA2-209ENST00000539662 EID1Q9Y6B2 187 aa16■□□□□ 0.15
HMGA2-209ENST00000539662 SLC26A8Q96RN1 970 aa15.98■□□□□ 0.15
HMGA2-209ENST00000539662 KIF1BO60333 1816 aa15.96■□□□□ 0.14
HMGA2-209ENST00000539662 FBXO41Q8TF61 875 aa15.95■□□□□ 0.14
HMGA2-209ENST00000539662 NEXMIFQ5QGS0 1516 aa15.93■□□□□ 0.14
HMGA2-209ENST00000539662 PLEKHG1Q9ULL1 1385 aa15.92■□□□□ 0.14
HMGA2-209ENST00000539662 PPP1R15AO75807 674 aaPredicted RBP15.92■□□□□ 0.14
HMGA2-209ENST00000539662 ZNF326Q5BKZ1 582 aaKnown RBP15.92■□□□□ 0.14
HMGA2-209ENST00000539662 BCANQ96GW7 911 aa15.92■□□□□ 0.14
HMGA2-209ENST00000539662 ADAMTS13Q76LX8 1427 aa15.92■□□□□ 0.14
HMGA2-209ENST00000539662 NRXN3Q9Y4C0 1643 aa15.91■□□□□ 0.14
HMGA2-209ENST00000539662 CPS1P31327 1500 aa15.9■□□□□ 0.14
HMGA2-209ENST00000539662 LRRC7Q96NW7 1537 aa15.9■□□□□ 0.14
HMGA2-209ENST00000539662 XIRP1Q702N8 1843 aaKnown RBP15.9■□□□□ 0.14
HMGA2-209ENST00000539662 RBM33Q96EV2 1170 aaKnown RBP15.89■□□□□ 0.13
HMGA2-209ENST00000539662 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.88■□□□□ 0.13
HMGA2-209ENST00000539662 CHD2O14647 1828 aaKnown RBP15.87■□□□□ 0.13
HMGA2-209ENST00000539662 CCDC144AA2RUR9 1427 aa15.87■□□□□ 0.13
HMGA2-209ENST00000539662 IQSEC2Q5JU85 1478 aa15.87■□□□□ 0.13
HMGA2-209ENST00000539662 HRCP23327 699 aa15.87■□□□□ 0.13
HMGA2-209ENST00000539662 PPLO60437 1756 aa15.87■□□□□ 0.13
HMGA2-209ENST00000539662 ALKQ9UM73 1620 aa15.86■□□□□ 0.13
HMGA2-209ENST00000539662 SPATA31E1Q6ZUB1 1445 aa15.86■□□□□ 0.13
HMGA2-209ENST00000539662 HDGFP51858 240 aaKnown RBP15.86■□□□□ 0.13
HMGA2-209ENST00000539662 RGL3Q3MIN7 710 aa15.86■□□□□ 0.13
HMGA2-209ENST00000539662 NWD1Q149M9 1564 aa15.85■□□□□ 0.13
HMGA2-209ENST00000539662 KCNA6P17658 529 aa15.85■□□□□ 0.13
HMGA2-209ENST00000539662 ANKRD30BQ9BXX2 1392 aa15.85■□□□□ 0.13
HMGA2-209ENST00000539662 PTPRUQ92729 1446 aa15.85■□□□□ 0.13
HMGA2-209ENST00000539662 SETBP1Q9Y6X0 1596 aa15.84■□□□□ 0.13
HMGA2-209ENST00000539662 TBX22Q9Y458 520 aa15.84■□□□□ 0.13
HMGA2-209ENST00000539662 IFT172Q9UG01 1749 aa15.83■□□□□ 0.13
HMGA2-209ENST00000539662 UBAP1LF5GYI3 381 aa15.83■□□□□ 0.12
HMGA2-209ENST00000539662 ACIN1Q9UKV3 1341 aaKnown RBP15.82■□□□□ 0.12
HMGA2-209ENST00000539662 METP08581 1390 aa15.82■□□□□ 0.12
HMGA2-209ENST00000539662 SETD1AO15047 1707 aaKnown RBP15.82■□□□□ 0.12
HMGA2-209ENST00000539662 TMEM94Q12767 1356 aa15.81■□□□□ 0.12
HMGA2-209ENST00000539662 DIP2AQ14689 1571 aa15.81■□□□□ 0.12
HMGA2-209ENST00000539662 ADGRF5Q8IZF2 1346 aa15.81■□□□□ 0.12
HMGA2-209ENST00000539662 RPGRIP1LQ68CZ1 1315 aa15.79■□□□□ 0.12
HMGA2-209ENST00000539662 PROSER2Q86WR7 435 aaPredicted RBP15.79■□□□□ 0.12
HMGA2-209ENST00000539662 AMOTL2Q9Y2J4 779 aa15.78■□□□□ 0.12
HMGA2-209ENST00000539662 NKTRP30414 1462 aaKnown RBP15.78■□□□□ 0.12
HMGA2-209ENST00000539662 XRN1Q8IZH2 1706 aaKnown RBP15.77■□□□□ 0.12
HMGA2-209ENST00000539662 VGFO15240 615 aaPredicted RBP15.77■□□□□ 0.12
HMGA2-209ENST00000539662 PIP4K2BP78356 416 aa15.77■□□□□ 0.12
HMGA2-209ENST00000539662 TRIM26Q12899 539 aaPredicted RBP15.77■□□□□ 0.12
HMGA2-209ENST00000539662 PIK3R4Q99570 1358 aa15.75■□□□□ 0.11
HMGA2-209ENST00000539662 SCAF1Q9H7N4 1312 aaKnown RBP15.74■□□□□ 0.11
HMGA2-209ENST00000539662 ASXL1Q8IXJ9 1541 aa15.73■□□□□ 0.11
HMGA2-209ENST00000539662 TOM1O60784 492 aa15.72■□□□□ 0.11
HMGA2-209ENST00000539662 DHX57Q6P158 1386 aaKnown RBP15.72■□□□□ 0.11
HMGA2-209ENST00000539662 PIK3C2GO75747 1445 aa15.71■□□□□ 0.11
HMGA2-209ENST00000539662 TMEM132EQ6IEE7 984 aa15.7■□□□□ 0.1
HMGA2-209ENST00000539662 NRXN1Q9ULB1 1477 aa15.7■□□□□ 0.1
HMGA2-209ENST00000539662 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.69■□□□□ 0.1
HMGA2-209ENST00000539662 HSPA1LP34931 641 aa15.69■□□□□ 0.1
HMGA2-209ENST00000539662 SIN3AQ96ST3 1273 aa15.69■□□□□ 0.1
HMGA2-209ENST00000539662 KDM2AQ9Y2K7 1162 aa15.69■□□□□ 0.1
HMGA2-209ENST00000539662 ROBO2Q9HCK4 1378 aa15.69■□□□□ 0.1
HMGA2-209ENST00000539662 MYOM2P54296 1465 aa15.69■□□□□ 0.1
HMGA2-209ENST00000539662 CFAP70Q5T0N1 1121 aa15.68■□□□□ 0.1
HMGA2-209ENST00000539662 DCAF11Q8TEB1 546 aa15.67■□□□□ 0.1
HMGA2-209ENST00000539662 NALCNQ8IZF0 1738 aa15.66■□□□□ 0.1
HMGA2-209ENST00000539662 MSH6P52701 1360 aa15.66■□□□□ 0.1
HMGA2-209ENST00000539662 C14orf37Q86TY3 774 aa15.66■□□□□ 0.1
HMGA2-209ENST00000539662 STK26Q9P289 416 aa15.66■□□□□ 0.1
HMGA2-209ENST00000539662 C14orf93Q9H972 538 aaKnown RBP15.65■□□□□ 0.1
HMGA2-209ENST00000539662 ROBO1Q9Y6N7 1651 aa15.64■□□□□ 0.09
HMGA2-209ENST00000539662 NCOA3Q9Y6Q9 1424 aa15.63■□□□□ 0.09
HMGA2-209ENST00000539662 PLEKHH1Q9ULM0 1364 aa15.62■□□□□ 0.09
HMGA2-209ENST00000539662 PTCH1Q13635 1447 aa15.62■□□□□ 0.09
HMGA2-209ENST00000539662 WAPLQ7Z5K2 1190 aa15.62■□□□□ 0.09
HMGA2-209ENST00000539662 C19orf44Q9H6X5 657 aa15.62■□□□□ 0.09
HMGA2-209ENST00000539662 SLAIN2Q9P270 581 aa15.62■□□□□ 0.09
HMGA2-209ENST00000539662 LRPPRCP42704 1394 aaKnown RBP15.62■□□□□ 0.09
HMGA2-209ENST00000539662 PRAG1Q86YV5 1406 aa15.61■□□□□ 0.09
HMGA2-209ENST00000539662 YTHDC2Q9H6S0 1430 aaKnown RBP15.61■□□□□ 0.09
HMGA2-209ENST00000539662 NEUROD1Q13562 356 aa15.61■□□□□ 0.09
HMGA2-209ENST00000539662 ADGRB1O14514 1584 aa15.61■□□□□ 0.09
HMGA2-209ENST00000539662 FAM135BQ49AJ0 1406 aa15.6■□□□□ 0.09
HMGA2-209ENST00000539662 ADGRL3Q9HAR2 1447 aa15.6■□□□□ 0.09
HMGA2-209ENST00000539662 KNDC1Q76NI1 1749 aa15.6■□□□□ 0.09
HMGA2-209ENST00000539662 PCGF6Q9BYE7 350 aa15.6■□□□□ 0.09
HMGA2-209ENST00000539662 LAMC1P11047 1609 aa15.6■□□□□ 0.09
HMGA2-209ENST00000539662 TECPR2O15040 1411 aa15.59■□□□□ 0.09
HMGA2-209ENST00000539662 ATF3P18847 181 aa15.58■□□□□ 0.08
HMGA2-209ENST00000539662 L3MBTL2Q969R5 705 aa15.58■□□□□ 0.08
HMGA2-209ENST00000539662 ABCC11Q96J66 1382 aa15.58■□□□□ 0.08
HMGA2-209ENST00000539662 MST1RQ04912 1400 aa15.58■□□□□ 0.08
HMGA2-209ENST00000539662 CADPS2Q86UW7 1296 aa15.57■□□□□ 0.08
HMGA2-209ENST00000539662 DCCP43146 1447 aa15.55■□□□□ 0.08
HMGA2-209ENST00000539662 SAFB2Q14151 953 aaKnown RBP eCLIP15.54■□□□□ 0.08
HMGA2-209ENST00000539662 NBPF1Q3BBV0 1214 aa15.54■□□□□ 0.08
HMGA2-209ENST00000539662 BRINP3Q76B58 766 aa15.54■□□□□ 0.08
HMGA2-209ENST00000539662 PHLPP1O60346 1717 aa15.54■□□□□ 0.08
HMGA2-209ENST00000539662 DDX17Q92841 729 aaKnown RBP15.53■□□□□ 0.08
HMGA2-209ENST00000539662 TRAK1Q9UPV9 953 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms